cluster # 150

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Anopheles gambiae
cluster # 150 cluster # 150 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_150#0 length = 705 sequences # 1

consensus_150#1 length = 645 sequences # 1

consensusID : consensus_150#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [CCGCGGACGCGTGGGTGCATTTCTCACCTGAAAAAAGTGTACGTGTGTGTGTGTTGCTGATAATAGCCCCACGGGTACATGGGCAACCGCGGATAAGGCACGGATATGCTCACGTCGAAAATTACAAAAATTGGCAAAGTGGTACTATGCGGCGGCAAGGGCGTTGGAAAGACGGCAATGCTGGAGCAGCTCATCTACGGCCACGTTACGATCGATTCGGAGCTGCACAGCACGATCGAAGACACGTACGTGGCCAGCGTGGACACTGGGAAGGGCAGTAGGGACATGCTGCGCATTTACGACACGGCCGGGCTGCAGGGGAATGTGCAGCTGCCCCGCCACTATCTCTTGTTTGCCGACGCGTTCGTGCTGGTGTACGATCCGAGCGATCCGGCCAGCCTGGATCTGCTGGCCGGTATTAAAAGTGATATCGACAAGTACAAGGATAAGAAGGAGATGATAATTATTGTGATAGCCAACATGCACTCACGGGCATCCGCGGTCGGCGGGCAACGGTGCGCCGACCGGTACCGTACCGCAATCCCCCAACGGGAACCAGTACCACAGCACCAGCAACGGTAGCCAAATCAGCAACAACGATCTAATTGAGTCCAATCTCAACCGCGCCAACAATTGGTGCGCCCGGGAGCGCATCAAGCACTACACGGTGAATGCGATGGAGCGGGCGTCGCTGTACGAACCGTT]

[+] EMBL BM590067             [CCGCGGACGCGTGGGTGCATTTCTCACCTGAAAAAAGTGTACGTGTGTGTGTGTTGCTGATAATAGCCCCACGGGTACATGGGCAACCGCGGATAAGGCACGGATATGCTCACGTCGAAAATTACAAAAATTGGCAAAGTGGTACTATGCGGCGGCAAGGGCGTTGGAAAGACGGCAATGCTGGAGCAGCTCATCTACGGCCACGTTACGATCGATTCGGAGCTGCACAGCACGATCGAAGACACGTACGTGGCCAGCGTGGACACTGGGAAGGGCAGTAGGGACATGCTGCGCATTTACGACACGGCCGGGCTGCAGGGGAATGTGCAGCTGCCCCGCCACTATCTCTTGTTTGCCGACGCGTTCGTGCTGGTGTACGATCCGAGCGATCCGGCCAGCCTGGATCTGCTGGCCGGTATTAAAAGTGATATCGACAAGTACAAGGATAAGAAGGAGATGATAATTATTGTGATAGCCAACATGCACTCACGGGCATCCGCGGTCGGCGGGCAACGGTGCGCCGACCGGTACCGTACCGCAATCCCCCAACGGGAACCAGTACCACAGCACCAGCAACGGTAGCCAAATCAGCAACAACGATCTAATTGAGTCCAATCTCAACCGCGCCAACAATTGGTGCGCCCGGGAGCGCATCAAGCACTACACGGTGAATGCGATGGAGCGGGCGTCGCTGTACGAACCGTT]




>consensus_150#0
CCGCGGACGCGTGGGTGCATTTCTCACCTGAAAAAAGTGTACGTGTGTGTGTGTTGCTGA
TAATAGCCCCACGGGTACATGGGCAACCGCGGATAAGGCACGGATATGCTCACGTCGAAA
ATTACAAAAATTGGCAAAGTGGTACTATGCGGCGGCAAGGGCGTTGGAAAGACGGCAATG
CTGGAGCAGCTCATCTACGGCCACGTTACGATCGATTCGGAGCTGCACAGCACGATCGAA
GACACGTACGTGGCCAGCGTGGACACTGGGAAGGGCAGTAGGGACATGCTGCGCATTTAC
GACACGGCCGGGCTGCAGGGGAATGTGCAGCTGCCCCGCCACTATCTCTTGTTTGCCGAC
GCGTTCGTGCTGGTGTACGATCCGAGCGATCCGGCCAGCCTGGATCTGCTGGCCGGTATT
AAAAGTGATATCGACAAGTACAAGGATAAGAAGGAGATGATAATTATTGTGATAGCCAAC
ATGCACTCACGGGCATCCGCGGTCGGCGGGCAACGGTGCGCCGACCGGTACCGTACCGCA
ATCCCCCAACGGGAACCAGTACCACAGCACCAGCAACGGTAGCCAAATCAGCAACAACGA
TCTAATTGAGTCCAATCTCAACCGCGCCAACAATTGGTGCGCCCGGGAGCGCATCAAGCA
CTACACGGTGAATGCGATGGAGCGGGCGTCGCTGTACGAACCGTT

consensusID : consensus_150#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence

                              [CCGGGCGTTGGAAAGACGGCAATGCTGGAGCAGCTCATCTACGGCCACGTTACGATCGATTCGGAGCTGCACAGCACGATCGAAGACACGTACGTGGCCAGCGTGGACACTGGGAAGGGCAGTAGGGACATGCTGCGCATTTACGACACGGCCGGGCTGCAGGGGAATGTGCAGCTGCCCCGCCACTATCTCTTGTTTGCCGACGCGTTCGTGCTGGTGTACGATCCGAGCGATCCGGCCAGCCTGGATCTGCTGGCCGGTATTAAAAGTGATATCGACAAGTACAAGGATAAGAAGGAGATGATAATTATTGTGATAGCCAACATGCACTCACGGCATCCGCGGTCGGCGGGCAACGGTGCGCCGACCGGTACCGTACCGCAATCCCCCACAGCAACAACGATCTAATTGAGTCCAATCTCAACCGCGCCAACAATTGGTGCGCCCGGGAGCGCATCAAGCACTACACGGTGAATGCGATGGAGCGGGCGTCGCTGTACGAACCGTTCATCCAGCTGGCGATACGCCTCTACCCGACGCAAACCAAAAGCTCCTTCCCCCAGCTTCGACAGCTCACGCAGAAAACGTCCAAAGTGGACAACAGCTAGTTGCAGCGCGCGATTGCAGCAGCAGCAGCAGCAGCAG]

[+] EMBL BM593541             [CCGGGCGTTGGAAAGACGGCAATGCTGGAGCAGCTCATCTACGGCCACGTTACGATCGATTCGGAGCTGCACAGCACGATCGAAGACACGTACGTGGCCAGCGTGGACACTGGGAAGGGCAGTAGGGACATGCTGCGCATTTACGACACGGCCGGGCTGCAGGGGAATGTGCAGCTGCCCCGCCACTATCTCTTGTTTGCCGACGCGTTCGTGCTGGTGTACGATCCGAGCGATCCGGCCAGCCTGGATCTGCTGGCCGGTATTAAAAGTGATATCGACAAGTACAAGGATAAGAAGGAGATGATAATTATTGTGATAGCCAACATGCACTCACGGCATCCGCGGTCGGCGGGCAACGGTGCGCCGACCGGTACCGTACCGCAATCCCCCACAGCAACAACGATCTAATTGAGTCCAATCTCAACCGCGCCAACAATTGGTGCGCCCGGGAGCGCATCAAGCACTACACGGTGAATGCGATGGAGCGGGCGTCGCTGTACGAACCGTTCATCCAGCTGGCGATACGCCTCTACCCGACGCAAACCAAAAGCTCCTTCCCCCAGCTTCGACAGCTCACGCAGAAAACGTCCAAAGTGGACAACAGCTAGTTGCAGCGCGCGATTGCAGCAGCAGCAGCAGCAGCAG]




>consensus_150#1
CCGGGCGTTGGAAAGACGGCAATGCTGGAGCAGCTCATCTACGGCCACGTTACGATCGAT
TCGGAGCTGCACAGCACGATCGAAGACACGTACGTGGCCAGCGTGGACACTGGGAAGGGC
AGTAGGGACATGCTGCGCATTTACGACACGGCCGGGCTGCAGGGGAATGTGCAGCTGCCC
CGCCACTATCTCTTGTTTGCCGACGCGTTCGTGCTGGTGTACGATCCGAGCGATCCGGCC
AGCCTGGATCTGCTGGCCGGTATTAAAAGTGATATCGACAAGTACAAGGATAAGAAGGAG
ATGATAATTATTGTGATAGCCAACATGCACTCACGGCATCCGCGGTCGGCGGGCAACGGT
GCGCCGACCGGTACCGTACCGCAATCCCCCACAGCAACAACGATCTAATTGAGTCCAATC
TCAACCGCGCCAACAATTGGTGCGCCCGGGAGCGCATCAAGCACTACACGGTGAATGCGA
TGGAGCGGGCGTCGCTGTACGAACCGTTCATCCAGCTGGCGATACGCCTCTACCCGACGC
AAACCAAAAGCTCCTTCCCCCAGCTTCGACAGCTCACGCAGAAAACGTCCAAAGTGGACA
ACAGCTAGTTGCAGCGCGCGATTGCAGCAGCAGCAGCAGCAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_150#0      CCGCGGACGCGTGGGTGCATTTCTCACCTGAAAAAAGTGTACGTGTGTGTGTGTTGCTGA 60
consensus_150#1      ------------------------------------------------------------
                                                                                 

