cluster # 1504

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Anopheles gambiae
cluster # 1504 cluster # 1504 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1504#0 length = 703 sequences # 1

consensus_1504#1 length = 526 sequences # 1

consensusID : consensus_1504#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence

                              [CCGCCCACGCGTCCGTGCCAACGAAAAAAATAGATCGCCAAGAGTGGAAGTAGACTTGTGCAAAAGAGAATCGCTCTGCGTCGTGTTTCGCGTCCTTTACGGAATTTAGCCCGGCCCGGACTACCGGAAACCGAACTTCCACTCCAGTGCAGCAGTGCTGTGTTATCTAGGTCGGCTCGTAGCGCAAAAGGAAGTGTAGTCGATTGCATCCACAGGATTGTATCATGTTAGCGAAATCACACTAGGAAAAGTTGTGTTTCAACCCCCGAAACCGTGTACAGCCTCAACGAAAGCTAGCACAACCACCAACCACCGAGCATTAACGCTTCATTTGTCCTTCCACTGTGATTGTGGAGTCTCTGTGGTGCAAGCCGTGCACGAGAGGCATGCAAGACTAATACAGAGAGCAGAAGGAGTGCACACGTTGTGTCCTTGTGTGTGTGTGTGTGTGATAAAGACGGTTCCGAACCACCCTCCCCCCTCCGGGTGCTTTTTGTTGTTGTTGTTCACGCGTTAGCCCCAGCGCGCTGTGCTCTATCACCGTCGTACCACCGTAGCACCAGGTACGTGTACAGTAAGCGGCCGGGAGCTTGCCTTAACTGAATCCCGCAACCTGCAATCGCCGATTGGCCGATTGCCATCTGCTCCGTCAAGATACGATACAAACGAGGCATCATGTTTTGGGGACTCGCTCAGTATGCAG]

[+] EMBL BM589165             [CCGCCCACGCGTCCGTGCCAACGAAAAAAATAGATCGCCAAGAGTGGAAGTAGACTTGTGCAAAAGAGAATCGCTCTGCGTCGTGTTTCGCGTCCTTTACGGAATTTAGCCCGGCCCGGACTACCGGAAACCGAACTTCCACTCCAGTGCAGCAGTGCTGTGTTATCTAGGTCGGCTCGTAGCGCAAAAGGAAGTGTAGTCGATTGCATCCACAGGATTGTATCATGTTAGCGAAATCACACTAGGAAAAGTTGTGTTTCAACCCCCGAAACCGTGTACAGCCTCAACGAAAGCTAGCACAACCACCAACCACCGAGCATTAACGCTTCATTTGTCCTTCCACTGTGATTGTGGAGTCTCTGTGGTGCAAGCCGTGCACGAGAGGCATGCAAGACTAATACAGAGAGCAGAAGGAGTGCACACGTTGTGTCCTTGTGTGTGTGTGTGTGTGATAAAGACGGTTCCGAACCACCCTCCCCCCTCCGGGTGCTTTTTGTTGTTGTTGTTCACGCGTTAGCCCCAGCGCGCTGTGCTCTATCACCGTCGTACCACCGTAGCACCAGGTACGTGTACAGTAAGCGGCCGGGAGCTTGCCTTAACTGAATCCCGCAACCTGCAATCGCCGATTGGCCGATTGCCATCTGCTCCGTCAAGATACGATACAAACGAGGCATCATGTTTTGGGGACTCGCTCAGTATGCAG]




