These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 884 fasta sequence [GATCCCCGCGGTTAAACACATTTTGAATTGAATCCCATACAAAGAGGATTCTTAATTTGTTTATTACGGTGCGCGTATGGTGCTAGCACCTGTCCGTCCAGAATCTAGTGGCTTGTATGGTTTGGAGTAGTATATCATGACGCCGATTGACCGGCAATGCCTTGGAATGGGCTCGGATCGGTAGGTTCATAGTTTGGTCGCAGTGCCTTCCGTGTATTTAGTCTCGTCACAGCGGTAGCCCGGAGCAACTAAGTCCAAGATAAACTCTTACCCGGGTGTGGACTGCTACGCTAAGTTCTTATTAATTATATNTTATTGGCGTANTAGCCAANGCGATCATAGTCAGGCTATNTCCAGGCACTTGNGTACCACGTAGACGGAGACTGGGTGGCTAATCCCTTGCTACGCACGGCGGTTCATACGCGATTCAGAAACCANGAAGGGCATGCAGNATGTGCGGAATGATGGCGGTGCCGCTGGCCCGCTCCTATCCAGTGTNGCAAATTGCATACAGCATACTAGTCTACTGCCCGGTGCCATACGCAGACANGCCAGGGGNAGGATGAACATCCACAGANNAAAACNANAAACACANAACATCTAGAACGACGCGCGCCGCAAAGCTATATTACCCTATTAACGAATAGAAGGGTACAAACTTTTATAAGGANCTTTAGNGGCAATNGGGACCGGTCAGGATNTANAACAAACGGTCCGTGCACNTTGGGNGAANANAACNCTTGNGCGTTTAACCCCAAATTTAAATACGAGCCTTAGCCAGAACATCCCCACCNTTATCGAGCACGATGGACGGTAAATTAACGCCACAAACGGCCCGNNGACACCGNTATCGCCTTCCCCNACAGTGGAGCANACTTGAATTN] [+] EMBL AL692340 [GATCCCCGCGGTTAAACACATTTTGAATTGAATCCCATACAAAGAGGATTCTTAATTTGTTTATTACGGTGCGCGTATGGTGCTAGCACCTGTCCGTCCAGAATCTAGTGGCTTGTATGGTTTGGAGTAGTATATCATGACGCCGATTGACCGGCAATGCCTTGGAATGGGCTCGGATCGGTAGGTTCATAGTTTGGTCGCAGTGCCTTCCGTGTATTTAGTCTCGTCACAGCGGTAGCCCGGAGCAACTAAGTCCAAGATAAACTCTTACCCGGGTGTGGACTGCTACGCTAAGTTCTTATTAATTATATNTTATTGGCGTANTAGCCAANGCGATCATAGTCAGGCTATNTCCAGGCACTTGNGTACCACGTAGACGGAGACTGGGTGGCTAATCCCTTGCTACGCACGGCGGTTCATACGCGATTCAGAAACCANGAAGGGCATGCAGNATGTGCGGAATGATGGCGGTGCCGCTGGCCCGCTCCTATCCAGTGTNGCAAATTGCATACAGCATACTAGTCTACTGCCCGGTGCCATACGCAGACANGCCAGGGGNAGGATGAACATCCACAGANNAAAACNANAAACACANAACATCTAGAACGACGCGCGCCGCAAAGCTATATTACCCTATTAACGAATAGAAGGGTACAAACTTTTATAAGGANCTTTAGNGGCAATNGGGACCGGTCAGGATNTANAACAAACGGTCCGTGCACNTTGGGNGAANANAACNCTTGNGCGTTTAACCCCAAATTTAAATACGAGCCTTAGCCAGAACATCCCCACCNTTATCGAGCACGATGGACGGTAAATTAACGCCACAAACGGCCCGNNGACACCGNTATCGCCTTCCCCNACAGTGGAGCANACTTGAATTN] consensusID : consensus_1472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [AAAGAGAATTCTGGATTTGTTTATTACGGTGCGCGTATGGTACTGCACCTGTCCGTCCAGAATCTAGCGGCTTGATGGCTTGGAGTCGTTATCATGATGCCGATTGACCGGCACTGCCTTGGAATGGGTTCGGATCGGTAGGTTCATGTTTTGGTCGATTGCATTCCGTTGATATGTCGCGCCACAGCGGGACACCCGGCAGTAACAAAGTCATGACAAACTTTTCCCCGGGTGTGGACAGCTATGCTAAGTTTTTCTTCTTCTTATTATTATTATTGGCATAATAGCAAACCCGATCATGCCGGCCTTTTCAGGACTTGAGTACCACGTAGCCGGATAGTCAGCCCTTGCTACGGCGGAGGTTCATACGCGGTTAGAACCCACGACGGGCATGCTGTTAAGATGTGCGGAATGATGCGGCGGATCCCGCGACAAGGGCCCCCGGAAAGATGGTCGTTGGGGCCCCGTGGCGGGAGAACCATTTGCCTCTAACCGCCTAGGGCCCCCGATTCCTCTATTCCACTACCAAGAACACGTTCCTTTCTTTGACCGATGGATCATAACATTCCGGAAGAAAACACATTTGGTGACAGTTTTGCACA] [-] EMBL BX626858 [AAAGAGAATTCTGGATTTGTTTATTACGGTGCGCGTATGGTACTGCACCTGTCCGTCCAGAATCTAGCGGCTTGATGGCTTGGAGTCGTTATCATGATGCCGATTGACCGGCACTGCCTTGGAATGGGTTCGGATCGGTAGGTTCATGTTTTGGTCGATTGCATTCCGTTGATATGTCGCGCCACAGCGGGACACCCGGCAGTAACAAAGTCATGACAAACTTTTCCCCGGGTGTGGACAGCTATGCTAAGTTTTTCTTCTTCTTATTATTATTATTGGCATAATAGCAAACCCGATCATGCCGGCCTTTTCAGGACTTGAGTACCACGTAGCCGGATAGTCAGCCCTTGCTACGGCGGAGGTTCATACGCGGTTAGAACCCACGACGGGCATGCTGTTAAGATGTGCGGAATGATGCGGCGGATCCCGCGACAAGGGCCCCCGGAAAGATGGTCGTTGGGGCCCCGTGGCGGGAGAACCATTTGCCTCTAACCGCCTAGGGCCCCCGATTCCTCTATTCCACTACCAAGAACACGTTCCTTTCTTTGACCGATGGATCATAACATTCCGGAAGAAAACACATTTGGTGACAGTTTTGCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1472#0 