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Anopheles gambiae
cluster # 1502 cluster # 1502       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1502#0 length = 607 sequences # 1  
consensus_1502#1 length = 298 sequences # 1  

consensusID : consensus_1502#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence
                              [CCGCTGCATCGTCGGCCCGAGCCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACTCACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACCTCCGCGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCTACAACATCCGGCCCGACCAGAGCAAACGGAAAGCTACCGGCTGGCCAGCGTTCGGTTTCCTCCCCACCGTCAGTGCGAAAACGAGCGCGACCGCGGGCAACCGGCAGCAGTACAACTTCATTGCGGACGCGGTGGAAATATCCGCGCCCGCCGTCGTGTTCATCGAGATCCGGGACCGGCAGCGTGTGGACTTTTTCACCCGCGAACCGGTGACGGTGTCGAACGGGTCCGGCTTCATCATCGACGCGGGACGGGCTGATCCTCACGAACGCGCAACGTGGTGGTGAGCAAACCGCACACGCTGGTCACGGTGC]

[+] EMBL BM592572             [CCGCTGCATCGTCGGCCCGAGCCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACTCACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACCTCCGCGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCTACAACATCCGGCCCGACCAGAGCAAACGGAAAGCTACCGGCTGGCCAGCGTTCGGTTTCCTCCCCACCGTCAGTGCGAAAACGAGCGCGACCGCGGGCAACCGGCAGCAGTACAACTTCATTGCGGACGCGGTGGAAATATCCGCGCCCGCCGTCGTGTTCATCGAGATCCGGGACCGGCAGCGTGTGGACTTTTTCACCCGCGAACCGGTGACGGTGTCGAACGGGTCCGGCTTCATCATCGACGCGGGACGGGCTGATCCTCACGAACGCGCAACGTGGTGGTGAGCAAACCGCACACGCTGGTCACGGTGC]


>consensus_1502#0 CCGCTGCATCGTCGGCCCGAGCCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACA AACTCACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCG CCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACCTCCGCGCGTTCGGTGGAAC GGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAA GGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCTACAACAT CCGGCCCGACCAGAGCAAACGGAAAGCTACCGGCTGGCCAGCGTTCGGTTTCCTCCCCAC CGTCAGTGCGAAAACGAGCGCGACCGCGGGCAACCGGCAGCAGTACAACTTCATTGCGGA CGCGGTGGAAATATCCGCGCCCGCCGTCGTGTTCATCGAGATCCGGGACCGGCAGCGTGT GGACTTTTTCACCCGCGAACCGGTGACGGTGTCGAACGGGTCCGGCTTCATCATCGACGC GGGACGGGCTGATCCTCACGAACGCGCAACGTGGTGGTGAGCAAACCGCACACGCTGGTC ACGGTGC



consensusID : consensus_1502#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence
                              [AGATCGCCGAGGATCTGATGTTGGAGCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACACACACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACTCCGGGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCT]

[+] EMBL AL933754             [AGATCGCCGAGGATCTGATGTTGGAGCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACACACACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACTCCGGGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCT]


>consensus_1502#1 AGATCGCCGAGGATCTGATGTTGGAGCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTAC GACAAACACACACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCT TCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACTCCGGGCGTTCGGT GGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCG CAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1502#0      ---CCGCTGCATCGTCGGC-CCGAGCCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTAC 56
consensus_1502#1      AGATCGCCGAGGATCTGATGTTGGAGCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTAC 60
                          *** *       *     *   **********************************

consensus_1502#0      GACAAACTCACACACACAC--CACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCT 114
consensus_1502#1      GACAAACACACACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCT 120
                      ******* ***********  ***************************************

consensus_1502#0      TCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACCTCCGCGCGTTCGG 174
consensus_1502#1      TCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAAC-TCCGGGCGTTCGG 179
                      ********************************************** **** ********

consensus_1502#0      TGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGC 234
consensus_1502#1      TGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGC 239
                      ************************************************************

consensus_1502#0      GCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCTA 294
consensus_1502#1      GCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCT- 298
                      *********************************************************** 

consensus_1502#0      CAACATCCGGCCCGACCAGAGCAAACGGAAAGCTACCGGCTGGCCAGCGTTCGGTTTCCT 354
consensus_1502#1      ------------------------------------------------------------
                                                                                  

consensus_1502#0      CCCCACCGTCAGTGCGAAAACGAGCGCGACCGCGGGCAACCGGCAGCAGTACAACTTCAT 414
consensus_1502#1      ------------------------------------------------------------
                                                                                  

consensus_1502#0      TGCGGACGCGGTGGAAATATCCGCGCCCGCCGTCGTGTTCATCGAGATCCGGGACCGGCA 474
consensus_1502#1      ------------------------------------------------------------
                                                                                  

consensus_1502#0      GCGTGTGGACTTTTTCACCCGCGAACCGGTGACGGTGTCGAACGGGTCCGGCTTCATCAT 534
consensus_1502#1      ------------------------------------------------------------
                                                                                  

consensus_1502#0      CGACGCGGGACGGGCTGATCCTCACGAACGCGCAACGTGGTGGTGAGCAAACCGCACACG 594
consensus_1502#1      ------------------------------------------------------------
                                                                                  

consensus_1502#0      CTGGTCACGGTGC 607
consensus_1502#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)