cluster # 1376

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Anopheles gambiae
cluster # 1376 cluster # 1376 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1376#0 length = 666 sequences # 1

consensus_1376#1 length = 204 sequences # 1

consensusID : consensus_1376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CCGCGGGGGTTTAGTAGCGTCCGATAAGCGAACATTGTGTTGCCCCAAAACAACGACCAACGATGGGCCGCTGCTGCTCCAACTGGTCACCGACGGGCAAACGGCTCTGTGCCCTCGGCAGCACGACCGCGCTGTGCGTGTTTGCCCTCGCTCTCGGTCTGGTGTGGCCCGCGCTAATATGGCAGATTGCGAAGCGCGAGTTCGTGCTGGAACCCGGCACCGAGGTGTACAAGAACTGGATAGAGCCACCGATCGACACCTACCTGGAGCTGTACCTGTGGAACTGGACGAACGCGGACGCGTACCTGACGGAGAAGCCGCACCTGGAGCAGCTCGGGCCGTACACATTCCGGGAGGTTCACGAGCGCGTCAATCTCAAGTGGAACGATAACGACACGCTGACGTTCCAGCAGCGCCGCATCTGGTACCACGTGCCGGAGCTGTCGGTCGGTGACTACGAGACGGACCGTGTCGTTACCATCAATCCGGTACTTCTGACCGTTGGATACGCGCTGCGCAATGAGCCGGTATTCCTGTTCTACGTCGATGGCATCATCATGCAGAACGATTTGGCCACCACGCCCTTTTACGATGTGCTGGTGCGTGAGATGATATTCGAAGGGTACGATGACAAGCTGCTGACGAGTCTGCTCGCCCTGATCGAAT]

[+] EMBL BM581869             [CCGCGGGGGTTTAGTAGCGTCCGATAAGCGAACATTGTGTTGCCCCAAAACAACGACCAACGATGGGCCGCTGCTGCTCCAACTGGTCACCGACGGGCAAACGGCTCTGTGCCCTCGGCAGCACGACCGCGCTGTGCGTGTTTGCCCTCGCTCTCGGTCTGGTGTGGCCCGCGCTAATATGGCAGATTGCGAAGCGCGAGTTCGTGCTGGAACCCGGCACCGAGGTGTACAAGAACTGGATAGAGCCACCGATCGACACCTACCTGGAGCTGTACCTGTGGAACTGGACGAACGCGGACGCGTACCTGACGGAGAAGCCGCACCTGGAGCAGCTCGGGCCGTACACATTCCGGGAGGTTCACGAGCGCGTCAATCTCAAGTGGAACGATAACGACACGCTGACGTTCCAGCAGCGCCGCATCTGGTACCACGTGCCGGAGCTGTCGGTCGGTGACTACGAGACGGACCGTGTCGTTACCATCAATCCGGTACTTCTGACCGTTGGATACGCGCTGCGCAATGAGCCGGTATTCCTGTTCTACGTCGATGGCATCATCATGCAGAACGATTTGGCCACCACGCCCTTTTACGATGTGCTGGTGCGTGAGATGATATTCGAAGGGTACGATGACAAGCTGCTGACGAGTCTGCTCGCCCTGATCGAAT]




>consensus_1376#0
CCGCGGGGGTTTAGTAGCGTCCGATAAGCGAACATTGTGTTGCCCCAAAACAACGACCAA
CGATGGGCCGCTGCTGCTCCAACTGGTCACCGACGGGCAAACGGCTCTGTGCCCTCGGCA
GCACGACCGCGCTGTGCGTGTTTGCCCTCGCTCTCGGTCTGGTGTGGCCCGCGCTAATAT
GGCAGATTGCGAAGCGCGAGTTCGTGCTGGAACCCGGCACCGAGGTGTACAAGAACTGGA
TAGAGCCACCGATCGACACCTACCTGGAGCTGTACCTGTGGAACTGGACGAACGCGGACG
CGTACCTGACGGAGAAGCCGCACCTGGAGCAGCTCGGGCCGTACACATTCCGGGAGGTTC
ACGAGCGCGTCAATCTCAAGTGGAACGATAACGACACGCTGACGTTCCAGCAGCGCCGCA
TCTGGTACCACGTGCCGGAGCTGTCGGTCGGTGACTACGAGACGGACCGTGTCGTTACCA
TCAATCCGGTACTTCTGACCGTTGGATACGCGCTGCGCAATGAGCCGGTATTCCTGTTCT
ACGTCGATGGCATCATCATGCAGAACGATTTGGCCACCACGCCCTTTTACGATGTGCTGG
TGCGTGAGATGATATTCGAAGGGTACGATGACAAGCTGCTGACGAGTCTGCTCGCCCTGA
TCGAAT

consensusID : consensus_1376#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [ATGAGCCGGAATTCCTGTTCTATGTCGATGGCATCATCATGTTGAACGGTTTGGCCACCACGCCCTTTTACGATGTGCTGGTGCGTGAGATGATATTCCAGGGGTACNATGACACGCTGCTGACGAATCTGCTCGCCCTGCTCGCATTGCTTCCGGAGGAATCGCGGCCACCGATCGATCTACCGCCGTACGATCTATTCGGTT]

