|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence
[GAATNGCCCCCNGTTTTTTTTTTTTTTTTCTGTCNGCTCCTTTCTTTCATTCTGTACTCCCTATAGATGACATGATTATCAATCGTTTATCTCATAGTTTGAGCTCATTTTTTAAAAAAAATTTGCATTCCATCCCATCTCTTCAACAAAGTAGCACCAAATTTCCACCCCTGCCGCAGCGCGTAGATAGTGAAAATTGAACCTGTTTTAACTCCGAAATAGTAGGATACAAAAATCCAGCAAACTCTATCAACAGAGCCCGTTCCTGTTTCACCTGTTGTGGCATCGCCTCTTGTTACGTTAGAAGTCAGTGGTATGGTAGCGCGAAACCCGTTAATGCAACTTTGGTACTTGAACCTACTAAACAGGCGTCCCGGTCNTTGACAACACGGTTATCCCTAACCCGAGAGCCGCATTTATTTAAGCTTAAGGAAGGCTTTATGGTACAACTCACATCCAATGGGTCTATAAACAATTTCTACGGCGGNAAAAACCAATTCCAATTAGGGGGAACACAGGAAACCAATCCATCNCAACCAATGGGCTAAACCGGNNACGGGGGAAAACCTCATGGGTTACCTTTCCCAAAATCATCTATTGGGACACGGCCCAAAGCAATGCGAGNACACTT]
[+] EMBL AL692305 [GAATNGCCCCCNGTTTTTTTTTTTTTTTTCTGTCNGCTCCTTTCTTTCATTCTGTACTCCCTATAGATGACATGATTATCAATCGTTTATCTCATAGTTTGAGCTCATTTTTTAAAAAAAATTTGCATTCCATCCCATCTCTTCAACAAAGTAGCACCAAATTTCCACCCCTGCCGCAGCGCGTAGATAGTGAAAATTGAACCTGTTTTAACTCCGAAATAGTAGGATACAAAAATCCAGCAAACTCTATCAACAGAGCCCGTTCCTGTTTCACCTGTTGTGGCATCGCCTCTTGTTACGTTAGAAGTCAGTGGTATGGTAGCGCGAAACCCGTTAATGCAACTTTGGTACTTGAACCTACTAAACAGGCGTCCCGGTCNTTGACAACACGGTTATCCCTAACCCGAGAGCCGCATTTATTTAAGCTTAAGGAAGGCTTTATGGTACAACTCACATCCAATGGGTCTATAAACAATTTCTACGGCGGNAAAAACCAATTCCAATTAGGGGGAACACAGGAAACCAATCCATCNCAACCAATGGGCTAAACCGGNNACGGGGGAAAACCTCATGGGTTACCTTTCCCAAAATCATCTATTGGGACACGGCCCAAAGCAATGCGAGNACACTT]
consensusID : consensus_1460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[CCGGTCAGTGGTATGGTAGCGCGAAACCCGTTAATGCAACTTTGTACTTGAACCTACTAAACAGCGTCCCGTTTTGAAACACGTTTCCTACCGAGAGCGCATTATTTATTAGGAGCTTTGTAAACTCACTCATGTTTAACATTTAGGAACATCATGGAAGACACACACAGCACGAGGAACTTGTCTCAATTTGAGCAGAGAAATGAAGTCAAAGTGAAGATAGTAGAATAGTAGTGGCGGGGGGCGAGATGGCTGTAAGATATCAATTAGAAATGCATTGCGTTCGTTTGCTCAGATATTTCTTGTCCATTTCTAATACCCAACCAGCGCCACCAGTGGGCGTACATGTGTGTGTGTGTATGTCGGGTTGCATAGACATTTGCTCAAAACTATAGTATTGTAGTGGAATTCTGACCCAACCCAAGGTTTCCAGTTGTGTCACCCAGTGTCACCAGAAGCCCCCAAACAAGGTCCACACAACTTCCGGTGTATACTATTCCTTCCCAAACGATAGTCTCCTCCTGCGAGGAGGGGAAAAAACACAACAACAGTACAGGGGGTTTCCAGGTGTGTTCTCATAGTTGTGGGACACTTCCTTGACTCTTTCT]
[+] EMBL BM617122 [CCGGTCAGTGGTATGGTAGCGCGAAACCCGTTAATGCAACTTTGTACTTGAACCTACTAAACAGCGTCCCGTTTTGAAACACGTTTCCTACCGAGAGCGCATTATTTATTAGGAGCTTTGTAAACTCACTCATGTTTAACATTTAGGAACATCATGGAAGACACACACAGCACGAGGAACTTGTCTCAATTTGAGCAGAGAAATGAAGTCAAAGTGAAGATAGTAGAATAGTAGTGGCGGGGGGCGAGATGGCTGTAAGATATCAATTAGAAATGCATTGCGTTCGTTTGCTCAGATATTTCTTGTCCATTTCTAATACCCAACCAGCGCCACCAGTGGGCGTACATGTGTGTGTGTGTATGTCGGGTTGCATAGACATTTGCTCAAAACTATAGTATTGTAGTGGAATTCTGACCCAACCCAAGGTTTCCAGTTGTGTCACCCAGTGTCACCAGAAGCCCCCAAACAAGGTCCACACAACTTCCGGTGTATACTATTCCTTCCCAAACGATAGTCTCCTCCTGCGAGGAGGGGAAAAAACACAACAACAGTACAGGGGGTTTCCAGGTGTGTTCTCATAGTTGTGGGACACTTCCTTGACTCTTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1460#0 GAATNGCCCCCNGTTTTTTTTTTTTTTTTCTGTCNGCTCCTTTCTTTCATTCTGTACTC- 59
