These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1309#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CTTACTGGATTGATTACGAAACTGCGTTGCTAGTTGCACTTCCTCTACGGCATATCGATACGGCATAGAGTGCTTTGGGGAAAGCCATGATTGCCACAACCCTCCGCCAGCTGGTGGGCCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCCCGGTAGCGGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAATCAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGATGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGATAAGCTTGAGAACAGTACGCCCAATCAAACGGAGATATTGGGGCATCTGTTGCATGTTGCCGGGCAGTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGGATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCCTCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGGACCATCCTGCGGTTATCCATTTCCATCCTGAAAAAAAAAACAAAAAAAAGGCCACATGTGCTCGAGCTGCAG] [+] EMBL CNS09297 [CTTACTGGATTGATTACGAAACTGCGTTGCTAGTTGCACTTCCTCTACGGCATATCGATACGGCATAGAGTGCTTTGGGGAAAGCCATGATTGCCACAACCCTCCGCCAGCTGGTGGGCCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCCCGGTAGCGGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAATCAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGATGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGATAAGCTTGAGAACAGTACGCCCAATCAAACGGAGATATTGGGGCATCTGTTGCATGTTGCCGGGCAGTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGGATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCCTCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGGACCATCCTGCGGTTATCCATTTCCATCCTGAAAAAAAAAACAAAAAAAAGGCCACATGTGCTCGAGCTGCAG] consensusID : consensus_1309#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [AACTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGGACAACCCTCCGCCAGCTGGTGGGCCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCCCGGTAGCTGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAATCAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGATGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGACAAGCTTGAAAACAGTACGCCCAATCAAACGGAGCTATTGGGGCATCTGTTGCATGTTGCGGGGCAGTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGGATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCCTCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGA] [-] EMBL CNS08SIR [AACTAAAAGCTGCGGAATTCCTCGAGCACTGTTGGCCTACTGGACAACCCTCCGCCAGCTGGTGGGCCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCCCGGTAGCTGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAATCAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGATGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGACAAGCTTGAAAACAGTACGCCCAATCAAACGGAGCTATTGGGGCATCTGTTGCATGTTGCGGGGCAGTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGGATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCCTCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1309#0 CTTACTGGATTGATTACGAAACTGCGTTGCTAGTTGCACTTCCTCTACGGCATATCGATA 60 consensus_1309#1 -----------------------------------------------------AACTAAA 7 * * * * consensus_1309#0 CGGCATAGAGTGCTTTGGGGAAAGCCATGATTGCC--ACAACCCTCCGCCAGCTGGTGGG 118 consensus_1309#1 AGCTGCGGAATTCCTCGAGCACTGTTG-GCCTACTGGACAACCCTCCGCCAGCTGGTGGG 66 * ** * * * * * * * * * * *********************** consensus_1309#0 CCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCC 178 consensus_1309#1 CCGCTCACTTTTCACCGTACAGCAACAGCTGGTAAGATTTCAGAGCGGTGTCGATGGGCC 126 ************************************************************ consensus_1309#0 CGGTAGCGGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAAT 238 consensus_1309#1 CGGTAGCTGCGTACCGAAACCCGGCGTCGCAAACCCGGACACCATATTCGACAAGATAAT 186 ******* **************************************************** consensus_1309#0 CAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGA 298 consensus_1309#1 CAAGAAGCAGATACCGGCAGATGTAATTTACGAAGACGAGAAATGCATTGCGTTCAACGA 246 ************************************************************ consensus_1309#0 TGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGATAAGCT 358 consensus_1309#1 TGTTGCTCCTCAAGCGCCGGTTCATTTTCTTGTGATTCCAAAGAATAAAATTGACAAGCT 306 ****************************************************** ***** consensus_1309#0 TGAGAACAGTACGCCCAATCAAACGGAGATATTGGGGCATCTGTTGCATGTTGCCGGGCA 418 consensus_1309#1 TGAAAACAGTACGCCCAATCAAACGGAGCTATTGGGGCATCTGTTGCATGTTGCGGGGCA 366 *** ************************ ************************* ***** consensus_1309#0 GTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGG 478 consensus_1309#1 GTTGGGGAAATCGAAAGCTCCCAAAGGATTCCGGCTGGTGATAAATAATGGTGACCATGG 426 ************************************************************ consensus_1309#0 ATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCC 538 consensus_1309#1 ATGTCAAACAGTGTACCATATACACCTGCACGTTATAGGCGGACGCCAGCTCGGGTGGCC 486 ************************************************************ consensus_1309#0 TCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGGACCATCCTGCG 598 consensus_1309#1 TCCCGGGTAATTGTATCGCGAACTGCACGTAACAGAAGCAAATAAATGA----------- 535 ************************************************ consensus_1309#0 GTTATCCATTTCCATCCTGAAAAAAAAAACAAAAAAAAGGCCACATGTGCTCGAGCTGCA 658 consensus_1309#1 ------------------------------------------------------------ consensus_1309#0 G 659 consensus_1309#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||