cluster # 1342

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Anopheles gambiae
cluster # 1342 cluster # 1342 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1342#0 length = 686 sequences # 1

consensus_1342#1 length = 684 sequences # 1

consensusID : consensus_1342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [CCGAAACATTCAGTAGGTGTGTAGTTTGATGTTTTTTCCCCCTTGTCGCTGCTTCTAAACATAGAACAGTGGAAGGAAAAAGGAAGCAACGCAAAGCAGCAACAGCACCAGCACCAGCAGCAGCATCTCGAAAAATGGCGACCTTCGTATTGGTGGTGGTGGAGAAGATCGCGCTGGCCTTATAGGAAACCTCAGCCCGAACACGCACTTGCTTGGCGCTGCGTGGGTGCTGGCCGTGCAATATTGCAATATACCCAGCAGCAGCAGCGATTGGTCATCGTCTCTCGTCCACACCGACGCACACATACGCACACACAGTGATTCCCGTGCTACTCCCAGCATCCCAGTTGCCCCGATCTGATGACCGTGTGTGTGGGGTCTGGTTTTCCTTGGCAACCTGTTTTTGCTGCTGACGGCGAGGCTGCATTTTCCTGCCAAGGGTGACCCTGCGTGCGGGAGTTTTTCTTGTAAACGGGTTTTGTCGTAGTGCCACAGGGAAGTGCCAACCATCTCCCCGGGGCCAACCCATACGTGAGTTTGTCTATGTGTGTGCGTGTTTGTGTGTGGTGCACCCTCTGCTGCCTGGCCTACTGATCGCGGCAGTGACGGTGAAATAACGGTTCGCCCCCACGACCAGTGTGTTCGCCAGAGTGTGGCGCATTTCGAAGCGACAATTTGATAAGTAA]

[+] EMBL BM616631             [CCGAAACATTCAGTAGGTGTGTAGTTTGATGTTTTTTCCCCCTTGTCGCTGCTTCTAAACATAGAACAGTGGAAGGAAAAAGGAAGCAACGCAAAGCAGCAACAGCACCAGCACCAGCAGCAGCATCTCGAAAAATGGCGACCTTCGTATTGGTGGTGGTGGAGAAGATCGCGCTGGCCTTATAGGAAACCTCAGCCCGAACACGCACTTGCTTGGCGCTGCGTGGGTGCTGGCCGTGCAATATTGCAATATACCCAGCAGCAGCAGCGATTGGTCATCGTCTCTCGTCCACACCGACGCACACATACGCACACACAGTGATTCCCGTGCTACTCCCAGCATCCCAGTTGCCCCGATCTGATGACCGTGTGTGTGGGGTCTGGTTTTCCTTGGCAACCTGTTTTTGCTGCTGACGGCGAGGCTGCATTTTCCTGCCAAGGGTGACCCTGCGTGCGGGAGTTTTTCTTGTAAACGGGTTTTGTCGTAGTGCCACAGGGAAGTGCCAACCATCTCCCCGGGGCCAACCCATACGTGAGTTTGTCTATGTGTGTGCGTGTTTGTGTGTGGTGCACCCTCTGCTGCCTGGCCTACTGATCGCGGCAGTGACGGTGAAATAACGGTTCGCCCCCACGACCAGTGTGTTCGCCAGAGTGTGGCGCATTTCGAAGCGACAATTTGATAAGTAA]




>consensus_1342#0
CCGAAACATTCAGTAGGTGTGTAGTTTGATGTTTTTTCCCCCTTGTCGCTGCTTCTAAAC
ATAGAACAGTGGAAGGAAAAAGGAAGCAACGCAAAGCAGCAACAGCACCAGCACCAGCAG
CAGCATCTCGAAAAATGGCGACCTTCGTATTGGTGGTGGTGGAGAAGATCGCGCTGGCCT
TATAGGAAACCTCAGCCCGAACACGCACTTGCTTGGCGCTGCGTGGGTGCTGGCCGTGCA
ATATTGCAATATACCCAGCAGCAGCAGCGATTGGTCATCGTCTCTCGTCCACACCGACGC
ACACATACGCACACACAGTGATTCCCGTGCTACTCCCAGCATCCCAGTTGCCCCGATCTG
ATGACCGTGTGTGTGGGGTCTGGTTTTCCTTGGCAACCTGTTTTTGCTGCTGACGGCGAG
GCTGCATTTTCCTGCCAAGGGTGACCCTGCGTGCGGGAGTTTTTCTTGTAAACGGGTTTT
GTCGTAGTGCCACAGGGAAGTGCCAACCATCTCCCCGGGGCCAACCCATACGTGAGTTTG
TCTATGTGTGTGCGTGTTTGTGTGTGGTGCACCCTCTGCTGCCTGGCCTACTGATCGCGG
CAGTGACGGTGAAATAACGGTTCGCCCCCACGACCAGTGTGTTCGCCAGAGTGTGGCGCA
TTTCGAAGCGACAATTTGATAAGTAA