>consensus_1504#0
CCGCCCACGCGTCCGTGCCAACGAAAAAAATAGATCGCCAAGAGTGGAAGTAGACTTGTG
CAAAAGAGAATCGCTCTGCGTCGTGTTTCGCGTCCTTTACGGAATTTAGCCCGGCCCGGA
CTACCGGAAACCGAACTTCCACTCCAGTGCAGCAGTGCTGTGTTATCTAGGTCGGCTCGT
AGCGCAAAAGGAAGTGTAGTCGATTGCATCCACAGGATTGTATCATGTTAGCGAAATCAC
ACTAGGAAAAGTTGTGTTTCAACCCCCGAAACCGTGTACAGCCTCAACGAAAGCTAGCAC
AACCACCAACCACCGAGCATTAACGCTTCATTTGTCCTTCCACTGTGATTGTGGAGTCTC
TGTGGTGCAAGCCGTGCACGAGAGGCATGCAAGACTAATACAGAGAGCAGAAGGAGTGCA
CACGTTGTGTCCTTGTGTGTGTGTGTGTGTGATAAAGACGGTTCCGAACCACCCTCCCCC
CTCCGGGTGCTTTTTGTTGTTGTTGTTCACGCGTTAGCCCCAGCGCGCTGTGCTCTATCA
CCGTCGTACCACCGTAGCACCAGGTACGTGTACAGTAAGCGGCCGGGAGCTTGCCTTAAC
TGAATCCCGCAACCTGCAATCGCCGATTGGCCGATTGCCATCTGCTCCGTCAAGATACGA
TACAAACGAGGCATCATGTTTTGGGGACTCGCTCAGTATGCAG

consensusID : consensus_1504#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [CCGCCCACGCGTCCGGTTTCGCGTCCTTTACGGAATTTAGCCCGGCCCGGACTACCGGAAACCGAACTTCCACTCCAGTGCAGCAGTGCTGTGTTATCTAGGTCGGCTCGTAGCGCAAAAGGAAGTGTAGTCGATTGCATCCACGCTGTACCATGCTAACGAAATCGCACTAGGAAAAGTTGTGTTTCAACCCCGAAACCGTGTACAGCCTCAACGAAAGCTAACACAACCACCAACCACCACGAGCATTAACGCTTCATTTGTCCTTCCACTGTGATTGTGGAGTCGCTGTGGTGCAAGCCGTGCACGGGAGGCATGCAAGACTAATACAGCGAGCAGAAGGAGTGCACACGTTGTGTCCTTGTGTGTGTGTGTGATAAAGACGGTTCTGAACCCCCCTCCGGATTGTTGTTGTTGTTCACGCGTTACCCCCTCGCGCGCTGTGCTCTTTCACCGTCGTACCAGGTACGTGTACAGTAAGCGGCCGGGAGCTTGCCTTAACTGAATCCCGCAACCTGCAATCGCC]

[+] EMBL BM596775             [CCGCCCACGCGTCCGGTTTCGCGTCCTTTACGGAATTTAGCCCGGCCCGGACTACCGGAAACCGAACTTCCACTCCAGTGCAGCAGTGCTGTGTTATCTAGGTCGGCTCGTAGCGCAAAAGGAAGTGTAGTCGATTGCATCCACGCTGTACCATGCTAACGAAATCGCACTAGGAAAAGTTGTGTTTCAACCCCGAAACCGTGTACAGCCTCAACGAAAGCTAACACAACCACCAACCACCACGAGCATTAACGCTTCATTTGTCCTTCCACTGTGATTGTGGAGTCGCTGTGGTGCAAGCCGTGCACGGGAGGCATGCAAGACTAATACAGCGAGCAGAAGGAGTGCACACGTTGTGTCCTTGTGTGTGTGTGTGATAAAGACGGTTCTGAACCCCCCTCCGGATTGTTGTTGTTGTTCACGCGTTACCCCCTCGCGCGCTGTGCTCTTTCACCGTCGTACCAGGTACGTGTACAGTAAGCGGCCGGGAGCTTGCCTTAACTGAATCCCGCAACCTGCAATCGCC]




>consensus_1504#1
CCGCCCACGCGTCCGGTTTCGCGTCCTTTACGGAATTTAGCCCGGCCCGGACTACCGGAA
ACCGAACTTCCACTCCAGTGCAGCAGTGCTGTGTTATCTAGGTCGGCTCGTAGCGCAAAA
GGAAGTGTAGTCGATTGCATCCACGCTGTACCATGCTAACGAAATCGCACTAGGAAAAGT
TGTGTTTCAACCCCGAAACCGTGTACAGCCTCAACGAAAGCTAACACAACCACCAACCAC
CACGAGCATTAACGCTTCATTTGTCCTTCCACTGTGATTGTGGAGTCGCTGTGGTGCAAG
CCGTGCACGGGAGGCATGCAAGACTAATACAGCGAGCAGAAGGAGTGCACACGTTGTGTC
CTTGTGTGTGTGTGTGATAAAGACGGTTCTGAACCCCCCTCCGGATTGTTGTTGTTGTTC
ACGCGTTACCCCCTCGCGCGCTGTGCTCTTTCACCGTCGTACCAGGTACGTGTACAGTAA
GCGGCCGGGAGCTTGCCTTAACTGAATCCCGCAACCTGCAATCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1504#0      CCGCCCACGCGTCCGTGCCAACGAAAAAAATAGATCGCCAAGAGTGGAAGTAGACTTGTG 60
consensus_1504#1      ------------------------------------------------------------
                                                                                  

