These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGGTCGTCACACCGATCAGTCATCTGCAGCACCACCGTGGACATCACCACCCTCACCAGCAGCAGCAGCAGCTGCTGCGGCTCCAGGGGGAATCGTTCAGTGTTACCCGATCGCGACTCGATCACCAGGCCAGCAGTGCAGGAACGGCGATCGTGCCGGTTCCGTCACATGCGACCATCTCGACCGCGACGCAAACAATCATTAGCTGGCCGCAGCCTTACGAGCAGATATTTTACGGCATCCTGCAGGAAGAGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAGGTGCAGAAAAGTGGCCGACTAGATCCGTACGCGCTGCTGGACCAGTACATAGAAACGTGTGCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTACTATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAGATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAACAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGAACGCGGGAGATCGCCTCCCTGAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCCTTACGGAGGTGTCGCGAGAGTGTGTACGCTGGAAGGAAAC] [+] EMBL BM618507 [CCGGTCGTCACACCGATCAGTCATCTGCAGCACCACCGTGGACATCACCACCCTCACCAGCAGCAGCAGCAGCTGCTGCGGCTCCAGGGGGAATCGTTCAGTGTTACCCGATCGCGACTCGATCACCAGGCCAGCAGTGCAGGAACGGCGATCGTGCCGGTTCCGTCACATGCGACCATCTCGACCGCGACGCAAACAATCATTAGCTGGCCGCAGCCTTACGAGCAGATATTTTACGGCATCCTGCAGGAAGAGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAGGTGCAGAAAAGTGGCCGACTAGATCCGTACGCGCTGCTGGACCAGTACATAGAAACGTGTGCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTACTATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAGATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAACAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGAACGCGGGAGATCGCCTCCCTGAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCCTTACGGAGGTGTCGCGAGAGTGTGTACGCTGGAAGGAAAC] consensusID : consensus_1307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [CCGCCCACGCGTCCGGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAGGTGCAGAAAAGTGGCCGACTCGATCCGTACGCGCTGCTCGACCAGTACATAGAAACGTGTGCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTACTATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAGATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAACAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGACGCGGGAGATCGCCTCCCTGAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCTTACGGAGGTGTCGCGAGAGTGTGTACGCT] [+] EMBL BM611487 [CCGCCCACGCGTCCGGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAGGTGCAGAAAAGTGGCCGACTCGATCCGTACGCGCTGCTCGACCAGTACATAGAAACGTGTGCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTACTATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAGATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAACAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGACGCGGGAGATCGCCTCCCTGAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCTTACGGAGGTGTCGCGAGAGTGTGTACGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1307#0 CCGGTCGTCACACCGATCAGTCATCTGCAGCACCACCGTGGACATCACCACCCTCACCAG 60 consensus_1307#1 ------------------------------------------------------------ consensus_1307#0 CAGCAGCAGCAGCTGCTGCGGCTCCAGGGGGAATCGTTCAGTGTTACCCGATCGCGACTC 120 consensus_1307#1 ------------------------------------------------------------ consensus_1307#0 GATCACCAGGCCAGCAGTGCAGGAACGGCGATCGTGCCGGTTCCGTCACATGCGACCATC 180 consensus_1307#1 ------------------------------------------------------------ consensus_1307#0 TCGACCGCGACGCAAACAATCATTAGCTGGCCGCAGCCTTACGAGCAGATATTTTACGGC 240 consensus_1307#1 -----------------------------------------------------------C 1 * consensus_1307#0 ATCCTGCAGGAAGAGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAG 300 consensus_1307#1 CGCCCACGCGTCCGGCTGCGCTTCAAGAACAGCATTTCCCAGATGCAGCACGAACAGCAG 61 ** * * ********************************************** consensus_1307#0 GTGCAGAAAAGTGGCCGACTAGATCCGTACGCGCTGCTGGACCAGTACATAGAAACGTGT 360 consensus_1307#1 GTGCAGAAAAGTGGCCGACTCGATCCGTACGCGCTGCTCGACCAGTACATAGAAACGTGT 121 ******************** ***************** ********************* consensus_1307#0 GCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTAC 420 consensus_1307#1 GCGAAAACGCGCGCTACGCAGGCGGAGAATGGCAACCGGGCGAACCTGCCCGAATCGTAC 181 ************************************************************ consensus_1307#0 TATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAG 480 consensus_1307#1 TATCAGGACCACATCCGGCTGTTGCATCTGCAGCTGCAGTACGAACGCCATCGGCGGGAG 241 ************************************************************ consensus_1307#0 ATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAA 540 consensus_1307#1 ATACACGCCGAGCGCAACCGGCGGCTGCTGGGCAAGAGCCGCAAAATTCGCGCGCTGGAA 301 ************************************************************ consensus_1307#0 CAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGAACGCGGGAGATCGCCTCCCT 600 consensus_1307#1 CAGAACAACGAAGCGCTGAAGGATCAGGTGGCCCGGTTGA-CGCGGGAGATCGCCTCCCT 360 **************************************** ******************* consensus_1307#0 GAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGCCTTACGGAGGTGTCGC 660 consensus_1307#1 GAATGCGGAGCTCAGTACGGTGCGCCGTAAAACGAACGCCGAGC-TTACGGAGGTGTCGC 419 ******************************************** *************** consensus_1307#0 GAGAGTGTGTACGCTGGAAGGAAAC 685 consensus_1307#1 GAGAGTGTGTACGCT---------- 434 *************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||