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Anopheles gambiae
cluster # 145 cluster # 145       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_145#0 length = 734 sequences # 1  
consensus_145#1 length = 609 sequences # 1  

consensusID : consensus_145#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 734
fasta sequence
                              [GCAGATCCCCGCGGTTATGGATAAGGTCCACCAGAGCATGCTCCATATGGTGTNTCCCACTGGAATCAGTTCCCGCCCATGAACCCGCTGTGGCACTACGATCCTAGGTTTTGCCATCTTCATGCTACGGAATGATCTACGATGACCGGTAACGGTTGCGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCGTACTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGGCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCATGACGATTGATTGCCTTTGAACCGNTACAAGTCATCCGTGAAAGGGTACTCGCGCGGCAAGCCGATTAGACAACCAACCGGTGGCCCTGNTAGCNGCATTACTAGGGCCGTGTAGGGTGTACGCGCTGTANCTNGGGACTCTAGGGCCCCGCCTGNNCACAGACATGGGAACCGGATACGTTGCCCGGGCAGGGCAACCCATGAACACCGCACTTGAACGGGGAAAGCGGAACTAACCTGAACCCCCAGAAACGCTGGGCTTGGNNAACNCNGCTCCGCTCACNACTCAATCCCATACCTAATTGCCCCANNCCTNTCACCGCTGTTACCTGGCGCNCTGGNCCGGGCTCGCATTCGGACCCCA]

[+] EMBL AL692446             [GCAGATCCCCGCGGTTATGGATAAGGTCCACCAGAGCATGCTCCATATGGTGTNTCCCACTGGAATCAGTTCCCGCCCATGAACCCGCTGTGGCACTACGATCCTAGGTTTTGCCATCTTCATGCTACGGAATGATCTACGATGACCGGTAACGGTTGCGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCGTACTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGGCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCATGACGATTGATTGCCTTTGAACCGNTACAAGTCATCCGTGAAAGGGTACTCGCGCGGCAAGCCGATTAGACAACCAACCGGTGGCCCTGNTAGCNGCATTACTAGGGCCGTGTAGGGTGTACGCGCTGTANCTNGGGACTCTAGGGCCCCGCCTGNNCACAGACATGGGAACCGGATACGTTGCCCGGGCAGGGCAACCCATGAACACCGCACTTGAACGGGGAAAGCGGAACTAACCTGAACCCCCAGAAACGCTGGGCTTGGNNAACNCNGCTCCGCTCACNACTCAATCCCATACCTAATTGCCCCANNCCTNTCACCGCTGTTACCTGGCGCNCTGGNCCGGGCTCGCATTCGGACCCCA]


>consensus_145#0 GCAGATCCCCGCGGTTATGGATAAGGTCCACCAGAGCATGCTCCATATGGTGTNTCCCAC TGGAATCAGTTCCCGCCCATGAACCCGCTGTGGCACTACGATCCTAGGTTTTGCCATCTT CATGCTACGGAATGATCTACGATGACCGGTAACGGTTGCGTGATGTACATCTTCACCAAC ACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCGTACTCCGATTTC TTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACC TTTGGGCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCG ATCTGGACCATGACGATTGATTGCCTTTGAACCGNTACAAGTCATCCGTGAAAGGGTACT CGCGCGGCAAGCCGATTAGACAACCAACCGGTGGCCCTGNTAGCNGCATTACTAGGGCCG TGTAGGGTGTACGCGCTGTANCTNGGGACTCTAGGGCCCCGCCTGNNCACAGACATGGGA ACCGGATACGTTGCCCGGGCAGGGCAACCCATGAACACCGCACTTGAACGGGGAAAGCGG AACTAACCTGAACCCCCAGAAACGCTGGGCTTGGNNAACNCNGCTCCGCTCACNACTCAA TCCCATACCTAATTGCCCCANNCCTNTCACCGCTGTTACCTGGCGCNCTGGNCCGGGCTC GCATTCGGACCCCA