consensus_1504#0      CAAAAGAGAATCGCTC-TGCGTCGTGTTTCGCGTCCTTTACGGAATTTAGCCCGGCCCGG 119
consensus_1504#1      ----------CCGCCCACGCGTCCGGTTTCGCGTCCTTTACGGAATTTAGCCCGGCCCGG 50
                                 *** *  *****  ***********************************

consensus_1504#0      ACTACCGGAAACCGAACTTCCACTCCAGTGCAGCAGTGCTGTGTTATCTAGGTCGGCTCG 179
consensus_1504#1      ACTACCGGAAACCGAACTTCCACTCCAGTGCAGCAGTGCTGTGTTATCTAGGTCGGCTCG 110
                      ************************************************************

consensus_1504#0      TAGCGCAAAAGGAAGTGTAGTCGATTGCATCCACAGGATTGTATCATGTTAGCGAAATCA 239
consensus_1504#1      TAGCGCAAAAGGAAGTGTAGTCGATTGCATCCAC---GCTGTACCATGCTAACGAAATCG 167
                      **********************************     **** **** ** ******* 

consensus_1504#0      CACTAGGAAAAGTTGTGTTTCAACCCCCGAAACCGTGTACAGCCTCAACGAAAGCTAGCA 299
consensus_1504#1      CACTAGGAAAAGTTGTGTTTCAACCCC-GAAACCGTGTACAGCCTCAACGAAAGCTAACA 226
                      *************************** ***************************** **

consensus_1504#0      CAACCACCAACCACC--GAGCATTAACGCTTCATTTGTCCTTCCACTGTGATTGTGGAGT 357
consensus_1504#1      CAACCACCAACCACCACGAGCATTAACGCTTCATTTGTCCTTCCACTGTGATTGTGGAGT 286
                      ***************  *******************************************

consensus_1504#0      CTCTGTGGTGCAAGCCGTGCACGAGAGGCATGCAAGACTAATACAGAGAGCAGAAGGAGT 417
consensus_1504#1      CGCTGTGGTGCAAGCCGTGCACGGGAGGCATGCAAGACTAATACAGCGAGCAGAAGGAGT 346
                      * ********************* ********************** *************

consensus_1504#0      GCACACGTTGTGTCCTTGTGTGTGTGTGTGTGTGATAAAGACGGTTCCGAACCACCCTCC 477
consensus_1504#1      GCACACGTTGTGTCCTTGTGTGTGTGTGT----GATAAAGACGGTTCTGAACC------- 395
                      *****************************    ************** *****       

consensus_1504#0      CCCCTCCGGGTGCTTTTTGTTGTTGTTGTTCACGCGTTAGCCCCA-GCGCGCTGTGCTCT 536
consensus_1504#1      CCCCTCCGGAT------TGTTGTTGTTGTTCACGCGTTACCCCCTCGCGCGCTGTGCTCT 449
                      ********* *      ********************** ****  **************

consensus_1504#0      ATCACCGTCGTACCACCGTAGCACCAGGTACGTGTACAGTAAGCGGCCGGGAGCTTGCCT 596
consensus_1504#1      TTCACCGTCGTAC-----------CAGGTACGTGTACAGTAAGCGGCCGGGAGCTTGCCT 498
                       ************           ************************************

consensus_1504#0      TAACTGAATCCCGCAACCTGCAATCGCCGATTGGCCGATTGCCATCTGCTCCGTCAAGAT 656
consensus_1504#1      TAACTGAATCCCGCAACCTGCAATCGCC-------------------------------- 526
                      ****************************                                

consensus_1504#0      ACGATACAAACGAGGCATCATGTTTTGGGGACTCGCTCAGTATGCAG 703
consensus_1504#1      -----------------------------------------------