These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CCGCCGAGAGAGAGCAGCAAGAAAAATGTGTGTGTGTGTGTAGTATGAAAATATAAGAATCTCAAATTCGGTGTAGCCTGTTTGCTGCCATAATTTGCTCCATTTTCAATGCAACGCCGACGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGATTCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGATCGTGGATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTGTGCGTGTCTGTTTGCTCAAGAATGTTAATTAGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGCTGAATACGCAAGAAGTTTTATCGAATTATAATAATTAGTGGTTTGATCGCACCGCCGCGACCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTCCCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCTGTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCCCATCGTGTCGTCTTCGAATGGACGGGTACAATGC] [+] EMBL BM630551 [CCGCCGAGAGAGAGCAGCAAGAAAAATGTGTGTGTGTGTGTAGTATGAAAATATAAGAATCTCAAATTCGGTGTAGCCTGTTTGCTGCCATAATTTGCTCCATTTTCAATGCAACGCCGACGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGATTCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGATCGTGGATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTGTGCGTGTCTGTTTGCTCAAGAATGTTAATTAGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGCTGAATACGCAAGAAGTTTTATCGAATTATAATAATTAGTGGTTTGATCGCACCGCCGCGACCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTCCCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCTGTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCCCATCGTGTCGTCTTCGAATGGACGGGTACAATGC] consensusID : consensus_1466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CCGCGGACGCGTGGGGCCGACGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGATTCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGATCGTGCATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTGCGTGTCTGTTTGCTCAAGAATGTTAATTTGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGCTGAATACGCATGAAGTTTTATCGAATTATAATAATTAGTGATTTGATCGCACCGCCGCGACCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTCCCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCTGTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCCTAACGTGTCGTCTTCGAATGGACGGGTACAATGCTCAGTTTACATCAGTCACCACACCGTAGCAAATCCTCTTACCGGCGTGGTGTGGTAGTAGGTAGCGTACACG] [+] EMBL BM609967 [CCGCGGACGCGTGGGGCCGACGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGATTCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGATCGTGCATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTGCGTGTCTGTTTGCTCAAGAATGTTAATTTGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGCTGAATACGCATGAAGTTTTATCGAATTATAATAATTAGTGATTTGATCGCACCGCCGCGACCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTCCCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCTGTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCCTAACGTGTCGTCTTCGAATGGACGGGTACAATGCTCAGTTTACATCAGTCACCACACCGTAGCAAATCCTCTTACCGGCGTGGTGTGGTAGTAGGTAGCGTACACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1466#0 CCGCCGAGAGAGAGCAGCAAGAAAAATGTGTGTGTGTGTGTAGTATGAAAATATAAGAAT 60 consensus_1466#1 ------------------------------------------------------------ consensus_1466#0 CTCAAATTCGGTGTAGCCTGTTTGCTGCCATAATTTGCTCCATTTTCAATGCAACGCCGA 120 consensus_1466#1 ---------------------------------------CCGCGGACG-CGTGGGGCCGA 20 ** * * ***** consensus_1466#0 CGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGAT 180 consensus_1466#1 CGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGAT 80 ************************************************************ consensus_1466#0 TCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGA 240 consensus_1466#1 TCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGA 140 ************************************************************ consensus_1466#0 TCGTGGATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTGTGCGTGTCTGTTTGCT 300 consensus_1466#1 TCGTGCATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTG--CGTGTCTGTTTGCT 198 ***** ************************************** ************** consensus_1466#0 CAAGAATGTTAATTAGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGC 360 consensus_1466#1 CAAGAATGTTAATTTGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGC 258 ************** ********************************************* consensus_1466#0 TGAATACGCAAGAAGTTTTATCGAATTATAATAATTAGTGGTTTGATCGCACCGCCGCGA 420 consensus_1466#1 TGAATACGCATGAAGTTTTATCGAATTATAATAATTAGTGATTTGATCGCACCGCCGCGA 318 ********** ***************************** ******************* consensus_1466#0 CCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTC 480 consensus_1466#1 CCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTC 378 ************************************************************ consensus_1466#0 CCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCT 540 consensus_1466#1 CCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCT 438 ************************************************************ consensus_1466#0 GTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCC 600 consensus_1466#1 GTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCC 498 ************************************************************ consensus_1466#0 CATCGTGTCGTCTTCGAATGGACGGGTACAATGC-------------------------- 634 consensus_1466#1 TAACGTGTCGTCTTCGAATGGACGGGTACAATGCTCAGTTTACATCAGTCACCACACCGT 558 * ******************************* consensus_1466#0 ---------------------------------------------- consensus_1466#1 AGCAAATCCTCTTACCGGCGTGGTGTGGTAGTAGGTAGCGTACACG 604 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||