cluster # 1328

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Anopheles gambiae
cluster # 1328 cluster # 1328 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1328#0 length = 436 sequences # 1

consensus_1328#1 length = 434 sequences # 1

consensusID : consensus_1328#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [AGGCCAGNNCTCGGCTTTAAGGGGAATGATAAGCACCGCAAAGTCCTCTGGATGGTATTTATTTTCATATCGTTTATTCGCTAGTTTTGAGTTATGGACTAAATGAGAGCAAAAGAGAGGGAGGTCGATACTAGCTAAGGAATGCACATAAAGCCAAGCAGACACTTTAATCACGCACCAATGCGATCTATTTATTGACACAGAACACAGAACTAAATATTAAAAATAAGCGCAACAAGCAGCTGCATCGATCGCTGAGAAATACTCAGCCAAAGTTGACTACGTAGAACTATGTTCTAATAGCAGGGCAAATAAGTTTGTGCGAATTTTACATTTCCTTCCCGAATCGTATTGNGTATACCTCCCGTCTCTGTGCTCTGTATATCACTGCTGTGTTGGGTNGTCTGCTTCATTGCACAACAGGAGAGGGTGTCTA]

[+] EMBL BX469102             [AGGCCAGNNCTCGGCTTTAAGGGGAATGATAAGCACCGCAAAGTCCTCTGGATGGTATTTATTTTCATATCGTTTATTCGCTAGTTTTGAGTTATGGACTAAATGAGAGCAAAAGAGAGGGAGGTCGATACTAGCTAAGGAATGCACATAAAGCCAAGCAGACACTTTAATCACGCACCAATGCGATCTATTTATTGACACAGAACACAGAACTAAATATTAAAAATAAGCGCAACAAGCAGCTGCATCGATCGCTGAGAAATACTCAGCCAAAGTTGACTACGTAGAACTATGTTCTAATAGCAGGGCAAATAAGTTTGTGCGAATTTTACATTTCCTTCCCGAATCGTATTGNGTATACCTCCCGTCTCTGTGCTCTGTATATCACTGCTGTGTTGGGTNGTCTGCTTCATTGCACAACAGGAGAGGGTGTCTA]




>consensus_1328#0
AGGCCAGNNCTCGGCTTTAAGGGGAATGATAAGCACCGCAAAGTCCTCTGGATGGTATTT
ATTTTCATATCGTTTATTCGCTAGTTTTGAGTTATGGACTAAATGAGAGCAAAAGAGAGG
GAGGTCGATACTAGCTAAGGAATGCACATAAAGCCAAGCAGACACTTTAATCACGCACCA
ATGCGATCTATTTATTGACACAGAACACAGAACTAAATATTAAAAATAAGCGCAACAAGC
AGCTGCATCGATCGCTGAGAAATACTCAGCCAAAGTTGACTACGTAGAACTATGTTCTAA
TAGCAGGGCAAATAAGTTTGTGCGAATTTTACATTTCCTTCCCGAATCGTATTGNGTATA
CCTCCCGTCTCTGTGCTCTGTATATCACTGCTGTGTTGGGTNGTCTGCTTCATTGCACAA
CAGGAGAGGGTGTCTA

consensusID : consensus_1328#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [TCTCTTTTGCTCTCATTTAGTCCATAACTCAAAACTAGCGAATAAACGATATGAAAATAAATACCATCCAGAGGACTTTCGGTGCTTATCATTCCCATTACGAAGCACTTTTTACAGCTTTTACAGGCTCTCTTACACACACACACACAACATAACCAAGGCTTACGATGGAGCTGCGTTGCAGCTACAGTCTAGAAATGAGAAACCAGATCTATGGTGATAGTAGTATGTAGGTTGATATAATGGTTGGCCCAAGCCAAAGCCAACGTGTTAGCCTATAAGCTGCGCATATGTGTTACTGTGGTAGTGTGCTACTCGGCATTTGTTCGCTAACCGAAGAAGAAACCGAACGGTGTCTCTACCTCTATATCGAATTTGAGGCCCTGCTGGTTGTCTTTCTCAAGTGAAACCAGCTGATTTCCAGTGGTGCCACG]