GATCCCCGCGGTTAAACACATTTTGAATTGAATCCCATACAAAGAGGATTCTTAATTTGT 60 consensus_1472#1 ----------------------------------------AAAGAGAATTCTGGATTTGT 20 ****** ***** ****** consensus_1472#0 TTATTACGGTGCGCGTATGGTGCTAGCACCTGTCCGTCCAGAATCTAGTGGCTTGTATGG 120 consensus_1472#1 TTATTACGGTGCGCGTATGGTACT-GCACCTGTCCGTCCAGAATCTAGCGGCTTG-ATGG 78 ********************* ** *********************** ****** **** consensus_1472#0 TTTGGAGTAGTATATCATGACGCCGATTGACCGGCAATGCCTTGGAATGGGCTCGGATCG 180 consensus_1472#1 CTTGGAGTCGT-TATCATGATGCCGATTGACCGGCACTGCCTTGGAATGGGTTCGGATCG 137 ******* ** ******** *************** ************** ******** consensus_1472#0 GTAGGTTCATAGTTTGGTCGCAGTGCCTTCCGTGTATTTAGTCTCGTCACAGCGGTA-GC 239 consensus_1472#1 GTAGGTTCATGTTTTGGTCG-ATTGCATTCCGTTGATAT-GTCGCGCCACAGCGGGACAC 195 ********** ******** * *** ****** ** * *** ** ******** * * consensus_1472#0 CCGG-AGCAACTAAGTCCAAGATAAACTCTTACCCGGGTGTGGACTGCTACGCTAAGTTC 298 consensus_1472#1 CCGGCAGTAACAAAGTC-ATGACAAACTTTTCCCCGGGTGTGGACAGCTATGCTAAGTTT 254 **** ** *** ***** * ** ***** ** ************* **** ******** consensus_1472#0 TTATTAATTATATN----TTATTGGCGTANTAGCCAANGCGATCATAGTCAGGCTATNTC 354 consensus_1472#1 TTCTTCTTCTTATTATTATTATTGGCATAATAGCAAACCCGATCATG--CCGGCC-TTTT 311 ** ** * *** ******** ** **** ** ******* * *** * * consensus_1472#0 CAGGCACTTGNGTACCACGTAGACGGAGACTGGGTGGCTAATCCCTTGCTACGCACGGCG 414 consensus_1472#1 CAGG-ACTTGAGTACCACGTAGCCGGATAGTCAG--------CCCTTGCTACG-GCGGAG 361 **** ***** *********** **** * * * *********** *** * consensus_1472#0 GTTCATACGCGATTCAGAAACCANGAAGGGCATGC----AGNATGTGCGGAATGATG--G 468 consensus_1472#1 GTTCATACGCGGTT-AGAACCCACGACGGGCATGCTGTTAAGATGTGCGGAATGATGCGG 420 *********** ** **** *** ** ******** * *************** * consensus_1472#0 CGGTGCCGCTGGCCCGCTCCTATCCAGTGTNGCAAATTGCATACAGCATACTAGTCTACT 528 consensus_1472#1 CGGATCCCGCGACAAGGGCCCCCGGAAAGATGGTCGTTGGGGCCCCGTGGCGGGAGAACC 480 *** ** * * * ** * * * *** * * * ** consensus_1472#0 GCCCGGTGCCATACGCAGACANGCCAGGGGNAGGATGAACATCCACAGANNAAAACNANA 588 consensus_1472#1 ATTTGCCTCTAACCGC-------CTAGGGCCC---CCGATTCCTCTATTCCACTACCAAG 530 * * * *** * **** * * * * ** * consensus_1472#0 AACACANAACATCTAGAACGACGCGCGCCGCAAAGCTATATTACCCTATTAACGAATAGA 648 consensus_1472#1 AACACGTTCCTTT--------CTTTGACCGATGGATCATAACATTCCGGAAGAAAACACA 582 ***** * * * *** *** * * * ** * * consensus_1472#0 AGGGTACAAACTTTTATAAGGANCTTTAGNGGCAATNGGGACCGGTCAGGATNTANAACA 708 consensus_1472#1 TTTGGTGACAGTTTTGCACA---------------------------------------- 602 * * * **** * consensus_1472#0 AACGGTCCGTGCACNTTGGGNGAANANAACNCTTGNGCGTTTAACCCCAAATTTAAATAC 768 consensus_1472#1 ------------------------------------------------------------ consensus_1472#0 GAGCCTTAGCCAGAACATCCCCACCNTTATCGAGCACGATGGACGGTAAATTAACGCCAC 828 consensus_1472#1 ------------------------------------------------------------ consensus_1472#0 AAACGGCCCGNNGACACCGNTATCGCCTTCCCCNACAGTGGAGCANACTTGAATTN 884 consensus_1472#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||