These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [GCCAGAATCGGCACGNGGGCTTGCGTGTAGTTCGGCGGCTAAAGCGCCTACTTTGTAGCGCACGTAACGTTATTTCTGGCTGGTGTTCTAAGTGATAGTGTAAAAGTAAAGGTATAAAGTATGTGGTGAAGAGGCAAGATTACACGGCGTTGGGTACTATGCATTCTCCACCGACCAGGAGGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAGCGCAGAAGGAGCGCGAAGCACTGCGGCAGGCACGCGACAAGCTCATCGCCGACAGGGTAAAGGCAGCCCGGGCACGACAGCGAGCACGCCAAAGGTTTACCGCCCGAGGAGGACGAGGACAGTAGCAAGCAACAACAGACCGAAGCATCCGATCAGCTGTACGATCCGGTGGAGGAACGACGTAAACGCAAGGCGGAGGAAAAGCAGCGCAAGCGAAAGGAAAAGGAAGAACGCCGGCAGGGAGCGGGAACGGGCGGACCATGTACGGCCGGTGGGACGAGGGCCAAGGAGCAGGAATCCCGAACNGATTCAGGGAGTGGGTTCCGGGCGAAAGGAGAAAATTCATTTCTATCCCAGGCAGCGAATGGAACGATCTAAAGCGAAGCGAACGGATTGCCGAATTCGCTCCACCAGCCGTCGAAACGGCCAGCCACGGCACGGTCCCGAAGTTGGACCACCAAAAGGCC] [+] EMBL BX467887 [GCCAGAATCGGCACGNGGGCTTGCGTGTAGTTCGGCGGCTAAAGCGCCTACTTTGTAGCGCACGTAACGTTATTTCTGGCTGGTGTTCTAAGTGATAGTGTAAAAGTAAAGGTATAAAGTATGTGGTGAAGAGGCAAGATTACACGGCGTTGGGTACTATGCATTCTCCACCGACCAGGAGGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAGCGCAGAAGGAGCGCGAAGCACTGCGGCAGGCACGCGACAAGCTCATCGCCGACAGGGTAAAGGCAGCCCGGGCACGACAGCGAGCACGCCAAAGGTTTACCGCCCGAGGAGGACGAGGACAGTAGCAAGCAACAACAGACCGAAGCATCCGATCAGCTGTACGATCCGGTGGAGGAACGACGTAAACGCAAGGCGGAGGAAAAGCAGCGCAAGCGAAAGGAAAAGGAAGAACGCCGGCAGGGAGCGGGAACGGGCGGACCATGTACGGCCGGTGGGACGAGGGCCAAGGAGCAGGAATCCCGAACNGATTCAGGGAGTGGGTTCCGGGCGAAAGGAGAAAATTCATTTCTATCCCAGGCAGCGAATGGAACGATCTAAAGCGAAGCGAACGGATTGCCGAATTCGCTCCACCAGCCGTCGAAACGGCCAGCCACGGCACGGTCCCGAAGTTGGACCACCAAAAGGCC] consensusID : consensus_1277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [CCGGCAGCACCGACTCGGAATCCTCGGACAGTGAAGGTGTGGAAGACGGAGACAAATGGGTTGAGTACACCGATTGCTTAGGACGCACGAGAAAGTGTCTCAAGAAGGACTTGAAAGAGTGTTTGGCTCGTGATAAAGAGCTGGCTAAATCGATGGCACCGCGCGAAGGACAACGCAGAGAGGATTTGCAAGGTTCTTCTAGTGTGCATACTGTACCACTAGCGAGACCAGAGACGTTGCCGAGTACCAGCACGGATGCACAAGAAGAGGAAGACGAGGACGGGGAAATGGTCGGTCCAATGCCTCCTGCGATGAGTCGAACTGACGATACAGATCTGGGTGAACGGTTCCTGGAGATGAAAGAGCAGTGGGCACAGCAGGAAGAAGCTAATCTGGAGAAGGGTTCCATACACTACCAGGACGTGCTGTTTAATGAGGCAAGACTACACGGCGTTGGGTACTATGCATTCTCCACCGACCAGGAGGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAGCGCAGAAGGAGCGCGAAG] [+] EMBL BM611851 [CCGGCAGCACCGACTCGGAATCCTCGGACAGTGAAGGTGTGGAAGACGGAGACAAATGGGTTGAGTACACCGATTGCTTAGGACGCACGAGAAAGTGTCTCAAGAAGGACTTGAAAGAGTGTTTGGCTCGTGATAAAGAGCTGGCTAAATCGATGGCACCGCGCGAAGGACAACGCAGAGAGGATTTGCAAGGTTCTTCTAGTGTGCATACTGTACCACTAGCGAGACCAGAGACGTTGCCGAGTACCAGCACGGATGCACAAGAAGAGGAAGACGAGGACGGGGAAATGGTCGGTCCAATGCCTCCTGCGATGAGTCGAACTGACGATACAGATCTGGGTGAACGGTTCCTGGAGATGAAAGAGCAGTGGGCACAGCAGGAAGAAGCTAATCTGGAGAAGGGTTCCATACACTACCAGGACGTGCTGTTTAATGAGGCAAGACTACACGGCGTTGGGTACTATGCATTCTCCACCGACCAGGAGGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAGCGCAGAAGGAGCGCGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1277#0 