[+] EMBL BX620770             [ATGAGCCGGAATTCCTGTTCTATGTCGATGGCATCATCATGTTGAACGGTTTGGCCACCACGCCCTTTTACGATGTGCTGGTGCGTGAGATGATATTCCAGGGGTACNATGACACGCTGCTGACGAATCTGCTCGCCCTGCTCGCATTGCTTCCGGAGGAATCGCGGCCACCGATCGATCTACCGCCGTACGATCTATTCGGTT]




>consensus_1376#1
ATGAGCCGGAATTCCTGTTCTATGTCGATGGCATCATCATGTTGAACGGTTTGGCCACCA
CGCCCTTTTACGATGTGCTGGTGCGTGAGATGATATTCCAGGGGTACNATGACACGCTGC
TGACGAATCTGCTCGCCCTGCTCGCATTGCTTCCGGAGGAATCGCGGCCACCGATCGATC
TACCGCCGTACGATCTATTCGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1376#0      CCGCGGGGGTTTAGTAGCGTCCGATAAGCGAACATTGTGTTGCCCCAAAACAACGACCAA 60
consensus_1376#1      ------------------------------------------------------------
                                                                                  

consensus_1376#0      CGATGGGCCGCTGCTGCTCCAACTGGTCACCGACGGGCAAACGGCTCTGTGCCCTCGGCA 120
consensus_1376#1      ------------------------------------------------------------
                                                                                  

consensus_1376#0      GCACGACCGCGCTGTGCGTGTTTGCCCTCGCTCTCGGTCTGGTGTGGCCCGCGCTAATAT 180
consensus_1376#1      ------------------------------------------------------------
                                                                                  

consensus_1376#0      GGCAGATTGCGAAGCGCGAGTTCGTGCTGGAACCCGGCACCGAGGTGTACAAGAACTGGA 240
consensus_1376#1      ------------------------------------------------------------
                                                                                  

consensus_1376#0      TAGAGCCACCGATCGACACCTACCTGGAGCTGTACCTGTGGAACTGGACGAACGCGGACG 300
consensus_1376#1      ------------------------------------------------------------
                                                                                  

consensus_1376#0      CGTACCTGACGGAGAAGCCGCACCTGGAGCAGCTCGGGCCGTACACATTCCGGGAGGTTC 360
consensus_1376#1      ------------------------------------------------------------
                                                                                  

consensus_1376#0      ACGAGCGCGTCAATCTCAAGTGGAACGATAACGACACGCTGACGTTCCAGCAGCGCCGCA 420
consensus_1376#1      ------------------------------------------------------------
                                                                                  

consensus_1376#0      TCTGGTACCACGTGCCGGAGCTGTCGGTCGGTGACTACGAGACGGACCGTGTCGTTACCA 480
consensus_1376#1      ------------------------------------------------------------
                                                                                  

consensus_1376#0      TCAATCCGGTACTTCTGACCGTTGGATACGCGCTGCGCAATGAGCCGGTATTCCTGTTCT 540
consensus_1376#1      ---------------------------------------ATGAGCCGGAATTCCTGTTCT 21
                                                             ********* ***********

consensus_1376#0      ACGTCGATGGCATCATCATGCAGAACGATTTGGCCACCACGCCCTTTTACGATGTGCTGG 600
consensus_1376#1      ATGTCGATGGCATCATCATGTTGAACGGTTTGGCCACCACGCCCTTTTACGATGTGCTGG 81
                      * ******************  ***** ********************************

consensus_1376#0      TGCGTGAGATGATATTCGAAGGGTACGATGACAAGCTGCTGACGAGTCTGCTCGCCCTGA 660
consensus_1376#1      TGCGTGAGATGATATTCCAGGGGTACNATGACACGCTGCTGACGAATCTGCTCGCCCTGC 141
                      ***************** * ****** ****** *********** ************* 

consensus_1376#0      TCGAAT------------------------------------------------------ 666
consensus_1376#1      TCGCATTGCTTCCGGAGGAATCGCGGCCACCGATCGATCTACCGCCGTACGATCTATTCG 201
                      *** **                                                      

consensus_1376#0      ---
consensus_1376#1      GTT 204