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Anopheles gambiae
cluster # 1457 cluster # 1457       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1457#0 length = 683 sequences # 1  
consensus_1457#1 length = 499 sequences # 1  

consensusID : consensus_1457#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence
                              [CCGGTGCAAATCGGTCCTACAAAGGTGACCGTCGGGTCGATTCGGTGTGTGGTGTGTGGTCGTAGTTCCTAAGTGCCAAAAAACGACCAGCAAACAGCGAACACAGCGGAAACGAAAGAAGCGTCCGCGAATCGTCCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGCGCACCTTCCAGAATGACCGATCTCTCCCGGCACCACCATCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTCTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCTATGGAACGACACGCGAAAGTCAGTCGTACACTAACGACACCGCTGTTCGTACGCCAAACACGATACCGCAGTTCCATGCAAGACCGTCAGGGACAACGGG]

[+] EMBL BM610053             [CCGGTGCAAATCGGTCCTACAAAGGTGACCGTCGGGTCGATTCGGTGTGTGGTGTGTGGTCGTAGTTCCTAAGTGCCAAAAAACGACCAGCAAACAGCGAACACAGCGGAAACGAAAGAAGCGTCCGCGAATCGTCCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGCGCACCTTCCAGAATGACCGATCTCTCCCGGCACCACCATCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTCTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCTATGGAACGACACGCGAAAGTCAGTCGTACACTAACGACACCGCTGTTCGTACGCCAAACACGATACCGCAGTTCCATGCAAGACCGTCAGGGACAACGGG]


>consensus_1457#0 CCGGTGCAAATCGGTCCTACAAAGGTGACCGTCGGGTCGATTCGGTGTGTGGTGTGTGGT CGTAGTTCCTAAGTGCCAAAAAACGACCAGCAAACAGCGAACACAGCGGAAACGAAAGAA GCGTCCGCGAATCGTCCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACA ACCGTGCCAGTGAATTCCATCGTGTGCGCACCTTCCAGAATGACCGATCTCTCCCGGCAC CACCATCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCC GAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCAC AAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTCTGCGCGATGGACTCCGG GAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATT AACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTC GCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCTATGGAACGACACGCGAA AGTCAGTCGTACACTAACGACACCGCTGTTCGTACGCCAAACACGATACCGCAGTTCCAT GCAAGACCGTCAGGGACAACGGG



consensusID : consensus_1457#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGGCGGAAACGAAAGAAGCGTCCGCGAATCGTTCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGTGCACCTTCCAGAATGACTGATCTCTCCCGGCACCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTTTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCT]

[+] EMBL BM611507             [CCGCGGACGCGTGGGCGGACGCGTGGGGCGGAAACGAAAGAAGCGTCCGCGAATCGTTCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCCATCGTGTGTGCACCTTCCAGAATGACTGATCTCTCCCGGCACCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTTTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCT]


>consensus_1457#1 CCGCGGACGCGTGGGCGGACGCGTGGGGCGGAAACGAAAGAAGCGTCCGCGAATCGTTCG AAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACAACCGTGCCAGTGAATTCC ATCGTGTGTGCACCTTCCAGAATGACTGATCTCTCCCGGCACCACCATCATCAGGGCAAT GGGTTCGGGTCCGGCAGCAGTATACACGACTATCCCGAGCATCTGAATCCCTTCTACGAG GATGAAAATCACAAACGTCTTCGCTTTTTGGAGCACAAGCCGGCACCAAAATCCCAGCGC CGCGGTAGCTTGTCCAGTTTGCGCGATGGACTCCGGGAGCTATGGCAATTTTCATCGATT CGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATTAACAAAACGTCCGAAAGCCCTCCA CCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTCGCAAGTACCAGTGGTTACCGCAAC ACGGTGAACGCTCCCGGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1457#0      CCGGTGCAAATCGGTCCTACAAAGGTGACCGTCGGGTCGATTCGGTGTGTGGTGTGTGGT 60
consensus_1457#1      ------------------------------------------------------------
                                                                                  

consensus_1457#0      CGTAGTTCCTAAGTGCCAAAAAACGACCAGCAAACAGCGAACACAGCGGAAACGAAAGAA 120
consensus_1457#1      ---------------CCGCGGACGCGTGGGCGGAC---GCGTGGGGCGGAAACGAAAGAA 42
                                     **    *       **  **   *      ***************

consensus_1457#0      GCGTCCGCGAATCGTCCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACA 180
consensus_1457#1      GCGTCCGCGAATCGTTCGAAAAAAAGTGAAGTGCATGACATCACCAACCACATCCGAACA 102
                      *************** ********************************************

consensus_1457#0      ACCGTGCCAGTGAATTCCATCGTGTGCGCACCTTCCAGAATGACCGATCTCTCCCGGCAC 240
consensus_1457#1      ACCGTGCCAGTGAATTCCATCGTGTGTGCACCTTCCAGAATGACTGATCTCTCCCGGCAC 162
                      ************************** ***************** ***************

consensus_1457#0      CACCATCACCATCATCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCC 300
consensus_1457#1      CACCATCA------TCAGGGCAATGGGTTCGGGTCCGGCAGCAGTATACACGACTATCCC 216
                      ********      **********************************************

consensus_1457#0      GAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCAC 360
consensus_1457#1      GAGCATCTGAATCCCTTCTACGAGGATGAAAATCACAAACGTCTTCGCTTTTTGGAGCAC 276
                      ************************************************************

consensus_1457#0      AAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTCTGCGCGATGGACTCCGG 420
consensus_1457#1      AAGCCGGCACCAAAATCCCAGCGCCGCGGTAGCTTGTCCAGTTTGCGCGATGGACTCCGG 336
                      ****************************************** *****************

consensus_1457#0      GAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATT 480
consensus_1457#1      GAGCTATGGCAATTTTCATCGATTCGCTTTGGCAAAAAGCGCTCATCAACGCTGGGCATT 396
                      ************************************************************

consensus_1457#0      AACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTC 540
consensus_1457#1      AACAAAACGTCCGAAAGCCCTCCACCGCTGCGAAGGGATACGTACGAAGTCGACTCCTTC 456
                      ************************************************************

consensus_1457#0      GCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCTATGGAACGACACGCGAA 600
consensus_1457#1      GCAAGTACCAGTGGTTACCGCAACACGGTGAACGCTCCCGGCT----------------- 499
                      *******************************************                 

consensus_1457#0      AGTCAGTCGTACACTAACGACACCGCTGTTCGTACGCCAAACACGATACCGCAGTTCCAT 660
consensus_1457#1      ------------------------------------------------------------
                                                                                  

consensus_1457#0      GCAAGACCGTCAGGGACAACGGG 683
consensus_1457#1      -----------------------
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)