consensusID : consensus_1342#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CCGCGGACGCGTGGGCTTCTAAACATAGAACAGTGGAAGGAAAAAGGAAGCAACGCAAAGCAGCAACAGCACCAGCACCAGCAGCAGCATCTCGAAAAATGGCGACCTTCGTATTGGTGGTGGTGGAGAAGATCGCGCTGGCCTTATAGGAAACCCCAGCCCGAACACGCACTTGCTCGGCGCTGCGTGGGTGCTGGCCGTGCAATATTGCAATATACCCAGCAGCAGCAGCGATTGGTCATCGTCTCTCGTCCACAACGACGCACACATACGCACACAGTGATTCCCGTGCTACTCCCAGCATCCCAGTTGCCCTGATCTGATGACCGTGTGTGTGGGGTCTGGTTTTCCTCGGCAACCTGTTTTTGCTGCTGACGGCGAGGCTGCATTTTCCTGCCAAGGGTGACCCTGCGTGCGGGAGTTTTTCTTGTAAACGGGTTTTGTCGTAGTGCCACAGGGAAGCGCCAACCATCACCCCGGGGAACCCATACGTGAGTTTGTCTATGTGTGTGCGTGTTTGTGTGTGGTGCACCCTCTGCTGCCTGGCCTACTGATCGCGACAGTGACGGTGAAATAACGGTTCGCCCCCACGACCAGTGTGTTCGCCAGAGTGTGGCGCATTTCGAAGCGACAATTTGATAAAGTAAACAGTATTTAGAAGCATCTGTGACTAAAAGGAGCCAA]

[+] EMBL BM589509             [CCGCGGACGCGTGGGCTTCTAAACATAGAACAGTGGAAGGAAAAAGGAAGCAACGCAAAGCAGCAACAGCACCAGCACCAGCAGCAGCATCTCGAAAAATGGCGACCTTCGTATTGGTGGTGGTGGAGAAGATCGCGCTGGCCTTATAGGAAACCCCAGCCCGAACACGCACTTGCTCGGCGCTGCGTGGGTGCTGGCCGTGCAATATTGCAATATACCCAGCAGCAGCAGCGATTGGTCATCGTCTCTCGTCCACAACGACGCACACATACGCACACAGTGATTCCCGTGCTACTCCCAGCATCCCAGTTGCCCTGATCTGATGACCGTGTGTGTGGGGTCTGGTTTTCCTCGGCAACCTGTTTTTGCTGCTGACGGCGAGGCTGCATTTTCCTGCCAAGGGTGACCCTGCGTGCGGGAGTTTTTCTTGTAAACGGGTTTTGTCGTAGTGCCACAGGGAAGCGCCAACCATCACCCCGGGGAACCCATACGTGAGTTTGTCTATGTGTGTGCGTGTTTGTGTGTGGTGCACCCTCTGCTGCCTGGCCTACTGATCGCGACAGTGACGGTGAAATAACGGTTCGCCCCCACGACCAGTGTGTTCGCCAGAGTGTGGCGCATTTCGAAGCGACAATTTGATAAAGTAAACAGTATTTAGAAGCATCTGTGACTAAAAGGAGCCAA]




>consensus_1342#1
CCGCGGACGCGTGGGCTTCTAAACATAGAACAGTGGAAGGAAAAAGGAAGCAACGCAAAG
CAGCAACAGCACCAGCACCAGCAGCAGCATCTCGAAAAATGGCGACCTTCGTATTGGTGG
TGGTGGAGAAGATCGCGCTGGCCTTATAGGAAACCCCAGCCCGAACACGCACTTGCTCGG
CGCTGCGTGGGTGCTGGCCGTGCAATATTGCAATATACCCAGCAGCAGCAGCGATTGGTC
ATCGTCTCTCGTCCACAACGACGCACACATACGCACACAGTGATTCCCGTGCTACTCCCA
GCATCCCAGTTGCCCTGATCTGATGACCGTGTGTGTGGGGTCTGGTTTTCCTCGGCAACC
TGTTTTTGCTGCTGACGGCGAGGCTGCATTTTCCTGCCAAGGGTGACCCTGCGTGCGGGA
GTTTTTCTTGTAAACGGGTTTTGTCGTAGTGCCACAGGGAAGCGCCAACCATCACCCCGG
GGAACCCATACGTGAGTTTGTCTATGTGTGTGCGTGTTTGTGTGTGGTGCACCCTCTGCT
GCCTGGCCTACTGATCGCGACAGTGACGGTGAAATAACGGTTCGCCCCCACGACCAGTGT
GTTCGCCAGAGTGTGGCGCATTTCGAAGCGACAATTTGATAAAGTAAACAGTATTTAGAA
GCATCTGTGACTAAAAGGAGCCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1342#0      CCGAAACATTCAGTAGGTGTGTAGTTTGATGTTTTTTCCCCCTTGTCGCTGCTTCTAAAC 60
consensus_1342#1      ------------------------------------CCGCGGACGCGTGGGCTTCTAAAC 24
                                                           * *    *     **********

