These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [GCAGAATCCCCGCGTTTATCTCTATGTTGCTACTTATAAGATCTAACAATAAAGAAGCTTGTGAAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCTGTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAGAGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTTATAATCACAATACATCCGTTATTAGGGAACTAAATACAACAAGTGCGTAATAAAAAGGGGCACAAATGTGGTTTTCCCCTGGCCAATCCTTGGTTCGAAAGCCAAAGTCAGCAAAACCCACATTCTNTCTTATGTTCATCCCCCACGTTTTATCATTTTCCCCACCGGTTNTNCNAAAGGCCCAAAGCAAANGACGGTCTCCACAGTGGACTAACACACAACACACGAGCAGGACAAACCAAAGTTAATTGTGNTTGNATTCCTGGATAGNGCTACAACCATGCGGGTATTACACACAAATTAACCAGCACGAGACAACTTCAAATTTAAAGCTTNGGCTTCAAATTTGGACNCCACGGGTANCTTAAACCACAATTAAAGGTTTGGTCATAGCATANACATCAGGACANACCACAACAAAACACCTGGNAT] [+] EMBL AL692314 [GCAGAATCCCCGCGTTTATCTCTATGTTGCTACTTATAAGATCTAACAATAAAGAAGCTTGTGAAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCTGTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAGAGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTTATAATCACAATACATCCGTTATTAGGGAACTAAATACAACAAGTGCGTAATAAAAAGGGGCACAAATGTGGTTTTCCCCTGGCCAATCCTTGGTTCGAAAGCCAAAGTCAGCAAAACCCACATTCTNTCTTATGTTCATCCCCCACGTTTTATCATTTTCCCCACCGGTTNTNCNAAAGGCCCAAAGCAAANGACGGTCTCCACAGTGGACTAACACACAACACACGAGCAGGACAAACCAAAGTTAATTGTGNTTGNATTCCTGGATAGNGCTACAACCATGCGGGTATTACACACAAATTAACCAGCACGAGACAACTTCAAATTTAAAGCTTNGGCTTCAAATTTGGACNCCACGGGTANCTTAAACCACAATTAAAGGTTTGGTCATAGCATANACATCAGGACANACCACAACAAAACACCTGGNAT] consensusID : consensus_1463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [CCGCTGAAACATATTTTCCTATGGTAACTGTTTGTGTTTTGACCTGTACATCACGATTATTAATCATTTATAGCATTTAAATCTTTCTTCACTGTACCTCTCCACGACTTATATTACTTTTAGTCTTACTATTTTCCTCTATGTTGCTACTTATAAGATGTAACAATAAAGAAGCTTGTGAAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCTGTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAGAGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTTATAATCACAATACATCCTTTTTAGGGAATAATAAAAATGCTAATAAAAAGGGCAAATTTGTTTCCTTGCCATCTTGTTCGAACCAAATCACCAAACCACCCT] [+] EMBL BM618279 [CCGCTGAAACATATTTTCCTATGGTAACTGTTTGTGTTTTGACCTGTACATCACGATTATTAATCATTTATAGCATTTAAATCTTTCTTCACTGTACCTCTCCACGACTTATATTACTTTTAGTCTTACTATTTTCCTCTATGTTGCTACTTATAAGATGTAACAATAAAGAAGCTTGTGAAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCTGTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAGAGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTTATAATCACAATACATCCTTTTTAGGGAATAATAAAAATGCTAATAAAAAGGGCAAATTTGTTTCCTTGCCATCTTGTTCGAACCAAATCACCAAACCACCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1463#0 ------------------------------------------------------------ consensus_1463#1 CCGCTGAAACATATTTTCCTATGGTAACTGTTTGTGTTTTGACCTGTACATCACGATTAT 60 consensus_1463#0 ---------------------------------------------------------GCA 3 consensus_1463#1 TAATCATTTATAGCATTTAAATCTTTCTTCACTGTACCTCTCCACGACTTATATTACTTT 120 consensus_1463#0 GAATCCCCGCGTTTATCTCTATGTTGCTACTTATAAGATCTAACAATAAAGAAGCTTGTG 63 consensus_1463#1 TAGTCTTACTATTTTCCTCTATGTTGCTACTTATAAGATGTAACAATAAAGAAGCTTGTG 180 * ** *** *********************** ******************** consensus_1463#0 AAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCT 123 consensus_1463#1 AAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCT 240 ************************************************************ consensus_1463#0 GTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAG 183 consensus_1463#1 GTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAG 300 ************************************************************ consensus_1463#0 AGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTT 243 consensus_1463#1 AGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTT 360 ************************************************************ consensus_1463#0 ATAATCACAATACATCCGTTATTAGGGAACTAAATACAACAAGTGCGTAATAAAAAGGGG 303 consensus_1463#1 ATAATCACAATACATCC-TTTTTAGGGAA-----TAATAAAAATGC-TAATAAAAAGGG- 412 ***************** ** ******** ** * ** *** ************ consensus_1463#0 CACAAATGTGGTTTTCCCCTGGCCAATCCTTGGTTCGAAAGCCAAAGTCAGCAAAACCCA 363 consensus_1463#1 --CAAAT----TTGTTTCCTTGCCA---TCTTGTTCGAA---CCAAATCACCAAA--CCA 458 ***** ** * *** **** * ******* * ** *** **** *** consensus_1463#0 CATTCTNTCTTATGTTCATCCCCCACGTTTTATCATTTTCCCCACCGGTTNTNCNAAAGG 423 consensus_1463#1 CCCT-------------------------------------------------------- 462 * * consensus_1463#0 CCCAAAGCAAANGACGGTCTCCACAGTGGACTAACACACAACACACGAGCAGGACAAACC 483 consensus_1463#1 ------------------------------------------------------------ consensus_1463#0 AAAGTTAATTGTGNTTGNATTCCTGGATAGNGCTACAACCATGCGGGTATTACACACAAA 543 consensus_1463#1 ------------------------------------------------------------ consensus_1463#0 TTAACCAGCACGAGACAACTTCAAATTTAAAGCTTNGGCTTCAAATTTGGACNCCACGGG 603 consensus_1463#1 ------------------------------------------------------------ consensus_1463#0 TANCTTAAACCACAATTAAAGGTTTGGTCATAGCATANACATCAGGACANACCACAACAA 663 consensus_1463#1 ------------------------------------------------------------ consensus_1463#0 AACACCTGGNAT 675 consensus_1463#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||