These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [CCGCTGCATCGTCGGCCCGAGCCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACTCACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACCTCCGCGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCTACAACATCCGGCCCGACCAGAGCAAACGGAAAGCTACCGGCTGGCCAGCGTTCGGTTTCCTCCCCACCGTCAGTGCGAAAACGAGCGCGACCGCGGGCAACCGGCAGCAGTACAACTTCATTGCGGACGCGGTGGAAATATCCGCGCCCGCCGTCGTGTTCATCGAGATCCGGGACCGGCAGCGTGTGGACTTTTTCACCCGCGAACCGGTGACGGTGTCGAACGGGTCCGGCTTCATCATCGACGCGGGACGGGCTGATCCTCACGAACGCGCAACGTGGTGGTGAGCAAACCGCACACGCTGGTCACGGTGC] [+] EMBL BM592572 [CCGCTGCATCGTCGGCCCGAGCCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACTCACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACCTCCGCGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCTACAACATCCGGCCCGACCAGAGCAAACGGAAAGCTACCGGCTGGCCAGCGTTCGGTTTCCTCCCCACCGTCAGTGCGAAAACGAGCGCGACCGCGGGCAACCGGCAGCAGTACAACTTCATTGCGGACGCGGTGGAAATATCCGCGCCCGCCGTCGTGTTCATCGAGATCCGGGACCGGCAGCGTGTGGACTTTTTCACCCGCGAACCGGTGACGGTGTCGAACGGGTCCGGCTTCATCATCGACGCGGGACGGGCTGATCCTCACGAACGCGCAACGTGGTGGTGAGCAAACCGCACACGCTGGTCACGGTGC] consensusID : consensus_1502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [AGATCGCCGAGGATCTGATGTTGGAGCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACACACACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACTCCGGGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCT] [+] EMBL AL933754 [AGATCGCCGAGGATCTGATGTTGGAGCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACACACACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACTCCGGGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1502#0 ---CCGCTGCATCGTCGGC-CCGAGCCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTAC 56 consensus_1502#1 AGATCGCCGAGGATCTGATGTTGGAGCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTAC 60 *** * * * ********************************** consensus_1502#0 GACAAACTCACACACACAC--CACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCT 114 consensus_1502#1 GACAAACACACACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCT 120 ******* *********** *************************************** consensus_1502#0 TCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACCTCCGCGCGTTCGG 174 consensus_1502#1 TCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAAC-TCCGGGCGTTCGG 179 ********************************************** **** ******** consensus_1502#0 TGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGC 234 consensus_1502#1 TGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGC 239 ************************************************************ consensus_1502#0 GCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCTA 294 consensus_1502#1 GCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCT- 298 *********************************************************** consensus_1502#0 CAACATCCGGCCCGACCAGAGCAAACGGAAAGCTACCGGCTGGCCAGCGTTCGGTTTCCT 354 consensus_1502#1 ------------------------------------------------------------ consensus_1502#0 CCCCACCGTCAGTGCGAAAACGAGCGCGACCGCGGGCAACCGGCAGCAGTACAACTTCAT 414 consensus_1502#1 ------------------------------------------------------------ consensus_1502#0 TGCGGACGCGGTGGAAATATCCGCGCCCGCCGTCGTGTTCATCGAGATCCGGGACCGGCA 474 consensus_1502#1 ------------------------------------------------------------ consensus_1502#0 GCGTGTGGACTTTTTCACCCGCGAACCGGTGACGGTGTCGAACGGGTCCGGCTTCATCAT 534 consensus_1502#1 ------------------------------------------------------------ consensus_1502#0 CGACGCGGGACGGGCTGATCCTCACGAACGCGCAACGTGGTGGTGAGCAAACCGCACACG 594 consensus_1502#1 ------------------------------------------------------------ consensus_1502#0 CTGGTCACGGTGC 607 consensus_1502#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||