These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 960 fasta sequence [CAGAATCGGCACGAGGTATCAGCTAACATTGCCACAAAGCCGCCGATCGCCTCCTAATGAAATACGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACAATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCTTCGAGTAAGCAGGGAAGGGAACAAGAACCAAAACACGACACAACACGCGAATTGCCATCGGGGGAAAGCAGGAAAAATTTGGGTGCCGGTATTACATTATATTGTTTACTTATTGAAATTCCGAACACGTTCCGGTTAGAGTAAAACCAGGCCAGAAGTAACGGGCGGNCAAGTGGTTGGTGTTGCGGTGAGTTGCCAGGTTAGGGAACAAAATTACNGCCAAAGGCTTTANGAAAACCCAAANCCCATTACCCAGGAAAAGGGTTNAACAGGCCNACTATTACGTTTTTAGGAAACAAGGANAAAAAGGGAAAANACGGGCAACACACGGAANACAAGGGGGTTACAGGCAAGCGCAAGGAACGGGCGGNGCGGTTTACATAAAGTTGGTTGGGCAATTACCCAGGGTTGGGCCTGGANTTCCTTTGGAAAGGAACTTCCGGGCCTTAACCGAAAAAACAATTGGCGATACAAAACCGTTAATTAGGGTTTAGCTTGTTNCCAACCCGGGGGCCTTTAAGCAAAATTTAAAGCCCCCGTTGTACCCTTTAAGATCACCCGTTTCCGGACGAAACCGACNCGAAACGAGTCGTTCCCACCCAAGGAGCCAACGANGAAGGCAGGNCCTTAATATCACGNTGGATTTTATACCGGGATGGGTATCACAGTAATATGGGANGAAACAGTTGGNTTGGGACNGAGCTTGAAAGNGGNATAACCCAGGTTTTAACGGGGGGGTCATNGCTTAGAGCAGTTAAAGTCCGGGACGAACTTTTTGGT] [+] EMBL BX468670 [CAGAATCGGCACGAGGTATCAGCTAACATTGCCACAAAGCCGCCGATCGCCTCCTAATGAAATACGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACAATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCTTCGAGTAAGCAGGGAAGGGAACAAGAACCAAAACACGACACAACACGCGAATTGCCATCGGGGGAAAGCAGGAAAAATTTGGGTGCCGGTATTACATTATATTGTTTACTTATTGAAATTCCGAACACGTTCCGGTTAGAGTAAAACCAGGCCAGAAGTAACGGGCGGNCAAGTGGTTGGTGTTGCGGTGAGTTGCCAGGTTAGGGAACAAAATTACNGCCAAAGGCTTTANGAAAACCCAAANCCCATTACCCAGGAAAAGGGTTNAACAGGCCNACTATTACGTTTTTAGGAAACAAGGANAAAAAGGGAAAANACGGGCAACACACGGAANACAAGGGGGTTACAGGCAAGCGCAAGGAACGGGCGGNGCGGTTTACATAAAGTTGGTTGGGCAATTACCCAGGGTTGGGCCTGGANTTCCTTTGGAAAGGAACTTCCGGGCCTTAACCGAAAAAACAATTGGCGATACAAAACCGTTAATTAGGGTTTAGCTTGTTNCCAACCCGGGGGCCTTTAAGCAAAATTTAAAGCCCCCGTTGTACCCTTTAAGATCACCCGTTTCCGGACGAAACCGACNCGAAACGAGTCGTTCCCACCCAAGGAGCCAACGANGAAGGCAGGNCCTTAATATCACGNTGGATTTTATACCGGGATGGGTATCACAGTAATATGGGANGAAACAGTTGGNTTGGGACNGAGCTTGAAAGNGGNATAACCCAGGTTTTAACGGGGGGGTCATNGCTTAGAGCAGTTAAAGTCCGGGACGAACTTTTTGGT] consensusID : consensus_1468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACAATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCTTCGATAAGAGGAAGGAAAAGAACAAACACACACACACACGCAATGCATCGGGAAGCAGAAATTGGTGCGTATACATATACATTACTATAAATCCGACACGTCGTAGTAAACAGCAGAGTACGGCGCAGTGTGTGTGCGTGTGCAGTAGGACAAATACGCAAGCTTAGAAACCAACCATACCAGAAGGTAAAGCATATACTTTTAGAAAGAAAGAAAGAAAGAAAGGTAGAGAGAGGGGGTATAATGTGATCAGTGCTGATCTGAGATCGGCTACGAAAATGCAACAACTATAGTTACTTCACCGGCTAGCATACCTACTAACCTCGCACCCACGCTCCCAGGCAGAGAGCTATCGTGTTTCGTGTTCTTGGAGTGTGGGGTGAGGTACGTTAGGTTGTTATAACGAATTGGAGGCAGCAAACGACTAATAGAAGCGAACATTAGAAAGACACAAACAAACAAACAGACAAACAAACAAACAAGTTAATCACTAAGAGCGG] [+] EMBL BM609961 [CCGGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACAATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCTTCGATAAGAGGAAGGAAAAGAACAAACACACACACACACGCAATGCATCGGGAAGCAGAAATTGGTGCGTATACATATACATTACTATAAATCCGACACGTCGTAGTAAACAGCAGAGTACGGCGCAGTGTGTGTGCGTGTGCAGTAGGACAAATACGCAAGCTTAGAAACCAACCATACCAGAAGGTAAAGCATATACTTTTAGAAAGAAAGAAAGAAAGAAAGGTAGAGAGAGGGGGTATAATGTGATCAGTGCTGATCTGAGATCGGCTACGAAAATGCAACAACTATAGTTACTTCACCGGCTAGCATACCTACTAACCTCGCACCCACGCTCCCAGGCAGAGAGCTATCGTGTTTCGTGTTCTTGGAGTGTGGGGTGAGGTACGTTAGGTTGTTATAACGAATTGGAGGCAGCAAACGACTAATAGAAGCGAACATTAGAAAGACACAAACAAACAAACAGACAAACAAACAAACAAGTTAATCACTAAGAGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1468#0 