cluster # 132

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Anopheles gambiae
cluster # 132 cluster # 132 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_132#0 length = 657 sequences # 1

consensus_132#1 length = 421 sequences # 1

consensusID : consensus_132#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CCGAGCACACGAATTTCGGGGGAAAAAAGTGCGTTGTTGTTGTTTCGCGCTTTCGGGAAAAAAGTGTCGTGTTTCGGAATTGTTTCTCCAAATTGTCGCCTTTCTGCCAGCAGCAGCATCCTGCCTGGTCCAAGAATCCACTGCGCTCATGCCAGCGAACCGACGGAAACCGTAGCCGCGTACCGCCGTAGGAAATACATGTGAGAAATCGCCTCCCTCGAGGTGATCCGAGTAGCCAATTCCCTCAGCCTGGACCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCACCACCACCACTATGGCCATCTATTGCTGGGGCAATACGGCCCACGGCGAGCTCGGTCTCGGTGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGAGGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGATGTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAACAAAAGGCCACAGCGGCTAACATCGCTGGAAAACTACATCATCACGTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAGCTGGGGCTCGAA]

[+] EMBL BM579164             [CCGAGCACACGAATTTCGGGGGAAAAAAGTGCGTTGTTGTTGTTTCGCGCTTTCGGGAAAAAAGTGTCGTGTTTCGGAATTGTTTCTCCAAATTGTCGCCTTTCTGCCAGCAGCAGCATCCTGCCTGGTCCAAGAATCCACTGCGCTCATGCCAGCGAACCGACGGAAACCGTAGCCGCGTACCGCCGTAGGAAATACATGTGAGAAATCGCCTCCCTCGAGGTGATCCGAGTAGCCAATTCCCTCAGCCTGGACCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCACCACCACCACTATGGCCATCTATTGCTGGGGCAATACGGCCCACGGCGAGCTCGGTCTCGGTGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGAGGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGATGTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAACAAAAGGCCACAGCGGCTAACATCGCTGGAAAACTACATCATCACGTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAGCTGGGGCTCGAA]




>consensus_132#0
CCGAGCACACGAATTTCGGGGGAAAAAAGTGCGTTGTTGTTGTTTCGCGCTTTCGGGAAA
AAAGTGTCGTGTTTCGGAATTGTTTCTCCAAATTGTCGCCTTTCTGCCAGCAGCAGCATC
CTGCCTGGTCCAAGAATCCACTGCGCTCATGCCAGCGAACCGACGGAAACCGTAGCCGCG
TACCGCCGTAGGAAATACATGTGAGAAATCGCCTCCCTCGAGGTGATCCGAGTAGCCAAT
TCCCTCAGCCTGGACCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCAC
CACCACCACTATGGCCATCTATTGCTGGGGCAATACGGCCCACGGCGAGCTCGGTCTCGG
TGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGA
GGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGAT
GTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAA
CAAAAGGCCACAGCGGCTAACATCGCTGGAAAACTACATCATCACGTGCATCAGCTGCGG
TACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAGCTGGGGCTCGAA

consensusID : consensus_132#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [CCGCCCACGCGTCCGCCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCACCACCACCACTATGGCCATCTATTGCTGGGGCAATACGGTCCACGGCGAGCTCGGTCTCGGTGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGAGGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGATGTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAACAAAAGGCCACGTATGTCGAGATTTAAGCGGCTAACATCGCTGGAAAACTACATCATCACGTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAA]

[+] EMBL BM642179             [CCGCCCACGCGTCCGCCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCACCACCACCACTATGGCCATCTATTGCTGGGGCAATACGGTCCACGGCGAGCTCGGTCTCGGTGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGAGGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGATGTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAACAAAAGGCCACGTATGTCGAGATTTAAGCGGCTAACATCGCTGGAAAACTACATCATCACGTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAA]




>consensus_132#1
CCGCCCACGCGTCCGCCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCA
CCACCACCACTATGGCCATCTATTGCTGGGGCAATACGGTCCACGGCGAGCTCGGTCTCG
GTGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACG
AGGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGA
TGTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGA
ACAAAAGGCCACGTATGTCGAGATTTAAGCGGCTAACATCGCTGGAAAACTACATCATCA
CGTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTA
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_132#0      CCGAGCACACGAATTTCGGGGGAAAAAAGTGCGTTGTTGTTGTTTCGCGCTTTCGGGAAA 60
consensus_132#1      ------------------------------------------------------------
                                                                                 

consensus_132#0      AAAGTGTCGTGTTTCGGAATTGTTTCTCCAAATTGTCGCCTTTCTGCCAGCAGCAGCATC 120
consensus_132#1      ------------------------------------------------------------
                                                                                 

consensus_132#0      CTGCCTGGTCCAAGAATCCACTGCGCTCATGCCAGCGAACCGACGGAAACCGTAGCCGCG 180
consensus_132#1      ------------------------------------------------------------
                                                                                 

consensus_132#0      TACCGCCGTAGGAAATACATGTGAGAAATCGCCTCCCTCGAGGTGATCCGAGTAGCCAAT 240
consensus_132#1      -----------------------------------------------------------C 1
                                                                                 

consensus_132#0      TCCCTCAGCCTGGACCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCAC 300
consensus_132#1      CGCCCACGCGTCCGCCAGGTTGGCTTACGGGGGCACAGAAGGGCACAGCAATATCACCAC 61
                       **   ** *   **********************************************

consensus_132#0      CACCACCACTATGGCCATCTATTGCTGGGGCAATACGGCCCACGGCGAGCTCGGTCTCGG 360
consensus_132#1      CACCACCACTATGGCCATCTATTGCTGGGGCAATACGGTCCACGGCGAGCTCGGTCTCGG 121
                     ************************************** *********************

consensus_132#0      TGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGA 420
consensus_132#1      TGGGATCGAGGAGGAACAGGTGATGGTACCGCGCAAGATGGATTGGTCGCAGGCGGACGA 181
                     ************************************************************

consensus_132#0      GGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGAT 480
consensus_132#1      GGTGGTCCGGGTGGAGTGCGGCACCAGCCACACACTGTTCCTCACGAAGGAGGGCAAGAT 241
                     ************************************************************

consensus_132#0      GTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAA 540
consensus_132#1      GTACGCGTGCGGCAACAATGATCACGGTCAGCTGGGCCACGACCTCGACACGCTACCGAA 301
                     ************************************************************

consensus_132#0      CAAAAGGCCAC---------------AGCGGCTAACATCGCTGGAAAACTACATCATCAC 585
consensus_132#1      CAAAAGGCCACGTATGTCGAGATTTAAGCGGCTAACATCGCTGGAAAACTACATCATCAC 361
                     ***********               **********************************

consensus_132#0      GTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAG 645
consensus_132#1      GTGCATCAGCTGCGGTACGGCCCACTCGCTAGCCCTCACCAACTGGGGCCAGGTGTTTAA 421
                     *********************************************************** 

consensus_132#0      CTGGGGCTCGAA 657
consensus_132#1      ------------