consensus_1460#1 ---------CCGGTCAGTGGTATGGTAGCGCGA-AACCCGTTAATGCAACTTTGTACTTG 50
** ** * * * * * * * ** * * * ******
consensus_1460#0 --CCTA-TAGATGACATGATTATCAATCGTTTATCTCATAGTTTGAGCTCATTTTTTAAA 116
consensus_1460#1 AACCTACTAAACAGCGTCCCGTTTTGAAACACGTTTCCTACCGAGAGCGCATTATTTATT 110
**** ** * * * * * ** ** **** **** ****
consensus_1460#0 AAAAA-TTTGCATTCCATCCCATCTCTTCAACAAAGTAGCACCAAATTTCCACCCCTGCC 175
consensus_1460#1 AGGAGCTTTGTAAACTCACTCATGTTTAACATTTAGGAACATCA---------------T 155
* * **** * * * *** * * * ** * ** **
consensus_1460#0 GCAGCGCGTAGATAGTGAAAATTGAACCTGTTTTAACTCCGAAATAGTAGGATACAAAAA 235
consensus_1460#1 GGAAGACACACACAGCACGAG--GAACTTGTCTCAATTTGAGCAGAGAAATGAAGTCAAA 213
* * * * * ** * **** *** * ** * * ** * * ***
consensus_1460#0 TCCAGCAAACTCTATCAACAGAGCCCGTTCCTGTTTCACCTGTTGTGGCATCGCCTCTTG 295
consensus_1460#1 GTGAAGATAGTAGAATAGTAGTGGCGGGGGGCGAGATGGCTGTAA-GATATCAATTAGAA 272
* * * * * * ** * * * * **** * *** *
consensus_1460#0 TTACGTTAGAAGTCAGTGGTATGGTAGCGCGAAACCCGTTAATGCAACTTTGGTACTTGA 355
consensus_1460#1 ATGCATTGC---------GTTCGTTTGCTCAGATATTTCTTGTCCATTTCTAATACCC-A 322
* * ** ** * * ** * * * * ** * * *** *
consensus_1460#0 ACCTACTAAACAGGCGTCCCGGTCNTTGACAACACGGTTATCCCTAACCCGAGAGCCGCA 415
consensus_1460#1 ACCAGCGCCACCAGTGGGC--GTACATGTGTGTGTGTGTATGTCGGGTTGCATAG--ACA 378
*** * ** * * * ** ** * *** * * ** **
consensus_1460#0 TTTATTTAAGCTTAAGGAAGGCTTTATGGTACAACTCACATCCAAT---GGGTCTATAAA 472
consensus_1460#1 TTTGCTCAAAACTATAGTA----TTGTAGTGGAATTCTGACCCAACCCAAGGTTTCCAGT 434
*** * ** ** * * ** * ** ** ** * **** *** * *
consensus_1460#0 CAATTTCTACGGCGGNAAAAACCAATTCCAATTAGGGGGAACACA---------GGAAAC 523
consensus_1460#1 TGTGTCACCCAGTGTCACCAGAAGCCCCCAAACAAGGTCCACACAACTTCCGGTGTATAC 494
* * * * * * **** * ** ***** * * **
consensus_1460#0 CAATCCATCNCAACCAATGGGCTAAACCGGNNACGGGGGAAAACCTCATGGGTTACCTTT 583
consensus_1460#1 TATTCCTTCCCAAACGATAGTCTCCTCCTGCGAGGAGGGGAAAAAACACAA-CAACAGTA 553
* *** ** *** * ** * ** ** * * * *** *** ** ** *
consensus_1460#0 CCCAAAATCATCTATTGGGA---CACGGCC-CAAAGCAATGCGAGNACACTT--- 631
consensus_1460#1 CAGGGGGTTTCCAGGTGTGTTCTCATAGTTGTGGGACACTTCCTTGACTCTTTCT 608
* * * ** * ** * ** * * ** ***
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||