These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1511#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 895 fasta sequence [AGGCAGAATTCCCGAGGTTAAGTTTTAGCAGGAGCAGAAGCAGAATATGAAGTTTGGCAAACTGGCAAGCAGAATAGTGCGCCACAGCAGAAGCGTTCGTCCTGTTGGAGCGTGAGTGCCTGGGTGTACGTAAATGGGCAAGTTACTTCCTTCGAGATATTATGGGCTGCCAGCTNCACTTCTCTTTAANATACAGCACTATNTACCAAAATTTNTGCCCTATGCAGGCTANNCTTTACTTGGAACCGCAACACAACCTTTCACACCCCCGGCCANGAAGGAAAACCCAAGGNTCTTGGCAAGCCCACTGGGTATACAACCGGGTTCCCACTCACNCAACTTNACTATATCANCCAACCCTTACTATCTCCTANCCATTAACCCNATATGGGCNACCCGACANCAAAATTCCGACCAGCACCCCCATATACCACACACACACCGGAGATACACACAACAAANGCTCNTACCCTTGGACTGGCTTNCCANCTTCTAACTTAACGCGAACACTTGGCCACACATTGGATTCCCACTTGGNACTTTCCCACACTTTGGCTTTCNAACNCATCGCGGCCCNGCTTCCCACNCACACTTTNACCACCACGGGCGCCCAACCTTNCACCNGCGGCATGGCACTACCCNGCGCGCCCCATCTNGCAAACCATGGCCAACATTGGAGNCATGGAAAACAACACCGGCGGCCGGACGCGCGTCNTGGGACCACNCCTCATGGGGCGCCCCAGCGAACATCTATCCAACAAGGGCCACAACCCCCGGTGGGCAACACAAACCCCACAAAGCCACCCAACACCCGNCGCCCACCTTNGCAGCCCACACGCCACACACGCGGGGCACAGCCAACGCCAACNNGAACGCAAAGGCAAAGANAACGCAN] [+] EMBL AL692523 [AGGCAGAATTCCCGAGGTTAAGTTTTAGCAGGAGCAGAAGCAGAATATGAAGTTTGGCAAACTGGCAAGCAGAATAGTGCGCCACAGCAGAAGCGTTCGTCCTGTTGGAGCGTGAGTGCCTGGGTGTACGTAAATGGGCAAGTTACTTCCTTCGAGATATTATGGGCTGCCAGCTNCACTTCTCTTTAANATACAGCACTATNTACCAAAATTTNTGCCCTATGCAGGCTANNCTTTACTTGGAACCGCAACACAACCTTTCACACCCCCGGCCANGAAGGAAAACCCAAGGNTCTTGGCAAGCCCACTGGGTATACAACCGGGTTCCCACTCACNCAACTTNACTATATCANCCAACCCTTACTATCTCCTANCCATTAACCCNATATGGGCNACCCGACANCAAAATTCCGACCAGCACCCCCATATACCACACACACACCGGAGATACACACAACAAANGCTCNTACCCTTGGACTGGCTTNCCANCTTCTAACTTAACGCGAACACTTGGCCACACATTGGATTCCCACTTGGNACTTTCCCACACTTTGGCTTTCNAACNCATCGCGGCCCNGCTTCCCACNCACACTTTNACCACCACGGGCGCCCAACCTTNCACCNGCGGCATGGCACTACCCNGCGCGCCCCATCTNGCAAACCATGGCCAACATTGGAGNCATGGAAAACAACACCGGCGGCCGGACGCGCGTCNTGGGACCACNCCTCATGGGGCGCCCCAGCGAACATCTATCCAACAAGGGCCACAACCCCCGGTGGGCAACACAAACCCCACAAAGCCACCCAACACCCGNCGCCCACCTTNGCAGCCCACACGCCACACACGCGGGGCACAGCCAACGCCAACNNGAACGCAAAGGCAAAGANAACGCAN] consensusID : consensus_1511#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence [CCGCGCCACCAGCAGAAGCGTTCGTCTTGTTGGAGCGTGAGTGCCGGGTGTCACGTAAATGGGCAAGTTACTTCCTTCGGTTTTGGTTGCAGTTTTTTTTTTTGCTTTCCAATTTGCTTGAGCTAGTTTGGACAAAACTTCAACCCGCAGAGAACCAGTCTGGAGCCATGGTTTTTGTTTTATTTTATTTTTTCACTTTTACTACTTGTCGTTATCGGCCTTTTTTTCTGGTTTTTAGTTACTGTGTTTTATTAATAGGAATGCAGTGTCATGATAAATGTCAGTCGGCGTTAAAATTAAAGGGCATTCGGTGTCCGTGCTTGTTGATGGTGAAACGGCGGGGTGGCTTTGTGCAGGATTTTTGCAAACGGAAACAACACAACGGATGAGAGGAGGGAGAGAGAGAGAGAGATGGGGTGAAAACTTGTTTTGATAAACGTTTATATACAAACATTTCTCGAGTTCTGCCAAATATTATAGAGCAAGTCGTTTGGTGAAGGGCAAAATGAGACCCTCGGTTATTAATTT] [+] EMBL BM643008 [CCGCGCCACCAGCAGAAGCGTTCGTCTTGTTGGAGCGTGAGTGCCGGGTGTCACGTAAATGGGCAAGTTACTTCCTTCGGTTTTGGTTGCAGTTTTTTTTTTTGCTTTCCAATTTGCTTGAGCTAGTTTGGACAAAACTTCAACCCGCAGAGAACCAGTCTGGAGCCATGGTTTTTGTTTTATTTTATTTTTTCACTTTTACTACTTGTCGTTATCGGCCTTTTTTTCTGGTTTTTAGTTACTGTGTTTTATTAATAGGAATGCAGTGTCATGATAAATGTCAGTCGGCGTTAAAATTAAAGGGCATTCGGTGTCCGTGCTTGTTGATGGTGAAACGGCGGGGTGGCTTTGTGCAGGATTTTTGCAAACGGAAACAACACAACGGATGAGAGGAGGGAGAGAGAGAGAGAGATGGGGTGAAAACTTGTTTTGATAAACGTTTATATACAAACATTTCTCGAGTTCTGCCAAATATTATAGAGCAAGTCGTTTGGTGAAGGGCAAAATGAGACCCTCGGTTATTAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1511#0 