These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [CCGATTCTTTTCTTACACGCACACATGAACACACACTCAAACACACACGCAAACTACAGGAGCAACGTTACAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGCGGCACCAGCACCGTTGGTGCCGGGTGGTGCCGACGGTGAGCTCAACGGAACCGATGCAGACGACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCCAGCCCCGTACTACTGCCCGGCCATCTGAAGAGTAGCATACAGTTTTTCGAAAGCCTCAAGAACAAACCGTAATAGCCAACCGGACACGAGAGCAGCAAAACACTCGTCTGGATGGGGATCACACTGCAAACTCACGTTGAAAGTGTACGACCTTTTTTTGTGCCATTTGTGTAGTCGCCCCAGCTGGAAGCGTCATTTAGTCATCCTTCACATCCTTCACACACACACACACATACATACACACTTACATACTCACCTGTCGCATCGTTGTCCTTCGTCATCGCTCACTCATACTTGGTAGGACTTCCGTTACGCCCCCTCGTGTTAAGGCTTTGTTTTAGGTTCGCGCGCGCGTGTGTGTTTTTGTTTCTGTGTGGTAGGCCATCTTGTTTCCTCTCGCACCAGTGGCGACATTTTTCAAGAGTCCCA] [+] EMBL BM611456 [CCGATTCTTTTCTTACACGCACACATGAACACACACTCAAACACACACGCAAACTACAGGAGCAACGTTACAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGCGGCACCAGCACCGTTGGTGCCGGGTGGTGCCGACGGTGAGCTCAACGGAACCGATGCAGACGACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCCAGCCCCGTACTACTGCCCGGCCATCTGAAGAGTAGCATACAGTTTTTCGAAAGCCTCAAGAACAAACCGTAATAGCCAACCGGACACGAGAGCAGCAAAACACTCGTCTGGATGGGGATCACACTGCAAACTCACGTTGAAAGTGTACGACCTTTTTTTGTGCCATTTGTGTAGTCGCCCCAGCTGGAAGCGTCATTTAGTCATCCTTCACATCCTTCACACACACACACACATACATACACACTTACATACTCACCTGTCGCATCGTTGTCCTTCGTCATCGCTCACTCATACTTGGTAGGACTTCCGTTACGCCCCCTCGTGTTAAGGCTTTGTTTTAGGTTCGCGCGCGCGTGTGTGTTTTTGTTTCTGTGTGGTAGGCCATCTTGTTTCCTCTCGCACCAGTGGCGACATTTTTCAAGAGTCCCA] consensusID : consensus_1362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [CCGTTTTATTTATGGTAATGATGACCATGATGATGATGATGGTGGAATAAAAGGTCAAGCTTAGAAAGGACTTTATCCGCCAGTCGTCCGATGTGCTGAACGAGGAAGGCATGCCCAACACGAAGGGTCAGCGGCAGTACAGTAGCACGAGCAGCATAGCGGTGCGGGACGAGATACGTGAGATCCGGAAGCTCAACCTGGAAGCGTACCGACAGTCGACGTACTACCCGATGGCTCCCGGGCACAGCATAACGGCGCGCAGCCTGTCGAAGCAAATTCGTGAGCATAAGAGCAACGTTACAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGCGGCACCAGCACCGTTGGTGCCGGGTGGTGCCGATGGTGAGCTCAACGGAACCGATGCAGACGACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCTAGCCCCGTACTACTGCCCGGCCATCTGAAGAGTAGC] [+] EMBL BM611098 [CCGTTTTATTTATGGTAATGATGACCATGATGATGATGATGGTGGAATAAAAGGTCAAGCTTAGAAAGGACTTTATCCGCCAGTCGTCCGATGTGCTGAACGAGGAAGGCATGCCCAACACGAAGGGTCAGCGGCAGTACAGTAGCACGAGCAGCATAGCGGTGCGGGACGAGATACGTGAGATCCGGAAGCTCAACCTGGAAGCGTACCGACAGTCGACGTACTACCCGATGGCTCCCGGGCACAGCATAACGGCGCGCAGCCTGTCGAAGCAAATTCGTGAGCATAAGAGCAACGTTACAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGCGGCACCAGCACCGTTGGTGCCGGGTGGTGCCGATGGTGAGCTCAACGGAACCGATGCAGACGACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCTAGCCCCGTACTACTGCCCGGCCATCTGAAGAGTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1362#0 