[+] EMBL AGA284733            [TCTCTTTTGCTCTCATTTAGTCCATAACTCAAAACTAGCGAATAAACGATATGAAAATAAATACCATCCAGAGGACTTTCGGTGCTTATCATTCCCATTACGAAGCACTTTTTACAGCTTTTACAGGCTCTCTTACACACACACACACAACATAACCAAGGCTTACGATGGAGCTGCGTTGCAGCTACAGTCTAGAAATGAGAAACCAGATCTATGGTGATAGTAGTATGTAGGTTGATATAATGGTTGGCCCAAGCCAAAGCCAACGTGTTAGCCTATAAGCTGCGCATATGTGTTACTGTGGTAGTGTGCTACTCGGCATTTGTTCGCTAACCGAAGAAGAAACCGAACGGTGTCTCTACCTCTATATCGAATTTGAGGCCCTGCTGGTTGTCTTTCTCAAGTGAAACCAGCTGATTTCCAGTGGTGCCACG]




>consensus_1328#1
TCTCTTTTGCTCTCATTTAGTCCATAACTCAAAACTAGCGAATAAACGATATGAAAATAA
ATACCATCCAGAGGACTTTCGGTGCTTATCATTCCCATTACGAAGCACTTTTTACAGCTT
TTACAGGCTCTCTTACACACACACACACAACATAACCAAGGCTTACGATGGAGCTGCGTT
GCAGCTACAGTCTAGAAATGAGAAACCAGATCTATGGTGATAGTAGTATGTAGGTTGATA
TAATGGTTGGCCCAAGCCAAAGCCAACGTGTTAGCCTATAAGCTGCGCATATGTGTTACT
GTGGTAGTGTGCTACTCGGCATTTGTTCGCTAACCGAAGAAGAAACCGAACGGTGTCTCT
ACCTCTATATCGAATTTGAGGCCCTGCTGGTTGTCTTTCTCAAGTGAAACCAGCTGATTT
CCAGTGGTGCCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1328#0      AGGCCAGNNCTCGGCTTTAAGGGGAATGATAAGCACCGCAAAGTCCTCTGGATGGTATTT 60
consensus_1328#1      -----TCTCTTTTGCTCTCATTTAGTCCATAA-CTCAAAACTAGCGAATAAACGATATGA 54
                                *  *** * *        **** * *   *    *   *  * * ***  

consensus_1328#0      ATTTTCATATCGTTTATTCGCTAGTTTTGAGTTATGGACTAAATGA--GAGCAAAAGAGA 118
consensus_1328#1      AAATAAATACCATCCAGAGGACTTTCGGTGCTTATCATTCCCATTACGAAGCACTTTTTA 114
                      *  *  *** * *  *   *    *      ****       ** *   ****      *

consensus_1328#0      GGGAGGTCG-ATACTAGCTAAGGAATGCACATAAAGCCAAGCAGACACTTTAATCACGCA 177
consensus_1328#1      CAGCTTTTACAGGCTCTCTTACACACACACACACAACATAACCAAGGCTT--ACGATGGA 172
                        *   *   *  **  ** *   *  **** * * *  * *  *  ***  *  * * *

consensus_1328#0      CCAATGCGATCTATTTATTGACACAGAACACAGAACTAAATATTAAAAATAAGCGCAACA 237
consensus_1328#1      GC--TGCGTTGCAGCTACAGTCTAGAAATGAGAAACCAGATCT--ATGGTGATAGTAGTA 228
                       *  **** *  *  **  * *    **     *** * ** *  *   * *  * *  *

consensus_1328#0      AGCAGCTGCATCGATCGCTGAGAAATACTCAGCCAAAGTTGACTACGTAGAACTATGTTC 297
consensus_1328#1      TGTAGGTTGATATAATGGTTGGC----CCAAGCCAAAGCCAAC-GTGTTAGCCTATAAGC 283
                       * ** *  **  *  * *  *     *  ********   **   **    ****   *

consensus_1328#0      TAATAGCAGG-GCAAATAAGTTTGTGCGAATTTTACATTTCCTTCCCGAATCGTATTGNG 356
consensus_1328#1      TGCGCATATGTGTTACTGTGGTAGTGTGCTACTCGGCATTTGTTCGCTAACCG-AAGAAG 342
                      *      * * *  * *  * * *** *    *     **  *** * ** ** *    *

consensus_1328#0      TATACCTCCCGTCTCTGTGC-TCTGTATATCACTGCTGTGTTGGGTNGTCTGCTTCATTG 415
consensus_1328#1      AAACCGAACGGTGTCTCTACCTCTATATCGAATTTGAGGCCCTGCTGGTTGTCTTTCTCA 402
                       *  *   * ** *** * * *** ***   * *   *     * * **   ***  *  

consensus_1328#0      CACAACAGGAGAGGGTGTCTA----------- 436
consensus_1328#1      AGTGAAACCAGCTGATTTCCAGTGGTGCCACG 434
                          * *  **  * * ** *