CAGAATCGGCACGAGGTATCAGCTAACATTGCCACAAAGCCGCCGATCGCCTCCTAATGA 60 consensus_1468#1 ------------------------------------------------------------ consensus_1468#0 AATACGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACA 120 consensus_1468#1 --CCGGTCCAATTGCCGGGGTCTATCCGACGATGAATATGGTGATGCCGGCATCTCGACA 58 ******************************************************* consensus_1468#0 ATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCT 180 consensus_1468#1 ATTCACACCACGACCACAACACAGCAGCAGCTACAGCAATGCCAAGGTGAATAAATCGCT 118 ************************************************************ consensus_1468#0 TCGAGTAAGCAGGGAAGGGAACAAGAACCAAAACACGACACAACACGCGAATTGCCATCG 240 consensus_1468#1 TCGA-TAAG--AGGAAGGAA--AAGAAC--AAACAC-ACACA-CACACGCAATGC-ATCG 168 **** **** ****** * ****** ****** ***** *** ** * *** **** consensus_1468#0 GGGGAAAGCAGGAAAAATTTGGGTGCCGGTATTACATTATATTGTTTACTTATTGAAATT 300 consensus_1468#1 GG---AAGCAGAAA-----TTGGTGC--GTAT-ACAT-ATACA------TTACTATAAAT 210 ** ****** ** * ***** **** **** *** *** * ** * consensus_1468#0 CCGAACACGTTCCGGTTAGAGTAAAACCAGGCCAGAAGTAACGGGCGGNCAAGTGGTTGG 360 consensus_1468#1 CCGA-CACGTCGTAGTAA----ACAGCAGAGTACGGCGCAGTGTGTGTGCGTGTG----- 260 **** ***** ** * * * * * * * * * * * * *** consensus_1468#0 TGTTGCGGTGAGTTGCCAGGTTAGGGAACAAAATTACNGCCAAAGGCTTTANGAAAACCC 420 consensus_1468#1 CAGTAGGACAAATACGCAAGCTTAGAAACCAA-CCATACCAGAAGGTAAAGCATATACTT 319 * * * * ** * * * *** ** * * **** * ** consensus_1468#0 AAANCCCATTACCCAGGAAAAGGGTTNAACAGGCCNACTATTACGTTTTTAGGAAACAAG 480 consensus_1468#1 TTAGAAAGAAAGAAAGAAAGAAAGGTAGAGAGAGGGGGTATAATGTGATCAGTGC-TGAT 378 * * ** ** * * * * ** *** * ** * ** * consensus_1468#0 GANAAAAAGGGAAAANACGGGCAACACACGGAANACAAGGGGGTTACAGGCAAGCGCAAG 540 consensus_1468#1 CTGAGATCGGCTACGAAAATGCAACA-----ACTATAGTTACTTCACCGGCTAGCATAC- 432 * * ** * * ****** * * * * ** *** *** * consensus_1468#0 GAACGGGCGGNGCGGTTTACATAAAGTTGGTTGGGCAATTACCCAGGGTTGGGCCTGGAN 600 consensus_1468#1 ---CTACTAACCTCGCACCCACGCTCCCAGGCAGAGAGCTATCGTGTTTCGTGTTCTTGG 489 * * ** * * * ** * * * * * consensus_1468#0 TTCCTTTGGAAAGGAACTTCCGGGCCTTAACCGAAAAAACAATTGGCGATACAAAACCGT 660 consensus_1468#1 AGTGTGGGGTGAGGTACGTTAGGTTGTTAT------AACGAATTGGAGGCAGCAAACGAC 543 * ** *** ** * ** *** ** ****** * * **** consensus_1468#0 TAATTAGGGTTTAGCTTGTTNCCAACCCGGGGGCCTTTAAGCAAAATTTAAAGCCCCCGT 720 consensus_1468#1 TAATAGAAGC---GAACATTAGAAAGACACAAACAAACAAACAGACAAACAAACAAACAA 600 **** * * ** ** * * ** ** * ** * * consensus_1468#0 TGTACCCTTTAAGATCACCCGTTTCCGGACGAAACCGACNCGAAACGAGTCGTTCCCACC 780 consensus_1468#1 GTTAATCACTAAGAGCGG------------------------------------------ 618 ** * ***** * consensus_1468#0 CAAGGAGCCAACGANGAAGGCAGGNCCTTAATATCACGNTGGATTTTATACCGGGATGGG 840 consensus_1468#1 ------------------------------------------------------------ consensus_1468#0 TATCACAGTAATATGGGANGAAACAGTTGGNTTGGGACNGAGCTTGAAAGNGGNATAACC 900 consensus_1468#1 ------------------------------------------------------------ consensus_1468#0 CAGGTTTTAACGGGGGGGTCATNGCTTAGAGCAGTTAAAGTCCGGGACGAACTTTTTGGT 960 consensus_1468#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||