consensusID : consensus_145#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence
                              [CCGGCAACACGCATCCAGTCCCGTGTTGTGTGCGTCGTTGGAAGAGGAACAGGAAATCGAAAACAACCAAAAACAACACACACACAGAGTGCAATTGCAAGGCGAGGATCAGATAACAAAAACAGGTATAGTTTGTCGTTGAAGCTGGTACCCCCATTTGCGGACTTGCAGACTTCAGGTTGTAGAATGTTGTAGCCAGGAATGAGTGCAGAAAACCTGAAACGAAAAGGGAAAGTGATCGCACAGAAACCGGGAGTGATCCCGTGGTCGTGAGGCGGCGAGAAGATCAGCACGATCGCACGATCGAGTTTTGCAAACGGAAAACGGAGTGAAAGTGCCCGAGAGTGTGCTTGTGTGTGTGTGTGCATCGGTCGTTGCTTGGTGCCAGTTGTGATTTGAAGCTGTTTTGCCCTTATGTTTAGTGATTTAGTTGCTCCTTTAATTCTGGTTGTGACTCGTACTGTGGAAGTGTACTTTTAAGTTGAACTTTTCCTTTTATTTGTGACCATATTCTTATCGTGTCTGCTCGTTATGTTTTCCAGTTGAATAAGATACACCAGCAAAACCACTCAAATAAACACACACTCTCCAAAATGAACCCCGGTGGTA]

[+] EMBL BM632426             [CCGGCAACACGCATCCAGTCCCGTGTTGTGTGCGTCGTTGGAAGAGGAACAGGAAATCGAAAACAACCAAAAACAACACACACACAGAGTGCAATTGCAAGGCGAGGATCAGATAACAAAAACAGGTATAGTTTGTCGTTGAAGCTGGTACCCCCATTTGCGGACTTGCAGACTTCAGGTTGTAGAATGTTGTAGCCAGGAATGAGTGCAGAAAACCTGAAACGAAAAGGGAAAGTGATCGCACAGAAACCGGGAGTGATCCCGTGGTCGTGAGGCGGCGAGAAGATCAGCACGATCGCACGATCGAGTTTTGCAAACGGAAAACGGAGTGAAAGTGCCCGAGAGTGTGCTTGTGTGTGTGTGTGCATCGGTCGTTGCTTGGTGCCAGTTGTGATTTGAAGCTGTTTTGCCCTTATGTTTAGTGATTTAGTTGCTCCTTTAATTCTGGTTGTGACTCGTACTGTGGAAGTGTACTTTTAAGTTGAACTTTTCCTTTTATTTGTGACCATATTCTTATCGTGTCTGCTCGTTATGTTTTCCAGTTGAATAAGATACACCAGCAAAACCACTCAAATAAACACACACTCTCCAAAATGAACCCCGGTGGTA]


>consensus_145#1 CCGGCAACACGCATCCAGTCCCGTGTTGTGTGCGTCGTTGGAAGAGGAACAGGAAATCGA AAACAACCAAAAACAACACACACACAGAGTGCAATTGCAAGGCGAGGATCAGATAACAAA AACAGGTATAGTTTGTCGTTGAAGCTGGTACCCCCATTTGCGGACTTGCAGACTTCAGGT TGTAGAATGTTGTAGCCAGGAATGAGTGCAGAAAACCTGAAACGAAAAGGGAAAGTGATC GCACAGAAACCGGGAGTGATCCCGTGGTCGTGAGGCGGCGAGAAGATCAGCACGATCGCA CGATCGAGTTTTGCAAACGGAAAACGGAGTGAAAGTGCCCGAGAGTGTGCTTGTGTGTGT GTGTGCATCGGTCGTTGCTTGGTGCCAGTTGTGATTTGAAGCTGTTTTGCCCTTATGTTT AGTGATTTAGTTGCTCCTTTAATTCTGGTTGTGACTCGTACTGTGGAAGTGTACTTTTAA GTTGAACTTTTCCTTTTATTTGTGACCATATTCTTATCGTGTCTGCTCGTTATGTTTTCC AGTTGAATAAGATACACCAGCAAAACCACTCAAATAAACACACACTCTCCAAAATGAACC CCGGTGGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_145#0      GCAGATCCCCGCGGTTATGGATAAGGTCCACCAGAGCATGCTCCATATGGTGTNTCCCAC 60
consensus_145#1      -----------------CCGGCAACACGCATCCA-----GTCCCGTGTTGTGTGCGTCGT 38
                                        *  **    ** *       *  ** * * ****    *  

