These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [CCGGTTGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGTCCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCCGTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCCATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGCAAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTTCCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGCCACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAAAGATTGAAAATGTCCGTATGATTGACAGATACAACAGCAAAAATCCAACCGTCGGTGTGCTGTACCTTACGGCCACGCATCTTATATTCGTTGACCCGGATGCCAACAAAGAGACATGGGTCCTTTACATGCACATCGCGAACGTGGAAAAGTTGCCCCTGAGCACCACCGGCTCGCCGCTGCTGATACGCTGCAAGACGTTCCTCTCCATCACGTTCGTCATACCGAAGGAGCGCGAATGTCACGACGTGTACACCACGCTCACCAAGCTGTACCAGCC] [+] EMBL BM611788 [CCGGTTGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGTCCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCCGTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCCATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGCAAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTTCCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGCCACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAAAGATTGAAAATGTCCGTATGATTGACAGATACAACAGCAAAAATCCAACCGTCGGTGTGCTGTACCTTACGGCCACGCATCTTATATTCGTTGACCCGGATGCCAACAAAGAGACATGGGTCCTTTACATGCACATCGCGAACGTGGAAAAGTTGCCCCTGAGCACCACCGGCTCGCCGCTGCTGATACGCTGCAAGACGTTCCTCTCCATCACGTTCGTCATACCGAAGGAGCGCGAATGTCACGACGTGTACACCACGCTCACCAAGCTGTACCAGCC] consensusID : consensus_1283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [CCGGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGTCCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCCGTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCCATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGCAAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTTCCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGCCACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAAAGATAAGCTCTGCGAAAAACACGTGTTACGGGTATTTGATGTGATTCGTACGTACGTCGAGCTTAAGATTGATTGAAACCTGTGCGCCCCTCCCGCTCCCAGGCCCAGTGAACTAAAAATGACCCAAGCGGAAGAGGTTCTAGAGGTGAAGAATCTCTACCACAGCAACGTGCCGGATGATCAGCATTCAC] [+] EMBL BM650934 [CCGGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGTCCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCCGTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCCATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGCAAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTTCCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGCCACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAAAGATAAGCTCTGCGAAAAACACGTGTTACGGGTATTTGATGTGATTCGTACGTACGTCGAGCTTAAGATTGATTGAAACCTGTGCGCCCCTCCCGCTCCCAGGCCCAGTGAACTAAAAATGACCCAAGCGGAAGAGGTTCTAGAGGTGAAGAATCTCTACCACAGCAACGTGCCGGATGATCAGCATTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1283#0 CCGGTTGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGT 60 consensus_1283#1 ---CCGGGAGTTTGCCGTGCAGTTTCGCTGGTTGTTGCCATTTCTTGTGATTTCAGGGGT 57 ****************************************************** consensus_1283#0 CCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCC 120 consensus_1283#1 CCTTCTTCCTTGCATTAAGGACACTCTACCGCGCGTGTGTGCGTGTGGATGTAATAATCC 117 ************************************************************ consensus_1283#0 GTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCC 180 consensus_1283#1 GTTCCGTTGATACGACCGACGGAAACGCGGAAAAGTGATCCAACCATAACTCGCGCGGCC 177 ************************************************************ consensus_1283#0 ATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGC 240 consensus_1283#1 ATACACGAATGTTCCTTATCCGACGGCGGCCAATGCTTTGTTGCTGCTGTTCGTCTGTGC 237 ************************************************************ consensus_1283#0 AAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTT 300 consensus_1283#1 AAAGTGGAAGTGGATAAAACCTGTGCCTAACTTTCTCCAATCGCGAGCAAATCTAAGGTT 297 ************************************************************ consensus_1283#0 CCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGC 360 consensus_1283#1 CCGGACGAAGGTACATTTGGTGGTTGGAACAGCCTACCCGACGAAACCTTATCACCTGGC 357 ************************************************************ consensus_1283#0 CACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAA 420 consensus_1283#1 CACCATTCGCTTACGACGGGCTTCGACGGGCACAGAAAATGGAGCACATCAACACACCAA 417 ************************************************************ consensus_1283#0 AGATTGAAAATGTCCGTATGATTGACAGATACAACAGCAAAAATCCAACCGTCGGTGTGC 480 consensus_1283#1 AGATAAG------CTCTGCGAAAAACACGTGTTACGG---GTATTTGAT-----GTGATT 463 **** * * ** *** * ** * ** * *** consensus_1283#0 TGTACCTTACGGCCACGCATCTTATATTCGTTGA--CCCGGATGCCAACAAAGAGACATG 538 consensus_1283#1 CGTACGT----ACGTCGAGCTTAAGATTGATTGAAACCTGTGCGCCCCTCCCGCTCCCAG 519 **** * * ** * * *** **** ** * *** * * * consensus_1283#0 GGTCCTTTACATGCACATCGCGAACGTGGAAAAGTTGCCCCTGAGCACCACCGGCTCGCC 598 consensus_1283#1 GCCCAGTGAACTAAAAATGACCCAAGCGGAAGAGGTTCT----AGAGGTGAAGAATCTCT 575 * * * * * * ** * * * **** ** * * ** * ** * consensus_1283#0 GCTGCTGATACGCTGCAAGACGTTCCTCTCCATCACGTTCGTCATACCGAAGGAGCGCGA 658 consensus_1283#1 ACCACAGCAACG-TGCCGGATGATCAGCAT--TCAC------------------------ 608 * * * *** *** ** * ** * **** consensus_1283#0 ATGTCACGACGTGTACACCACGCTCACCAAGCTGTACCAGCC 700 consensus_1283#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||