AGGCAGAATTCCCGAGGTTAAGTTTTAGCAGGAGCAGAAGCAGAATATGAAGTTTGGCAA 60 consensus_1511#1 ------------------------------------------------------------ consensus_1511#0 ACTGGCAAGCAGAATAGTGCGCCAC-AGCAGAAGCGTTCGTCCTGTTGGAGCGTGAGTGC 119 consensus_1511#1 ----------------CCGCGCCACCAGCAGAAGCGTTCGTCTTGTTGGAGCGTGAGTGC 44 ******* **************** ***************** consensus_1511#0 CTGGGTGTACGTAAATGGGCAAGTTACTTCCTTCGAGATATTATGGGCTGCCAGCTNCAC 179 consensus_1511#1 CGGGTGTCACGTAAATGGGCAAGTTACTTCCTTCGG------------TTTTGGTTGCAG 92 * ** *************************** * * * ** consensus_1511#0 TTCTCTTTAANATACAGCACTATNTACCAAAATTTNTGCCCTATGCAGGCTANNCTTTAC 239 consensus_1511#1 TTTTTTTTT----------TTGCTTTCCAA----TTTGCTTGAGCTAGTTTGGACAAAAC 138 ** * *** * * **** * *** * ** * * ** consensus_1511#0 TTGGAACCGCAACACAACCTTTCACACCCCCGGCCANGAAGGAAAACCCAAGGNTCTTGG 299 consensus_1511#1 TTCAACCCGCAGAGAACCAGTCTGGAGCCATGGTTTTT--GTTTTATTTTATTTTTTCAC 196 ** * ***** * * * * ** ** * * * * * consensus_1511#0 CAAGCCCACTGGGTATACAACCGGGTTCCCACTCACNCAACTTNACTATATCANCCAACC 359 consensus_1511#1 TTTTACTACTTGTCGT--TATCGG---CCTTTTTTTCTGGTTTT----TAGTTACTGTGT 247 * *** * * * *** ** * ** ** * consensus_1511#0 CTTACTATCTCCTANCCATTAACCCNATATGGGCNACCCGACANCAAAATTCCGACCAGC 419 consensus_1511#1 TTTATTAATAGGAATGCAGTGTCATGATAAATGTCAGTCGGCGTTAAAATT--AAAGGGC 305 *** ** * ** * * *** * * ** * ****** * ** consensus_1511#0 ACCCCCATATACCACACACACACCGGAGATACACACAACAAANGCTCNTACCCTTGGACT 479 consensus_1511#1 ATTC---GGTGTC-CGTGCTTGTTGATGGTGAA-ACGGCGGGG-----TGGCTTTGTGCA 355 * * * * * * * * * * ** * * * *** * consensus_1511#0 GGCTTNCCANCTTCTAACTTAACGCGAACACTTGGCCACACATTGGATTCCCACTTGGNA 539 consensus_1511#1 GGATTTTTGCAAACGGAAACAACACAACGGATGAGAGGAGGGAGAGAGAGAGA---GAGA 412 ** ** * * *** * * * * ** * * * consensus_1511#0 CTTTCCCACACTTTGGCTTTCNAACNCATCGCGGCCCNGCTTCCCACNCACACT-TTNAC 598 consensus_1511#1 TGGGGTGAAAACTTGTTTTGATAAACGTTTATATACAAACATTTCTCGAGTTCTGCCAAA 472 * * *** ** ** * * * * * * ** * consensus_1511#0 CACCACGGGCGCCCAACCTTNCACCNGCGGCATGGCACTACCCNGCGCGCCCCATCTNGC 658 consensus_1511#1 TATTATAGA-GCAAGTCGTTTGGTGAAGGGCAAAATGAGACCCTCGGTTATTAATTT--- 528 * * * ** * ** **** **** * ** * consensus_1511#0 AAACCATGGCCAACATTGGAGNCATGGAAAACAACACCGGCGGCCGGACGCGCGTCNTGG 718 consensus_1511#1 ------------------------------------------------------------ consensus_1511#0 GACCACNCCTCATGGGGCGCCCCAGCGAACATCTATCCAACAAGGGCCACAACCCCCGGT 778 consensus_1511#1 ------------------------------------------------------------ consensus_1511#0 GGGCAACACAAACCCCACAAAGCCACCCAACACCCGNCGCCCACCTTNGCAGCCCACACG 838 consensus_1511#1 ------------------------------------------------------------ consensus_1511#0 CCACACACGCGGGGCACAGCCAACGCCAACNNGAACGCAAAGGCAAAGANAACGCAN 895 consensus_1511#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||