consensus_145#0      TGGAATCAGTTCCCGCCCATGAACCCGCTGTGGCACTACGATCCTAGGTTTTGCCATCTT 120
consensus_145#1      TGGAAGAGGAACAGGAAATCGAAAACAACCAAAAACAACACACACACAGAGTGCAAT-TG 97
                     *****   *  *  *     ***  *        ** **   *  *     *** ** * 

consensus_145#0      CATGCTACGGAATGATCTACGATGACCGGTAACGGTTGCGTGATGTACATCTTCACCAAC 180
consensus_145#1      CAAGGCGAGGATCAGATAACAAAAACAGGTATAGTTTGT--------CGTTGAAGCTGGT 149
                     ** *    ***       ** *  ** ****  * ***         * *     *    

consensus_145#0      ACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCGTACTCCGATTTC 240
consensus_145#1      ACC---CCCATTTGCGGACTTGCAGACTTCAGGTTGTAGAATGTTGTAGCCAGGAATGAG 206
                     ***    *  *  *    *   *  ****   * **   *** * *    *    **   

consensus_145#0      TTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACC 300
consensus_145#1      TGCAGAAAACCTGAAACGAAAAGG--GAAAGTGATCG--CACAGAAACCGGGAGTGATCC 262
                     * **  *        * *     *  **  ******     * *  **  *   **  **

consensus_145#0      TTTGGGCCGTTCGCGTGCGAGCTGTACGCCATGCTGG---GATCG--CTGTTCGGCTGTG 355
consensus_145#1      CGTGG-TCGTGAGGCGGCGAGAAGATCAGCACGATCGCACGATCGAGTTTTGCAAACGGA 321
                       ***  ***  *   *****  *  *  ** * * *   *****   * * *    *  

consensus_145#0      CCTCGATCTGGACCATGACGATTGATTGCCTTTGAACCGNTACAAGTCATCCGTGAAAGG 415
consensus_145#1      AAACGGAGTGAAAGTGCCCGAGAGTGTGCTTGTGTGTGTGTGTGCATCGGTCGTTGCTTG 381
                        **   ** *      ***  *  *** * **      *     **   ***     *

consensus_145#0      GTACTCGC-GCGGC---AAGCCGATTAGACAAC-CAACCGGTGGCCCTGNTAGCNGCATT 470
consensus_145#1      GTGCCAGTTGTGATTTGAAGCTGTTTTGCCCTTATGTTTAGTGATTTAGTTGCTCCTTTA 441
                     ** *  *  * *     **** * ** * *          ***     * *       * 

consensus_145#0      ACTAGGGCCGTGTAGGGTGTACGCGCTGTANCTNGGGACTCTAGGGCCCCGCCTGNNCAC 530
consensus_145#1      ATTCTGGTTGTG------ACTCGTACTGTGGAAGTGTACTTTTAAGTTGAACTTTTCCTT 495
                     * *  **  ***         **  ****      * *** *   *     * *   *  

consensus_145#0      AGACATGGGAACCGGATACGTTGCCCGGGCAGGGCAACCCATGAACACCGCACTTGAACG 590
consensus_145#1      TTATTTGTGA-CCATATTC-TTATCGTGTCTGCTCG--TTATGTTTTCC--AGTTGAATA 549
                       *  ** ** **  ** * **  *  * * *  *     ***    **  * *****  

consensus_145#0      GGGAAAGCGGAACTAACCTGAACCCCCAGAAACGCTGGGCTTGGNNAACNCNGCTCCGCT 650
consensus_145#1      AGATACACCAGCAAAACC---ACTCAAATAAACAC-ACACTCTCCAAAATGAACCCCGGT 605
                      *  *  *      ****   ** *  * **** *    **     **     * *** *

consensus_145#0      CACNACTCAATCCCATACCTAATTGCCCCANNCCTNTCACCGCTGTTACCTGGCGCNCTG 710
consensus_145#1      GGTA-------------------------------------------------------- 609
                                                                                 

consensus_145#0      GNCCGGGCTCGCATTCGGACCCCA 734
consensus_145#1      ------------------------
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)