consensus_1342#0      ATAGAACAGTGGAAGGAAAAAGGAAGCAACGCAAAGCAGCAACAGCACCAGCACCAGCAG 120
consensus_1342#1      ATAGAACAGTGGAAGGAAAAAGGAAGCAACGCAAAGCAGCAACAGCACCAGCACCAGCAG 84
                      ************************************************************

consensus_1342#0      CAGCATCTCGAAAAATGGCGACCTTCGTATTGGTGGTGGTGGAGAAGATCGCGCTGGCCT 180
consensus_1342#1      CAGCATCTCGAAAAATGGCGACCTTCGTATTGGTGGTGGTGGAGAAGATCGCGCTGGCCT 144
                      ************************************************************

consensus_1342#0      TATAGGAAACCTCAGCCCGAACACGCACTTGCTTGGCGCTGCGTGGGTGCTGGCCGTGCA 240
consensus_1342#1      TATAGGAAACCCCAGCCCGAACACGCACTTGCTCGGCGCTGCGTGGGTGCTGGCCGTGCA 204
                      *********** ********************* **************************

consensus_1342#0      ATATTGCAATATACCCAGCAGCAGCAGCGATTGGTCATCGTCTCTCGTCCACACCGACGC 300
consensus_1342#1      ATATTGCAATATACCCAGCAGCAGCAGCGATTGGTCATCGTCTCTCGTCCACAACGACGC 264
                      ***************************************************** ******

consensus_1342#0      ACACATACGCACACACAGTGATTCCCGTGCTACTCCCAGCATCCCAGTTGCCCCGATCTG 360
consensus_1342#1      ACACATACGCACACA--GTGATTCCCGTGCTACTCCCAGCATCCCAGTTGCCCTGATCTG 322
                      ***************  ************************************ ******

consensus_1342#0      ATGACCGTGTGTGTGGGGTCTGGTTTTCCTTGGCAACCTGTTTTTGCTGCTGACGGCGAG 420
consensus_1342#1      ATGACCGTGTGTGTGGGGTCTGGTTTTCCTCGGCAACCTGTTTTTGCTGCTGACGGCGAG 382
                      ****************************** *****************************

consensus_1342#0      GCTGCATTTTCCTGCCAAGGGTGACCCTGCGTGCGGGAGTTTTTCTTGTAAACGGGTTTT 480
consensus_1342#1      GCTGCATTTTCCTGCCAAGGGTGACCCTGCGTGCGGGAGTTTTTCTTGTAAACGGGTTTT 442
                      ************************************************************

consensus_1342#0      GTCGTAGTGCCACAGGGAAGTGCCAACCATCTCCCCGGGGCCAACCCATACGTGAGTTTG 540
consensus_1342#1      GTCGTAGTGCCACAGGGAAGCGCCAACCATCACCCCGGGG--AACCCATACGTGAGTTTG 500
                      ******************** ********** ********  ******************

consensus_1342#0      TCTATGTGTGTGCGTGTTTGTGTGTGGTGCACCCTCTGCTGCCTGGCCTACTGATCGCGG 600
consensus_1342#1      TCTATGTGTGTGCGTGTTTGTGTGTGGTGCACCCTCTGCTGCCTGGCCTACTGATCGCGA 560
                      *********************************************************** 

consensus_1342#0      CAGTGACGGTGAAATAACGGTTCGCCCCCACGACCAGTGTGTTCGCCAGAGTGTGGCGCA 660
consensus_1342#1      CAGTGACGGTGAAATAACGGTTCGCCCCCACGACCAGTGTGTTCGCCAGAGTGTGGCGCA 620
                      ************************************************************

consensus_1342#0      TTTCGAAGCGACAATTTGATAA-GTAA--------------------------------- 686
consensus_1342#1      TTTCGAAGCGACAATTTGATAAAGTAAACAGTATTTAGAAGCATCTGTGACTAAAAGGAG 680
                      ********************** ****                                 

consensus_1342#0      ----
consensus_1342#1      CCAA 684