consensus_150#0      TAATAGCCCCACGGGTACATGGGCAACCGCGGATAAGGCACGGATATGCTCACGTCGAAA 120
consensus_150#1      ------------------------------------------------------------
                                                                                 

consensus_150#0      ATTACAAAAATTGGCAAAGTGGTACTATGCGGCGGCAAGGGCGTTGGAAAGACGGCAATG 180
consensus_150#1      ------------------------------------CCGGGCGTTGGAAAGACGGCAATG 24
                                                           **********************

consensus_150#0      CTGGAGCAGCTCATCTACGGCCACGTTACGATCGATTCGGAGCTGCACAGCACGATCGAA 240
consensus_150#1      CTGGAGCAGCTCATCTACGGCCACGTTACGATCGATTCGGAGCTGCACAGCACGATCGAA 84
                     ************************************************************

consensus_150#0      GACACGTACGTGGCCAGCGTGGACACTGGGAAGGGCAGTAGGGACATGCTGCGCATTTAC 300
consensus_150#1      GACACGTACGTGGCCAGCGTGGACACTGGGAAGGGCAGTAGGGACATGCTGCGCATTTAC 144
                     ************************************************************

consensus_150#0      GACACGGCCGGGCTGCAGGGGAATGTGCAGCTGCCCCGCCACTATCTCTTGTTTGCCGAC 360
consensus_150#1      GACACGGCCGGGCTGCAGGGGAATGTGCAGCTGCCCCGCCACTATCTCTTGTTTGCCGAC 204
                     ************************************************************

consensus_150#0      GCGTTCGTGCTGGTGTACGATCCGAGCGATCCGGCCAGCCTGGATCTGCTGGCCGGTATT 420
consensus_150#1      GCGTTCGTGCTGGTGTACGATCCGAGCGATCCGGCCAGCCTGGATCTGCTGGCCGGTATT 264
                     ************************************************************

consensus_150#0      AAAAGTGATATCGACAAGTACAAGGATAAGAAGGAGATGATAATTATTGTGATAGCCAAC 480
consensus_150#1      AAAAGTGATATCGACAAGTACAAGGATAAGAAGGAGATGATAATTATTGTGATAGCCAAC 324
                     ************************************************************

consensus_150#0      ATGCACTCACGGGCATCCGCGGTCGGCGGGCAACGGTGCGCCGACCGGTACCGTACCGCA 540
consensus_150#1      ATGCACTCACGG-CATCCGCGGTCGGCGGGCAACGGTGCGCCGACCGGTACCGTACCGCA 383
                     ************ ***********************************************

consensus_150#0      ATCCCCCAACGGGAACCAGTACCACAGCACCAGCAACGGTAGCCAAATCAGCAACAACGA 600
consensus_150#1      ATCCCCCA----------------------------------------CAGCAACAACGA 403
                     ********                                        ************

consensus_150#0      TCTAATTGAGTCCAATCTCAACCGCGCCAACAATTGGTGCGCCCGGGAGCGCATCAAGCA 660
consensus_150#1      TCTAATTGAGTCCAATCTCAACCGCGCCAACAATTGGTGCGCCCGGGAGCGCATCAAGCA 463
                     ************************************************************

consensus_150#0      CTACACGGTGAATGCGATGGAGCGGGCGTCGCTGTACGAACCGTT--------------- 705
consensus_150#1      CTACACGGTGAATGCGATGGAGCGGGCGTCGCTGTACGAACCGTTCATCCAGCTGGCGAT 523
                     *********************************************               

consensus_150#0      ------------------------------------------------------------
consensus_150#1      ACGCCTCTACCCGACGCAAACCAAAAGCTCCTTCCCCCAGCTTCGACAGCTCACGCAGAA 583
                                                                                 

consensus_150#0      ------------------------------------------------------------
consensus_150#1      AACGTCCAAAGTGGACAACAGCTAGTTGCAGCGCGCGATTGCAGCAGCAGCAGCAGCAGC 643
                                                                                 

consensus_150#0      --
consensus_150#1      AG 645