cluster # 1419

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1419 cluster # 1419 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1419#0 length = 698 sequences # 1

consensus_1419#1 length = 273 sequences # 1

consensusID : consensus_1419#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 698
fasta sequence

                              [CCGAGCTGGCATTCCGGCTAGCAAAGGGGGCCGCTCATCGGTAAATAGCTGGAATTAAGTTTTCGCAGTGTTTTTGGGTGCTCGAAATTATGTCCGCGCTTAAAAGTAACGCGGTCGTCGTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGCGACGAGACGTACAATTACTGGTAGCCGTTGCACTATCTGCTTAAGGGCAAAGGTTTTCAAACATGGGAATACAGTCCCGAATTTGCCTTGCGGTCCTACAGCTACCTATGGCTACACGGACTGCCGGCGAAAGTGTTGCAGCTGGTGACGGATAATGGTGTTCTTATTTTCTACTTCGTCCGGTGTCTACTGGCTGTAACTTGTGCCTTGCTCGAGTATCGCCTGTACAGGATTTTGGGACGGAAATGTGGCGGCGGTGTGGCTAGTCTGTGGCTGCTATTCCAGCTTACCAGTGCCGGAATGTTTATCTCTAGCGCTGCGCTGTTGCCCAGCAGTTTTTCCATGTACATTACCCTAGCAACGATGGCTGCGTGGCTGAATGAAGATACGCAAACGGCTATTGCGGTAACAGCATTTTCCGGACTGATTGGTTGGCCTTTCGCTGTTATAGTGGCCGTTCCCTTCGTTCTCGAGCTGCTTTTTAGAAAAAGAAAGTTTTTGGATTTCTTTAAAAATGCC]

[+] EMBL BM581883             [CCGAGCTGGCATTCCGGCTAGCAAAGGGGGCCGCTCATCGGTAAATAGCTGGAATTAAGTTTTCGCAGTGTTTTTGGGTGCTCGAAATTATGTCCGCGCTTAAAAGTAACGCGGTCGTCGTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGCGACGAGACGTACAATTACTGGTAGCCGTTGCACTATCTGCTTAAGGGCAAAGGTTTTCAAACATGGGAATACAGTCCCGAATTTGCCTTGCGGTCCTACAGCTACCTATGGCTACACGGACTGCCGGCGAAAGTGTTGCAGCTGGTGACGGATAATGGTGTTCTTATTTTCTACTTCGTCCGGTGTCTACTGGCTGTAACTTGTGCCTTGCTCGAGTATCGCCTGTACAGGATTTTGGGACGGAAATGTGGCGGCGGTGTGGCTAGTCTGTGGCTGCTATTCCAGCTTACCAGTGCCGGAATGTTTATCTCTAGCGCTGCGCTGTTGCCCAGCAGTTTTTCCATGTACATTACCCTAGCAACGATGGCTGCGTGGCTGAATGAAGATACGCAAACGGCTATTGCGGTAACAGCATTTTCCGGACTGATTGGTTGGCCTTTCGCTGTTATAGTGGCCGTTCCCTTCGTTCTCGAGCTGCTTTTTAGAAAAAGAAAGTTTTTGGATTTCTTTAAAAATGCC]




>consensus_1419#0
CCGAGCTGGCATTCCGGCTAGCAAAGGGGGCCGCTCATCGGTAAATAGCTGGAATTAAGT
TTTCGCAGTGTTTTTGGGTGCTCGAAATTATGTCCGCGCTTAAAAGTAACGCGGTCGTCG
TGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGCG
ACGAGACGTACAATTACTGGTAGCCGTTGCACTATCTGCTTAAGGGCAAAGGTTTTCAAA
CATGGGAATACAGTCCCGAATTTGCCTTGCGGTCCTACAGCTACCTATGGCTACACGGAC
TGCCGGCGAAAGTGTTGCAGCTGGTGACGGATAATGGTGTTCTTATTTTCTACTTCGTCC
GGTGTCTACTGGCTGTAACTTGTGCCTTGCTCGAGTATCGCCTGTACAGGATTTTGGGAC
GGAAATGTGGCGGCGGTGTGGCTAGTCTGTGGCTGCTATTCCAGCTTACCAGTGCCGGAA
TGTTTATCTCTAGCGCTGCGCTGTTGCCCAGCAGTTTTTCCATGTACATTACCCTAGCAA
CGATGGCTGCGTGGCTGAATGAAGATACGCAAACGGCTATTGCGGTAACAGCATTTTCCG
GACTGATTGGTTGGCCTTTCGCTGTTATAGTGGCCGTTCCCTTCGTTCTCGAGCTGCTTT
TTAGAAAAAGAAAGTTTTTGGATTTCTTTAAAAATGCC

consensusID : consensus_1419#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [GGCAGATCGCACGAGGGCAGCTAGCAAGGGGCGNTCATCGGTAATAGCTGGAATTAGTGTTCGCAGTGTNTTGGGTGCTCGGAATTATAGTCCGCGCTTAAAAGTAACGCGGTCGTCGTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGCGACGAGACGTACAATTACTGGGAGCCGTTGCACTATCTGCTTAAGGGCCAAGGTTTTCAACATGGGAATACAGTCCCGAATTTGCCTTGCGGCCTA]

