These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGCCCACGCGTCCGTAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGATGTTTTATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCCAGGGAGTATACGGATCAGTTGTTTCTACTGGTTCTAAAAAGCGGTATTTGCAGATGGAGATAGGGAAAACACCATTACGTGCATGCTCAAATCTGGACTCAAAACAATCTCGCTGTATATTTATATATAGTCTACTACTATGTTGTGCCTTTCTGTTACTACTATTTAGCTTAACCTTCTTCTAGGGAATCGTTTTCTTCTTTGTTTTTTGTTTGCTTCTATTTTTCCAATTTTACCACTCCAAACACTCTACCCTTGCGGTGGGAAATGCAATTTTTCTCTTCATCTTAGTGTAAAAGCTTTTACTGTTTTTGTTTTAATGGCACGGCAAGGACAAGTAAGGATAGAAACGGAGCATACAGGCGCGTCATATAACTATCTTTCGTCTAAGTATTACTAAGAAAGGGACAGAGCGAGAGAAGAGAGGCCTAGGTACGGTACAGTGTTTAGTAGCTAAGTATTTAAAATGGTTCAGTTTTGTAAAAGTCAATAAGGTAGGGAAAACGA] [+] EMBL BM609293 [CCGCCCACGCGTCCGTAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGATGTTTTATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCCAGGGAGTATACGGATCAGTTGTTTCTACTGGTTCTAAAAAGCGGTATTTGCAGATGGAGATAGGGAAAACACCATTACGTGCATGCTCAAATCTGGACTCAAAACAATCTCGCTGTATATTTATATATAGTCTACTACTATGTTGTGCCTTTCTGTTACTACTATTTAGCTTAACCTTCTTCTAGGGAATCGTTTTCTTCTTTGTTTTTTGTTTGCTTCTATTTTTCCAATTTTACCACTCCAAACACTCTACCCTTGCGGTGGGAAATGCAATTTTTCTCTTCATCTTAGTGTAAAAGCTTTTACTGTTTTTGTTTTAATGGCACGGCAAGGACAAGTAAGGATAGAAACGGAGCATACAGGCGCGTCATATAACTATCTTTCGTCTAAGTATTACTAAGAAAGGGACAGAGCGAGAGAAGAGAGGCCTAGGTACGGTACAGTGTTTAGTAGCTAAGTATTTAAAATGGTTCAGTTTTGTAAAAGTCAATAAGGTAGGGAAAACGA] consensusID : consensus_1509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [GGGAACAAAGTGGAACACGAGNATGGCTTACAGGGATGGACACTTGNGAGGAGAGAAAAACAGACAAATTAGACGCATGCGTGGAAGGTGGAGAATAGATGATCCCCTTCCGCAAGAACGATTTCAGAACAAACAAACAAATAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGATGTTTTATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCCAGGGNA] [+] EMBL BX619208 [GGGAACAAAGTGGAACACGAGNATGGCTTACAGGGATGGACACTTGNGAGGAGAGAAAAACAGACAAATTAGACGCATGCGTGGAAGGTGGAGAATAGATGATCCCCTTCCGCAAGAACGATTTCAGAACAAACAAACAAATAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGATGTTTTATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCCAGGGNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1509#0 CCGCCCACGCGTCCGTAGGCATACCGAAAAGGGACAAGTTACATGGTGGTCGGATGTTTT 60 consensus_1509#1 ------------------------------------------------------------ consensus_1509#0 ATTTTATATTTTAAGCAAAACATTCGCTTACTTCCTTTCTGTGTCGTGTATTCCAGGGAG 120 consensus_1509#1 ------------------------------------------------------GGGAAC 6 ** * consensus_1509#0 TATACGGATCAGTTGTTTCTACTGGTTCTAAAAAGCGGTATTTGCAGATGGAGATAGGGA 180 consensus_1509#1 AAAGTGGAACACGAGN----ATGGCTTACAGGGATGGACACTTGNGAGGAGAGAAAAACA 62 * *** ** * * * ** * * * * *** **** * * consensus_1509#0 AAACACCATTACGTGCATGCTCAAATCTGGACTCAAAACAATCTCGCTGTATATTTATAT 240 consensus_1509#1 GACAA--ATTAGACGCATGCGTGGAA-------------------GGTGGAGA---ATAG 98 * * **** ****** * * ** * * *** consensus_1509#0 ATAGTCTACTACTATGTTGTGCCTTTCTGTTACTACTATTTAGCTTAACCTTCTTCTAGG 300 consensus_1509#1 ATGATCCCCTTCCGCAA-GAACGATTTCAGAACAAACAAACAAATAGGCATACCGAAAAG 157 ** ** ** * * * ** ** * * * * * * * * * consensus_1509#0 GAATCGTTTTCTTCTTTGTTTTTTGTTTGCTTCTATTTTTCCAATTTTACCACTCCAAAC 360 consensus_1509#1 GGACAAGTTACATGGTGGTCGGATGTTTTATTTTATATTTTAAGCAAAAC--ATTCGCTT 215 * * ** * * * ** ***** ** *** *** * ** * * consensus_1509#0 ACTCTACCCTTGCGGTGGGAAATGCAATTTTTCTCTTCATCTTAGTGTAAAAGCTTTTAC 420 consensus_1509#1 ACTTCCTTTCTGTGTCGTGTATTCCAGGGNA----------------------------- 246 *** ** * * * * * ** consensus_1509#0 TGTTTTTGTTTTAATGGCACGGCAAGGACAAGTAAGGATAGAAACGGAGCATACAGGCGC 480 consensus_1509#1 ------------------------------------------------------------ consensus_1509#0 GTCATATAACTATCTTTCGTCTAAGTATTACTAAGAAAGGGACAGAGCGAGAGAAGAGAG 540 consensus_1509#1 ------------------------------------------------------------ consensus_1509#0 GCCTAGGTACGGTACAGTGTTTAGTAGCTAAGTATTTAAAATGGTTCAGTTTTGTAAAAG 600 consensus_1509#1 ------------------------------------------------------------ consensus_1509#0 TCAATAAGGTAGGGAAAACGA 621 consensus_1509#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||