These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1489#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence [CGCCCGAGGTTNAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTGTTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATAGGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTAAAAGGCAAATGCAACTGTATTTGCTTGCCCCTCGTTCTCTGCTCTCTTTCTCTCTCTCACACACACTCTCTTCAGTTAATATATTGAATATGTATTAACCCTATGTAAACCCCGAAGCCTCAACATACTATGTTGANACTGTTCTGAAACACAGAACCTCCTAAAGGATAATGCGCCCATTTACAGTAATTAAGCACAAATTTTAACACAACACAAACACAAACACCACACAGTTGTTACATTTGAAGTCAAAGATAAAACAAAGGTACACGCTTAAATCAATTNTTAAGCACACTTGTACTGGTANNACTATTTCCTTTAACAATAAGAGGTACAAGCGGGCGCTAATGGGTCTCTTTTACCGACATTTTCTCATACCTACAATTAACCCGGGGAAGCCGGCCGCCGGTTANCACGGTCATTAAACANTTGGNANCCACACCAACATGCANTGGCACGCAACGCANCGCNAACTTTCACTCCTCTGGCGCACACGTCCCANATCCCTCGGGTAATAACCACCCAAACATTCAACCGCTTCCCAANAANCCAGCTGNTAGGCAGGGCAA] [+] EMBL AL692417 [CGCCCGAGGTTNAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTGTTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATAGGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTAAAAGGCAAATGCAACTGTATTTGCTTGCCCCTCGTTCTCTGCTCTCTTTCTCTCTCTCACACACACTCTCTTCAGTTAATATATTGAATATGTATTAACCCTATGTAAACCCCGAAGCCTCAACATACTATGTTGANACTGTTCTGAAACACAGAACCTCCTAAAGGATAATGCGCCCATTTACAGTAATTAAGCACAAATTTTAACACAACACAAACACAAACACCACACAGTTGTTACATTTGAAGTCAAAGATAAAACAAAGGTACACGCTTAAATCAATTNTTAAGCACACTTGTACTGGTANNACTATTTCCTTTAACAATAAGAGGTACAAGCGGGCGCTAATGGGTCTCTTTTACCGACATTTTCTCATACCTACAATTAACCCGGGGAAGCCGGCCGCCGGTTANCACGGTCATTAAACANTTGGNANCCACACCAACATGCANTGGCACGCAACGCANCGCNAACTTTCACTCCTCTGGCGCACACGTCCCANATCCCTCGGGTAATAACCACCCAAACATTCAACCGCTTCCCAANAANCCAGCTGNTAGGCAGGGCAA] consensusID : consensus_1489#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [GAACAATTTATGAGATTAAAGCGTTGTATGTACAAGATAGATATGTACCTTTTCCAACCATGAAGCACACCTACTGTATTTAACAACCTTCAGTTTAAACACATTCCTTCAGACAGAAGTCTTTGGTATTTTGCAACTGTATTCCTTATAACATATAACGTGTTTTTTGTTCTGTTTTGCAAAATATTATCACTTCAGAGCCAGAAGTAGTATATATGGGTATTATTTATATACCATCAACATTATAAAGATACTAACACAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTGTTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATGGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTAAAAGGCAAATGCAACTGTATTTTGCTTGCCCCTCGTGCTCTGCTCTCTTTCTCTCTCTCACACACACTCTCTTCAGNTATATATGAATATGTATTAACCTATGTAACCCCGAAGCTCAACATACTTTGTTGAAACTGTTCTGAAACAGAACCTCCTAAAGATATGCG] [+] EMBL BX626971 [GAACAATTTATGAGATTAAAGCGTTGTATGTACAAGATAGATATGTACCTTTTCCAACCATGAAGCACACCTACTGTATTTAACAACCTTCAGTTTAAACACATTCCTTCAGACAGAAGTCTTTGGTATTTTGCAACTGTATTCCTTATAACATATAACGTGTTTTTTGTTCTGTTTTGCAAAATATTATCACTTCAGAGCCAGAAGTAGTATATATGGGTATTATTTATATACCATCAACATTATAAAGATACTAACACAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTGTTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATGGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTAAAAGGCAAATGCAACTGTATTTTGCTTGCCCCTCGTGCTCTGCTCTCTTTCTCTCTCTCACACACACTCTCTTCAGNTATATATGAATATGTATTAACCTATGTAACCCCGAAGCTCAACATACTTTGTTGAAACTGTTCTGAAACAGAACCTCCTAAAGATATGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1489#0 ------------------------------------------------------------ consensus_1489#1 GAACAATTTATGAGATTAAAGCGTTGTATGTACAAGATAGATATGTACCTTTTCCAACCA 60 consensus_1489#0 ------------------------------------------------------------ consensus_1489#1 TGAAGCACACCTACTGTATTTAACAACCTTCAGTTTAAACACATTCCTTCAGACAGAAGT 120 consensus_1489#0 ------------------------------------------------------------ consensus_1489#1 CTTTGGTATTTTGCAACTGTATTCCTTATAACATATAACGTGTTTTTTGTTCTGTTTTGC 180 consensus_1489#0 ------------------------------------------------------------ consensus_1489#1 AAAATATTATCACTTCAGAGCCAGAAGTAGTATATATGGGTATTATTTATATACCATCAA 240 consensus_1489#0 --------CGCCCGAGGTTNAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTG 52 consensus_1489#1 CATTATAAAGATACTAACACAGAACACAACTACACAACCATAAGGAATGTCTTGCCTTTG 300 * **************************************** consensus_1489#0 TTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAATA 112 consensus_1489#1 TTTTAACGTTATACTAATTACGTGTCGGGCTTCGAGACCTATTATAATCAGTTTTGAAT- 359 *********************************************************** consensus_1489#0 GGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTA 172 consensus_1489#1 GGTTTATACTTTAGTTGTACGTACCGATTCGGTATTATCTTGCAAACGTCTCTCAGTGTA 419 ************************************************************ consensus_1489#0 AAAGGCAAATGCAACTGTATTT-GCTTGCCCCTCGTTCTCTGCTCTCTTTCTCTCTCTCA 231 consensus_1489#1 AAAGGCAAATGCAACTGTATTTTGCTTGCCCCTCGTGCTCTGCTCTCTTTCTCTCTCTCA 479 ********************** ************* *********************** consensus_1489#0 CACACACTCTCTTCAGTTAATATATTGAATATGTATTAACCCTATGTAAACCCCGAAGCC 291 consensus_1489#1 CACACACTCTCTTCAGNTA-TATAT-GAATATGTATTAACC-TATGTAA-CCCCGAAGC- 534 **************** ** ***** *************** ******* ********* consensus_1489#0 TCAACATACTATGTTGANACTGTTCTGAAACACAGAACCTCCTAAAGGATAATGCGCCCA 351 consensus_1489#1 TCAACATACTTTGTTGAAACTGTTCTGAAACA--GAACCTCCTAAAGAT--ATGCG---- 586 ********** ****** ************** ************* ***** consensus_1489#0 TTTACAGTAATTAAGCACAAATTTTAACACAACACAAACACAAACACCACACAGTTGTTA 411 consensus_1489#1 ------------------------------------------------------------ consensus_1489#0 CATTTGAAGTCAAAGATAAAACAAAGGTACACGCTTAAATCAATTNTTAAGCACACTTGT 471 consensus_1489#1 ------------------------------------------------------------ consensus_1489#0 ACTGGTANNACTATTTCCTTTAACAATAAGAGGTACAAGCGGGCGCTAATGGGTCTCTTT 531 consensus_1489#1 ------------------------------------------------------------ consensus_1489#0 TACCGACATTTTCTCATACCTACAATTAACCCGGGGAAGCCGGCCGCCGGTTANCACGGT 591 consensus_1489#1 ------------------------------------------------------------ consensus_1489#0 CATTAAACANTTGGNANCCACACCAACATGCANTGGCACGCAACGCANCGCNAACTTTCA 651 consensus_1489#1 ------------------------------------------------------------ consensus_1489#0 CTCCTCTGGCGCACACGTCCCANATCCCTCGGGTAATAACCACCCAAACATTCAACCGCT 711 consensus_1489#1 ------------------------------------------------------------ consensus_1489#0 TCCCAANAANCCAGCTGNTAGGCAGGGCAA 741 consensus_1489#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||