[+] EMBL BX468225             [GGCAGATCGCACGAGGGCAGCTAGCAAGGGGCGNTCATCGGTAATAGCTGGAATTAGTGTTCGCAGTGTNTTGGGTGCTCGGAATTATAGTCCGCGCTTAAAAGTAACGCGGTCGTCGTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGCGACGAGACGTACAATTACTGGGAGCCGTTGCACTATCTGCTTAAGGGCCAAGGTTTTCAACATGGGAATACAGTCCCGAATTTGCCTTGCGGCCTA]




>consensus_1419#1
GGCAGATCGCACGAGGGCAGCTAGCAAGGGGCGNTCATCGGTAATAGCTGGAATTAGTGT
TCGCAGTGTNTTGGGTGCTCGGAATTATAGTCCGCGCTTAAAAGTAACGCGGTCGTCGTG
TTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGCGAC
GAGACGTACAATTACTGGGAGCCGTTGCACTATCTGCTTAAGGGCCAAGGTTTTCAACAT
GGGAATACAGTCCCGAATTTGCCTTGCGGCCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1419#0      CCGAGCTGGCATTCCGGCTAGCAAAGGGGGCCGCTCATCGGTAAATAGCTGGAATTAAGT 60
consensus_1419#1      GGCAGATCGCACGAGGGCAGCTAGCAAGGGGCGNTCATCGGTAA-TAGCTGGAATTA-GT 58
                         ** * ***    ***    *    *** ** ********** ************ **

consensus_1419#0      TTTCGCAGTGTTTTTGGGTGCTCGAAATTAT-GTCCGCGCTTAAAAGTAACGCGGTCGTC 119
consensus_1419#1      GTTCGCAGTGTNTT-GGGTGCTCGGAATTATAGTCCGCGCTTAAAAGTAACGCGGTCGTC 117
                       ********** ** ********* ****** ****************************

consensus_1419#0      GTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGC 179
consensus_1419#1      GTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGC 177
                      ************************************************************

consensus_1419#0      GACGAGACGTACAATTACTGGTAGCCGTTGCACTATCTGCTTAAGGGCAAAGGTTTTCAA 239
consensus_1419#1      GACGAGACGTACAATTACTGGGAGCCGTTGCACTATCTGCTTAAGGGCCAAGGTTTTCAA 237
                      ********************* ************************** ***********

consensus_1419#0      ACATGGGAATACAGTCCCGAATTTGCCTTGCGGTCCTACAGCTACCTATGGCTACACGGA 299
consensus_1419#1      -CATGGGAATACAGTCCCGAATTTGCCTTGCGG-CCTA---------------------- 273
                       ******************************** ****                      

consensus_1419#0      CTGCCGGCGAAAGTGTTGCAGCTGGTGACGGATAATGGTGTTCTTATTTTCTACTTCGTC 359
consensus_1419#1      ------------------------------------------------------------
                                                                                  

consensus_1419#0      CGGTGTCTACTGGCTGTAACTTGTGCCTTGCTCGAGTATCGCCTGTACAGGATTTTGGGA 419
consensus_1419#1      ------------------------------------------------------------
                                                                                  

consensus_1419#0      CGGAAATGTGGCGGCGGTGTGGCTAGTCTGTGGCTGCTATTCCAGCTTACCAGTGCCGGA 479
consensus_1419#1      ------------------------------------------------------------
                                                                                  

consensus_1419#0      ATGTTTATCTCTAGCGCTGCGCTGTTGCCCAGCAGTTTTTCCATGTACATTACCCTAGCA 539
consensus_1419#1      ------------------------------------------------------------
                                                                                  

consensus_1419#0      ACGATGGCTGCGTGGCTGAATGAAGATACGCAAACGGCTATTGCGGTAACAGCATTTTCC 599
consensus_1419#1      ------------------------------------------------------------
                                                                                  

consensus_1419#0      GGACTGATTGGTTGGCCTTTCGCTGTTATAGTGGCCGTTCCCTTCGTTCTCGAGCTGCTT 659
consensus_1419#1      ------------------------------------------------------------
                                                                                  

consensus_1419#0      TTTAGAAAAAGAAAGTTTTTGGATTTCTTTAAAAATGCC 698
consensus_1419#1      ---------------------------------------