CCGATTCTTTTCTTACACGCACA--CATGAACAC----ACACTCAAACACACACGCAAAC 54 consensus_1362#1 CCGTTTTATTTATGGTAATGATGACCATGATGATGATGATGGTGGAATAAAAGGTCAAGC 60 *** ** *** * * * ***** * * * ** * * *** * consensus_1362#0 TACAGGAGCAACGTTA-CAGACGACCATAAGGTGGGCCACCACCAGCAGGAGGAGCAAGC 113 consensus_1362#1 T-TAGAAAGGACTTTATCCGCCAGTCGTCCGATGTGCTG-----AACGAGGAAGGCATGC 114 * ** * ** *** * * * * * * ** ** * * * *** ** consensus_1362#0 GGCACCAGCACCGTTGGTGCCGG-GTGGTGCCGACGGTGAGCTCAACGGAACCGATGCAG 172 consensus_1362#1 CCAACACGAAGGGTCAGCGGCAGTACAGTAGC-ACGAGCAGCATAGCGGTGCGGGACGAG 173 ** * * ** * * * * ** * *** *** * *** * * ** consensus_1362#0 A--CGACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCCAGCCC-CGTACTACTGCCCG 229 consensus_1362#1 ATACGTGAGATCCGGAAGCTCAACCTGGAAGCGTACCGACAGTCGACGTACTACCCGATG 233 * ** * **** ** * * ***** *** *** * ******** * consensus_1362#0 GCCATCTGAAGAGTAGCATACAGTTTTTCGAAAGCCTCAAGAACAAACCGTAATAGCCAA 289 consensus_1362#1 GC--TCCCGGGCACAGCATAACGGCGCGC---AGCCT---------GTCGAAGCAAATTC 279 ** ** * ****** * * ***** ** * * consensus_1362#0 CCGGACACGAGAGCAGCAAAACACTCGTCTGGATGGGGATCACACTGCAAACTCACGTTG 349 consensus_1362#1 GTGAGCATAAGAGCAACGTTACAGACGACCATAAGGTGGGC-CACCACCAGCAGGAGGAG 338 * ** ****** * *** ** * * ** * * *** * * * * * consensus_1362#0 AAAGTG-TACGACCTTTTTTTGTGCCATTTGTGTAGTCGCCCCAGCTGGAAGCGTCATTT 408 consensus_1362#1 CAAGCGGCACCAGCACCGTTGGTGCCG-------GGTGGTGCCGATGGTGAGCTCAACGG 391 *** * ** * * ** ***** ** * ** * *** * consensus_1362#0 AGTCATCCTTCACATCCTTCACACACACACACACATACATACACACTTACATACTCACCT 468 consensus_1362#1 AACCGATGCAGACG------ACGAACCCGGCCATGCATCTCCGGAGCGTCCCGCTAGCC- 444 * * ** ** ** * ** * * * * * ** ** consensus_1362#0 GTCGCATCGTTGTCCTTCGTCATCGCTCACTCATACTTGGTAGGACTTCCGTTACGCCCC 528 consensus_1362#1 -CCGTACTACTGCCCG--GCCATC--TGAAGAGTAGC----------------------- 476 ** * ** ** * **** * * ** consensus_1362#0 CTCGTGTTAAGGCTTTGTTTTAGGTTCGCGCGCGCGTGTGTGTTTTTGTTTCTGTGTGGT 588 consensus_1362#1 ------------------------------------------------------------ consensus_1362#0 AGGCCATCTTGTTTCCTCTCGCACCAGTGGCGACATTTTTCAAGAGTCCCA 639 consensus_1362#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||