These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1115 fasta sequence [AAGAATCCCCCCGAGGTTATGGTACGGCGATTGAGCATTTGAGGTGTGTGAGAATTTCGTCAACAGTCAACCTATCGACTGGTGGGGCCCTACTAGACACACTGCTCTATATTCTCTCTTTTCTTCCGCAAATCCAACCGTAGAGAGGGATTTATTTTACGTTTTGGATTGTATATTGGTTTCCCCTATTTGTTTTGGTCAATAACCCGGAATTATGGGCAACTAAAAAACCCGGGGCCGGATTTGGTTTAATTTCCATTTAAAGGGGAAATTTTTTAACTTTTGGTTCTTTAAATTGGCGGTTATTGGTTTTAATTAAATTAAGGCCTTAATTATTGCAATTTAACAAATTGGTTTTCCCGGAAAAAGAAATTAATTATGTGGCTGGTTTTAAATTCCAATTAACCTTTTTGGCCTTTATCCTTGGCCTTAAACTTCAATTTTTTATAACCCAACCTTTCCAAGTTAACCAAGGTTGGTTGGAATTCTTCCTTCTTCCGGCCTTCCGGGGGGCCTATGGAATTACACAGGTTTCCAAAACTTAAACAAATTGGCCAAGGCCAGGCTATATATTCTGGCCAACAAGGGTTCCGTTAAATATACTCTCTCCGGTTGGCACACCACGCGGCAACAACTTCCCTTCTTGCTTTCCCCNCCCCCCCAAGACCCTTCTCTAACGCAAGGCTTAACTTACGGCTTAAAACCAAAGGGGGGGTTCCAAATTGGAACCTACTCTACCACAACCCCAAACACCTGGGGGCAGCGNACTTGAACAACCCCGCTCGGGGCAACTGGCCTTGNGGCTNGCCGGTCTGCCGGGCCCNAAGAGGTCTTAACACCTTGNAACANCGCTAAAAGCCCAAGAGAANGCCCCAACGCTTTCTGGGAACAGGCCTTTTACACAACTTACGGGCTCTGGCGGCCCAAGCCGGCATTGCTTTGCAACCTTGCCGGCGCGGCACCTTGGAACGCAAAACAACAGCCCNGACACACACAACCAGTTTTTCAACTTCCCATCTAACCCGCGGCANCACACCTCCCCGGCTAACGNNGANCTCTTCACACCTTNCTCCCTTCACACCCCCTGGGCGACCGCCAACACTTGNCCACACCAA] [+] EMBL AL692465 [AAGAATCCCCCCGAGGTTATGGTACGGCGATTGAGCATTTGAGGTGTGTGAGAATTTCGTCAACAGTCAACCTATCGACTGGTGGGGCCCTACTAGACACACTGCTCTATATTCTCTCTTTTCTTCCGCAAATCCAACCGTAGAGAGGGATTTATTTTACGTTTTGGATTGTATATTGGTTTCCCCTATTTGTTTTGGTCAATAACCCGGAATTATGGGCAACTAAAAAACCCGGGGCCGGATTTGGTTTAATTTCCATTTAAAGGGGAAATTTTTTAACTTTTGGTTCTTTAAATTGGCGGTTATTGGTTTTAATTAAATTAAGGCCTTAATTATTGCAATTTAACAAATTGGTTTTCCCGGAAAAAGAAATTAATTATGTGGCTGGTTTTAAATTCCAATTAACCTTTTTGGCCTTTATCCTTGGCCTTAAACTTCAATTTTTTATAACCCAACCTTTCCAAGTTAACCAAGGTTGGTTGGAATTCTTCCTTCTTCCGGCCTTCCGGGGGGCCTATGGAATTACACAGGTTTCCAAAACTTAAACAAATTGGCCAAGGCCAGGCTATATATTCTGGCCAACAAGGGTTCCGTTAAATATACTCTCTCCGGTTGGCACACCACGCGGCAACAACTTCCCTTCTTGCTTTCCCCNCCCCCCCAAGACCCTTCTCTAACGCAAGGCTTAACTTACGGCTTAAAACCAAAGGGGGGGTTCCAAATTGGAACCTACTCTACCACAACCCCAAACACCTGGGGGCAGCGNACTTGAACAACCCCGCTCGGGGCAACTGGCCTTGNGGCTNGCCGGTCTGCCGGGCCCNAAGAGGTCTTAACACCTTGNAACANCGCTAAAAGCCCAAGAGAANGCCCCAACGCTTTCTGGGAACAGGCCTTTTACACAACTTACGGGCTCTGGCGGCCCAAGCCGGCATTGCTTTGCAACCTTGCCGGCGCGGCACCTTGGAACGCAAAACAACAGCCCNGACACACACAACCAGTTTTTCAACTTCCCATCTAACCCGCGGCANCACACCTCCCCGGCTAACGNNGANCTCTTCACACCTTNCTCCCTTCACACCCCCTGGGCGACCGCCAACACTTGNCCACACCAA] consensusID : consensus_1496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [CCGGCAGCACTTAACTACACCGTATGTGTGTGAATTACGTCTTCCAAGAAAGGGATACTCGATACCGCGCACAGGCACCGTCCAGGCAACGTTGCTCAATCCGCTGGGAACTGTGGTGCGGATGTTTGTCGTGCCGTACGATTTTCGAGATATGCCAGCTATGTCCACTACCTTCATACGGCAGCGCATACTCGCCTGTGACGATAGCAGCCTCAAGCTGCTCGGCAAAAACATCGAACAGCTCAGCAATGCCGAGCAAATGAAGTTGCTGCGTTATGCGATCCATTTGCGGTTTCAAACATCGCGATCTGGAAAACTGTCGCTTCACACAGACATCCGGCTGCTGATTTCCCGCCGCACCGACTGTGATACGGCCGCTGCCCATGCGAAAAATTTACTCGAGTCCCCGAACGAACTGAAAGTGGTTACCATCGTACCGGATAATCCCAAGTTTAGTTTACGTATTGATAAGCAGCAGTAGTGTGGCTTTAACAAACTCTCCTCTATCCCATGCGTGGTACGGCGATTGAGCATTCGAGGTGTGTGAGAATTTCGTCAACAGTCAACCTATCGACTGGGGGGGGGGGCCCTACTAGACACACTGCTCTATATTCTCTCTTTTCTTCC] [+] EMBL BM575821 [CCGGCAGCACTTAACTACACCGTATGTGTGTGAATTACGTCTTCCAAGAAAGGGATACTCGATACCGCGCACAGGCACCGTCCAGGCAACGTTGCTCAATCCGCTGGGAACTGTGGTGCGGATGTTTGTCGTGCCGTACGATTTTCGAGATATGCCAGCTATGTCCACTACCTTCATACGGCAGCGCATACTCGCCTGTGACGATAGCAGCCTCAAGCTGCTCGGCAAAAACATCGAACAGCTCAGCAATGCCGAGCAAATGAAGTTGCTGCGTTATGCGATCCATTTGCGGTTTCAAACATCGCGATCTGGAAAACTGTCGCTTCACACAGACATCCGGCTGCTGATTTCCCGCCGCACCGACTGTGATACGGCCGCTGCCCATGCGAAAAATTTACTCGAGTCCCCGAACGAACTGAAAGTGGTTACCATCGTACCGGATAATCCCAAGTTTAGTTTACGTATTGATAAGCAGCAGTAGTGTGGCTTTAACAAACTCTCCTCTATCCCATGCGTGGTACGGCGATTGAGCATTCGAGGTGTGTGAGAATTTCGTCAACAGTCAACCTATCGACTGGGGGGGGGGGCCCTACTAGACACACTGCTCTATATTCTCTCTTTTCTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1496#0 AAGAATCCCCCCGAGGTTATGGTACGGCGATTGAGCATTTGAGGTGTGTGAGAATTTCGT 60 consensus_1496#1 ------------------------------------------------------------ consensus_1496#0 CAACAGTCAACCTATCGACTGGTGGGGCCCTACTAGACACACTGCTCTATATTCTCTCTT 120 consensus_1496#1 ------------------------------------------------------------ consensus_1496#0 TTCTTCCGCAAATCCAACCGTAGAGAGGGATTTATTTTACGTTTTGGATTGTATATTGGT 180 consensus_1496#1 ------------------------------------------------------------ consensus_1496#0 TTCCCCTATTTGTTTTGGTCAATAACCCGGAATTATGGGCAACTAAAAAACCCGGGGCCG 240 consensus_1496#1 ------------------------------------------------------------ consensus_1496#0 GATTTGGTTTAATTTCCATTTAAAGGGGAAATTTTTTAACTTTTGGTTCTTTAAATTGGC 300 consensus_1496#1 ------------------------------------------------------------ consensus_1496#0 GGTTATTGGTTTTAATTAAATTAAGGCCTTAATTATTGCAATTTAACAAATTGGTTTTCC 360 consensus_1496#1 ------------------------------------------------------------ consensus_1496#0 CGGAAAAAGAAATTAATTATGTGGCTGGTTTTAAATTCCAATTAACCTTTTTGGCCTTTA 420 consensus_1496#1 ------------------------------------------------------------ consensus_1496#0 TCCTTGGCCTTAAACTTCAATTTTTTATAACCCAACCTTTCCAAGTTAACCAAGGTTGGT 480 consensus_1496#1 -------------------------------CCGGCAGCACTTAACTACACCGTATGTGT 29 ** * * * ** * * ** consensus_1496#0 TGGAATTCTTCCTTCTTCCGGCCTTCCGGGGGGC-CTATGGAATTACACAGGTTTCCAAA 539 consensus_1496#1 GTGAATTACGTCTTCCAAGAAAGGGATACTCGATACCGCGCACAGGCACCGTCCAGGCAA 89 ***** **** * * * * *** * ** consensus_1496#0 ACTTAAACAAATTGGCCAAGGCCAGGCTATATATTCTGGCCAA--CAAGGGTTCCGTTAA 597 consensus_1496#1 CGTTGCTCAATCCGCTGGGAACTGTGGTGCGGATGTTTGTCGTGCCGTACGATTTTCGAG 149 ** *** * * * * ** * * * * * * * consensus_1496#0 ATATACTCTCTCCGGTTGGCACAC-CACGCGGCAACAACTTCCCTTCTTGCTTTCCCCNC 656 consensus_1496#1 ATATGCCAGCTATGTCCACTACCTTCATACGGCAGCG-CATACTCGCCTGTGACGATAGC 208 **** * ** * ** ** ***** * * * * * ** * consensus_1496#0 CCCCCCAAGACCCTTCTCTAACGCAAGGCTTAACTTA-CGGCTTAAAACCAAAGGGGGGG 715 consensus_1496#1 AGCCTCAAGCTGCTCGGCAAAAACATCGAACAGCTCAGCAATGCCGAGCAAATGAAGTTG 268 ** **** ** * ** ** * * ** * * * * ** * * * consensus_1496#0 TTCCAAATTGGAACCTACTCTACCACAACCCCAAACACCTGGGGGCAGCGNACTTGAACA 775 consensus_1496#1 CTGCGTTATGCGATCCATTT----GCGGTTTCAAACATCGCGATCTGGAAAACT---GTC 321 * * ** * * * * * ****** * * * *** consensus_1496#0 ACCCCGCTCGGGGCAACTGGCCTTGNGGCTNGCCGGTCTGCCGGGCCCNAAGAGGTCTTA 835 consensus_1496#1 GCTTCACACAGA-CATCCGGC-TGCTGATTTCCCGCCGCACCGACTGTGATACGGCCGCT 379 * * * * * ** * *** * * * *** *** * ** * consensus_1496#0 ACACCTTGNAACANC--GCTAAAAGCCCAAGAGAANGCCCCAACGCTTTCTGG-GAACAG 892 consensus_1496#1 GCCCATGCGAAAAATTTACTCGAGTCCCCGAACGAACTGAAAGTGGTTACCATCGTACCG 439 * * * ** * ** * *** * * * * ** * * ** * consensus_1496#0 GCCTTTTACACAACT--TACGGGCTCTGGCGGCCCAAGCCGGCATTGCTTTG-CAACCTT 949 consensus_1496#1 GATAATCCCAAGTTTAGTTTACGTATTGATAAGCAGCAGTAGTGTGGCTTTAACAAACTC 499 * * ** * * * ** * * * ***** *** ** consensus_1496#0 GCCGGCGCGGCAC-CTTGGAACGCAAAACAACAGCCCNGACACACACAACCAGTTTTTCA 1008 consensus_1496#1 TCCTCTATCCCATGCGTGGTACGGCGATTGAGCATTCG-AGGTGTGTGAGAATTTCGTCA 558 ** ** * *** *** * * * * * * ** *** consensus_1496#0 ACTTCCCATCTAACCCGCGGCANCACACCTCCCCGGCTAACGNNGANCTCTTCACACCTT 1068 consensus_1496#1 ACAGTCAACCTA-TCGACTGGGGGGGGGGGCCCTACTAGACACACTGCTCTATATTCTCT 617 ** * * *** * * * *** ** **** * * * consensus_1496#0 NCTCCCTTCACACCCCCTGGGCGACCGCCAACACTTGNCCACACCAA 1115 consensus_1496#1 CTTTTCTTCC------------------------------------- 627 * **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||