These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 986 fasta sequence [CAGAATCCCCCGAGGTTAATAACACTTCACTTACACTCCAAAATATTAAACGCTAAAAATAATTAAACCGTCACGTAATGAAATAAAAAAAAAAACTATACAATAATATTTCAATCAAAACCCTAAACAATAGCTACATACACAGCAAATACACAGCGTAGCAATATAATCAACGCAACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAGCGAAAACAGGATGCGGTNTTACTTAAGCCGGCCGAAACAATACAAACGCGTACGACCAAGGANAGTGATGAGTGGAGGACNNCNCATGTAAGAAACNACACAGTACGATCTTACTCCGCTCTTATACCAGTATCTATTATNCAGACCTACTATACCCTACACCCTGAACAGNAAAAAACCAACNCCAACAGCCTNATAATCGGACTAGAAGTCAGGAGCAGAANANNNNTTGAAAANCANATGGTCAACTTAGGCTAANACAACCCATTCAAGCTGCAACCCGGCCACTCGGTANACTGGAACATACCTTCAACAAATGCACACAGAAGAAACCACACGCAGGGCTCACACACCNGAACACTCNAACACCACAACACACGNCACCAANNCAACACTACCTTCCGAACACANAGACGGGACTAACGNAGGTTAGTNGGTTAAGCACGGATATAGNNTTAATTACACCACAGTGGGGGCCCGTCACACNCTCGGGANCTCAGTCGGCAAANGANATCCCACNACCCACCAACCNGAAGACAANTTGCGAGCACATCAAAGTGACCACGCCGCCNGCNCGACANCCNGAACGCAACCCCGGGGTCAGGCANCCCGGCGCCAACGGGGGNGGAACAGCGCGGCTGGTNAGNNTACCGTTACCNCAACCAGGGGTGGTCGACACGTGGCAGATGGAAAGTGCGCACCCTGGNGCCCCANCCACCATGCACCAACGACACTGACNCCCACCTCGGCNGANTACGC] [+] EMBL AL692473 [CAGAATCCCCCGAGGTTAATAACACTTCACTTACACTCCAAAATATTAAACGCTAAAAATAATTAAACCGTCACGTAATGAAATAAAAAAAAAAACTATACAATAATATTTCAATCAAAACCCTAAACAATAGCTACATACACAGCAAATACACAGCGTAGCAATATAATCAACGCAACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAGCGAAAACAGGATGCGGTNTTACTTAAGCCGGCCGAAACAATACAAACGCGTACGACCAAGGANAGTGATGAGTGGAGGACNNCNCATGTAAGAAACNACACAGTACGATCTTACTCCGCTCTTATACCAGTATCTATTATNCAGACCTACTATACCCTACACCCTGAACAGNAAAAAACCAACNCCAACAGCCTNATAATCGGACTAGAAGTCAGGAGCAGAANANNNNTTGAAAANCANATGGTCAACTTAGGCTAANACAACCCATTCAAGCTGCAACCCGGCCACTCGGTANACTGGAACATACCTTCAACAAATGCACACAGAAGAAACCACACGCAGGGCTCACACACCNGAACACTCNAACACCACAACACACGNCACCAANNCAACACTACCTTCCGAACACANAGACGGGACTAACGNAGGTTAGTNGGTTAAGCACGGATATAGNNTTAATTACACCACAGTGGGGGCCCGTCACACNCTCGGGANCTCAGTCGGCAAANGANATCCCACNACCCACCAACCNGAAGACAANTTGCGAGCACATCAAAGTGACCACGCCGCCNGCNCGACANCCNGAACGCAACCCCGGGGTCAGGCANCCCGGCGCCAACGGGGGNGGAACAGCGCGGCTGGTNAGNNTACCGTTACCNCAACCAGGGGTGGTCGACACGTGGCAGATGGAAAGTGCGCACCCTGGNGCCCCANCCACCATGCACCAACGACACTGACNCCCACCTCGGCNGANTACGC] consensusID : consensus_1500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [CGAGGGGTTTTTAAGTTTAACCCAAGGCCAATTTGGAAAAAACCAAACAAGGCAAACCCAACAAAACCTCCGGTCCAATAACACTTCACTTACAATCAAAAATACCTTTTAAACGCTAAAAATAATTAAACCGTCACGTAACGAAACAAAAAAAAATCTATACAATAATATTTCAATCAAAACCCTAAACAATAGCTACATACACAGCGAATACACAGCGTAGCAATATAATCAACGCAACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAACGAAAACAGGATGCGGTTTACTTAAGCCGGCCGAAACAATACAAACGGCGTACGACAAGGAAAGTGATGAGTGGAGGAAAAAATGTAAGAAACACACAGTACGATCTACTCCGCTCTTTCCAGTTCTTTTTCAGACCCTTCCCTACCACTGAAAGAAAAACCAACCCAACACCTATAATCGGACTAAAGTCAGAGCAGAAAAATGAA] [+] EMBL AL932792 [CGAGGGGTTTTTAAGTTTAACCCAAGGCCAATTTGGAAAAAACCAAACAAGGCAAACCCAACAAAACCTCCGGTCCAATAACACTTCACTTACAATCAAAAATACCTTTTAAACGCTAAAAATAATTAAACCGTCACGTAACGAAACAAAAAAAAATCTATACAATAATATTTCAATCAAAACCCTAAACAATAGCTACATACACAGCGAATACACAGCGTAGCAATATAATCAACGCAACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAACGAAAACAGGATGCGGTTTACTTAAGCCGGCCGAAACAATACAAACGGCGTACGACAAGGAAAGTGATGAGTGGAGGAAAAAATGTAAGAAACACACAGTACGATCTACTCCGCTCTTTCCAGTTCTTTTTCAGACCCTTCCCTACCACTGAAAGAAAAACCAACCCAACACCTATAATCGGACTAAAGTCAGAGCAGAAAAATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1500#0 -----------------------------------------------------------C 1 consensus_1500#1 CGAGGGGTTTTTAAGTTTAACCCAAGGCCAATTTGGAAAAAACCAAACAAGGCAAACCCA 60 consensus_1500#0 AGAATCCCCCGAGGTTAATAACACTTCACTTACACTCCAAAATA----TTAAACGCTAAA 57 consensus_1500#1 ACAAAACCTCCGGTCCAATAACACTTCACTTACAATCAAAAATACCTTTTAAACGCTAAA 120 * ** ** * * ****************** ** ****** ************ consensus_1500#0 AATAATTAAACCGTCACGTAATGAAATAAAAAAAAAAACTATACAATAATATTTCAATCA 117 consensus_1500#1 AATAATTAAACCGTCACGTAACGAAACAAAAAAAAAT-CTATACAATAATATTTCAATCA 179 ********************* **** ********* ********************** consensus_1500#0 AAACCCTAAACAATAGCTACATACACAGCAAATACACAGCGTAGCAATATAATCAACGCA 177 consensus_1500#1 AAACCCTAAACAATAGCTACATACACAGCGAATACACAGCGTAGCAATATAATCAACGCA 239 ***************************** ****************************** consensus_1500#0 ACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAGCGAAAACAGG 237 consensus_1500#1 ACAACAAACAAACAAAGAAAACACATTTACTTTCATACTACGTAAGCGAACGAAAACAGG 299 ************************************************* ********** consensus_1500#0 ATGCGGTNTTACTTAAGCCGGCCGAAACAATACAAACG-CGTACGACCAAGGANAGTGAT 296 consensus_1500#1 ATGCGGTTT-ACTTAAGCCGGCCGAAACAATACAAACGGCGTACGAC-AAGGAAAGTGAT 357 ******* * **************************** ******** ***** ****** consensus_1500#0 GAGTGGAGGACNNCNCATGTAAGAAACNACACAGTACGATCTTACTCCGCTCTTATACCA 356 consensus_1500#1 GAGTGGAGG--AAAAAATGTAAGAAACA-CACAGTACGATCT-ACTCCGCTCTTT--CCA 411 ********* *********** ************* *********** *** consensus_1500#0 GTATCTATTATNCAGACCTACTATACCCTACACCCTGAACAGNAAAAAACCAACNCCAAC 416 consensus_1500#1 GT---TCTTTTTCAGACCC----TTCCCTAC-CACTGAA---AGAAAAACCAACCC-AAC 459 ** * ** * ****** * ****** * ***** ********** * *** consensus_1500#0 AGCCTNATAATCGGACTAGAAGTCAGGAGCAGAANANNNNTTGAAAANCANATGGTCAAC 476 consensus_1500#1 A--CCTATAATCGGACTA-AAGTCAG-AGCAGAAAAATGAA------------------- 496 * * ************ ******* ******* * consensus_1500#0 TTAGGCTAANACAACCCATTCAAGCTGCAACCCGGCCACTCGGTANACTGGAACATACCT 536 consensus_1500#1 ------------------------------------------------------------ consensus_1500#0 TCAACAAATGCACACAGAAGAAACCACACGCAGGGCTCACACACCNGAACACTCNAACAC 596 consensus_1500#1 ------------------------------------------------------------ consensus_1500#0 CACAACACACGNCACCAANNCAACACTACCTTCCGAACACANAGACGGGACTAACGNAGG 656 consensus_1500#1 ------------------------------------------------------------ consensus_1500#0 TTAGTNGGTTAAGCACGGATATAGNNTTAATTACACCACAGTGGGGGCCCGTCACACNCT 716 consensus_1500#1 ------------------------------------------------------------ consensus_1500#0 CGGGANCTCAGTCGGCAAANGANATCCCACNACCCACCAACCNGAAGACAANTTGCGAGC 776 consensus_1500#1 ------------------------------------------------------------ consensus_1500#0 ACATCAAAGTGACCACGCCGCCNGCNCGACANCCNGAACGCAACCCCGGGGTCAGGCANC 836 consensus_1500#1 ------------------------------------------------------------ consensus_1500#0 CCGGCGCCAACGGGGGNGGAACAGCGCGGCTGGTNAGNNTACCGTTACCNCAACCAGGGG 896 consensus_1500#1 ------------------------------------------------------------ consensus_1500#0 TGGTCGACACGTGGCAGATGGAAAGTGCGCACCCTGGNGCCCCANCCACCATGCACCAAC 956 consensus_1500#1 ------------------------------------------------------------ consensus_1500#0 GACACTGACNCCCACCTCGGCNGANTACGC 986 consensus_1500#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||