GCCAGAATCGGCACGNGGGCTTGCGTGTAGTTCGGCGGCTAAAGCGCCTACTTTGTAGCG 60 consensus_1277#1 ------------------------------------------------------------ consensus_1277#0 CACGTAACGTTATTTCTGGCTGGTGTTCTAAGTGATAGTGTAAAAGTAAAGGTATAAAGT 120 consensus_1277#1 ---------------CCGGCAGCACCGACTCGGAATCCTCGGACAGTGAAGGTGTGGAAG 45 * *** * * ** * * *** ***** * * consensus_1277#0 ATGTGGTGAAGAGGCAAGATTACACGGCGTTGGGTACTATGCATTCTCCACCGAC-CAGG 179 consensus_1277#1 ACGGAGACAAATGGGTTGAGTACACCG-ATTGCTTAGGACGCACGAGAAAGTGTCTCAAG 104 * * * ** ** ** ***** * *** ** * *** * * * ** * consensus_1277#0 AGGAACGCAACCGACAGCGGGACGAGCTGGATTCAATACGCGAAACAACGATGGAAGCGC 239 consensus_1277#1 AAGGACTTGAAAGAGTGTTTGGCTCGT--GATAAAGAGCTGGCTAAATCGATGGCACCGC 162 * * ** * ** * * * * *** * * * * * ****** * *** consensus_1277#0 A-GAAGGA--GCGCGAAGCACTGCGGCAGGCACGCGACAAGCTCATCGCCGACAGGGTAA 296 consensus_1277#1 GCGAAGGACAACGCAGAGAGGATTTGCAAG-GTTCTTCTAGTGTGCATACTGTACCACTA 221 ****** *** ** *** * * * ** * * * consensus_1277#0 AGGCAGCCCGGGCACGACAGCGAGCAC-GCCAAAGGTTTACCGCCCGAGGAGGACGAGGA 355 consensus_1277#1 GCG-AGACCAGAGACGTTGCCGAGTACCAGCACGGATGCACAAGAAGAGGAAGACGAGGA 280 * ** ** * *** **** ** ** * * ** ***** ******** consensus_1277#0 CAGTAGCAAGCAACAACAGACCGAAGCATCCGATCAGCTGTACGATCCGGTGGAGGAACG 415 consensus_1277#1 CGG-GGAAATGGTCGGTCCAATGCCTCCTGCGATGAGTCGAACTGAC-GATACAG-ATCT 337 * * * ** * * * * * **** ** * ** * * * ** * * consensus_1277#0 ACGTAAACG---CAAGGCGGAGGAAAAGCAGCGCAAGCGAAAGGAAAAGGAAGAACGCCG 472 consensus_1277#1 GGGTGAACGGTTCCTGGAGATGAAAGAGCAGTGGGCACAGCAGGAAGAAGCTAATCTGGA 397 ** **** * ** * * ** ***** * * ***** * * * * consensus_1277#0 GCAGGGAGCGGGA-ACGGGCGGACCATGTACGGCCGGTGGGACGAGG---------GCCA 522 consensus_1277#1 GAAGGGTTCCATACACTACCAGGACGTGC-TGTTTAATGAGGCAAGACTACACGGCGTTG 456 * **** * * ** * * * ** * ** * * ** * consensus_1277#0 AGGAGCAGGAATCCCGAACNGATTCAGGGAGTGGGTTCCGGGCGAAAGGAGAAAATTCAT 582 consensus_1277#1 GGTACTATGCATTCTCCACCGAC-CAGGAGGAACGCAACCGACAGCGGGACGAGCTGGAT 515 * * * * ** * ** ** **** * * * * * *** * * ** consensus_1277#0 TTC-TATCCCAGGCAGCGAATGGAACGATCTAAAGCGAAGCGAACGGATTGCCGAATTCG 641 consensus_1277#1 TCAATACGCGAAACAACGATGGAAGCG--CAGAAGGAGCGCGAAG--------------- 558 * ** * * ** *** * * ** * *** ***** consensus_1277#0 CTCCACCAGCCGTCGAAACGGCCAGCCACGGCACGGTCCCGAAGTTGGACCACCAAAAGG 701 consensus_1277#1 ------------------------------------------------------------ consensus_1277#0 CC 703 consensus_1277#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||