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Anopheles gambiae
cluster # 1513 cluster # 1513       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1513#0 length = 790 sequences # 1  
consensus_1513#1 length = 654 sequences # 1  

consensusID : consensus_1513#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 790
fasta sequence
                              [CCCGAGGTTATAACTACTTTATACAAACACATGACAATCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAACATTGTNTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAACTTNGAACTTCCTGGCATAGAAAGTTTGCTGAACTNGATTACTCTGTACTAACTTTTCAAAGCGAACATGTCCGCCGTACTCTACATTTNTAGCTGTTAAATTTCGATACTTTACATGTTCATTTGANCTTTCCGCTNCTCGGCAACACGAACCAAGCTTTTAAGTATACGTTCGTTTTCGTTTCAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGCTGCTTATGAGTGATAGCTTGTCTTTTGAGCCTCGTGCTTGCAAGATGCTGCAGAACCTTCTACTGGAATAGATATTCATCTCATGCATCCTCATNTAACTAGTTCTCGGTCGTNGTNCTTGCNCAGAGAGAGAGACNCCTATCATGNNTTAACCATGTGTTTACCGAGCCACACACACA]

[+] EMBL AL692547             [CCCGAGGTTATAACTACTTTATACAAACACATGACAATCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAACATTGTNTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAACTTNGAACTTCCTGGCATAGAAAGTTTGCTGAACTNGATTACTCTGTACTAACTTTTCAAAGCGAACATGTCCGCCGTACTCTACATTTNTAGCTGTTAAATTTCGATACTTTACATGTTCATTTGANCTTTCCGCTNCTCGGCAACACGAACCAAGCTTTTAAGTATACGTTCGTTTTCGTTTCAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGCTGCTTATGAGTGATAGCTTGTCTTTTGAGCCTCGTGCTTGCAAGATGCTGCAGAACCTTCTACTGGAATAGATATTCATCTCATGCATCCTCATNTAACTAGTTCTCGGTCGTNGTNCTTGCNCAGAGAGAGAGACNCCTATCATGNNTTAACCATGTGTTTACCGAGCCACACACACA]


>consensus_1513#0 CCCGAGGTTATAACTACTTTATACAAACACATGACAATCGGCCATAGCGGTTCTCCCCAC TATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAA CTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGAT AGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTG TGCGGTGATTCTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAG GAGGGTTAAAATATTATTTAAACATTGTNTTTGGCAACAGTAACGAATCGCGTCGAAGAA TAGAACTTNGAACTTCCTGGCATAGAAAGTTTGCTGAACTNGATTACTCTGTACTAACTT TTCAAAGCGAACATGTCCGCCGTACTCTACATTTNTAGCTGTTAAATTTCGATACTTTAC ATGTTCATTTGANCTTTCCGCTNCTCGGCAACACGAACCAAGCTTTTAAGTATACGTTCG TTTTCGTTTCAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGA TGATATTTAGCTGCTTATGAGTGATAGCTTGTCTTTTGAGCCTCGTGCTTGCAAGATGCT GCAGAACCTTCTACTGGAATAGATATTCATCTCATGCATCCTCATNTAACTAGTTCTCGG TCGTNGTNCTTGCNCAGAGAGAGAGACNCCTATCATGNNTTAACCATGTGTTTACCGAGC CACACACACA



consensusID : consensus_1513#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence
                              [GCAGAAAAGCCCCTTACATACTCCGGCTCGATATTACTGATTCAGTTTCACAGTCAAACTACTTTATACAAAACACATGACAAACCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAAATTGTTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAATTTGAATTAATGGATAGAAAGTTTGCTGAATTGATTACTCTGTACTAACTTTTCAAAGCGAAATGTTGCCGTACTCTACATTTTTAGTGTTAAATTTCGATACTTTACATGTTCATTTGAATTTCCGTTTTGGAAAACGAACCAAGCTTTTAAGTATACGTTGTTTTCGTTTTAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGTGCTTATCGG]

[-] EMBL BM592193             [GCAGAAAAGCCCCTTACATACTCCGGCTCGATATTACTGATTCAGTTTCACAGTCAAACTACTTTATACAAAACACATGACAAACCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAAATTGTTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAATTTGAATTAATGGATAGAAAGTTTGCTGAATTGATTACTCTGTACTAACTTTTCAAAGCGAAATGTTGCCGTACTCTACATTTTTAGTGTTAAATTTCGATACTTTACATGTTCATTTGAATTTCCGTTTTGGAAAACGAACCAAGCTTTTAAGTATACGTTGTTTTCGTTTTAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGTGCTTATCGG]


>consensus_1513#1 GCAGAAAAGCCCCTTACATACTCCGGCTCGATATTACTGATTCAGTTTCACAGTCAAACT ACTTTATACAAAACACATGACAAACCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCC ACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTAC TTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAA AAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTT TTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAAT ATTATTTAAAATTGTTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAATTTGAATTA ATGGATAGAAAGTTTGCTGAATTGATTACTCTGTACTAACTTTTCAAAGCGAAATGTTGC CGTACTCTACATTTTTAGTGTTAAATTTCGATACTTTACATGTTCATTTGAATTTCCGTT TTGGAAAACGAACCAAGCTTTTAAGTATACGTTGTTTTCGTTTTAGTTGTGCTAGGGACG TAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGTGCTTATCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1513#0      ----------------------------------------------CCCGAGGTTATAAC 14
consensus_1513#1      GCAGAAAAGCCCCTTACATACTCCGGCTCGATATTACTGATTCAGTTTCACAGTCA-AAC 59
                                                                      *   ** * ***

consensus_1513#0      TACTTTATACAAA-CACATGACAA-TCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCC 72
consensus_1513#1      TACTTTATACAAAACACATGACAAACCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCC 119
                      ************* **********  **********************************

consensus_1513#0      CACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTA 132
consensus_1513#1      CACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTA 179
                      ************************************************************

consensus_1513#0      CTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAA 192
consensus_1513#1      CTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAA 239
                      ************************************************************

consensus_1513#0      AAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCT 252
consensus_1513#1      AAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCT 299
                      ************************************************************

consensus_1513#0      TTT-GTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAA 311
consensus_1513#1      TTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAA 359
                      *** ********************************************************

consensus_1513#0      TATTATTTAAACATTGTNTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAACTTNGA 371
consensus_1513#1      TATTATTTAAA-ATTGTTTT-GGCAACAGTAACGAATCGCGTCGAAGAATAGAATTTGAA 417
                      *********** ***** ** ********************************* **  *

consensus_1513#0      ACTTCCTGGCATAGAAAGTTTGCTGAACTNGATTACTCTGTACTAACTTTTCAAAGCGAA 431
consensus_1513#1      --TTAATGG-ATAGAAAGTTTGCTGAA-TTGATTACTCTGTACTAACTTTTCAAAGCGAA 473
                        **  *** ***************** * ******************************

consensus_1513#0      CATGTCCGCCGTACTCTACATTTNTAGCTGTTAAATTTCGATACTTTACATGTTCATTTG 491
consensus_1513#1      -ATGTT-GCCGTACTCTACATTTTTAG-TGTTAAATTTCGATACTTTACATGTTCATTTG 530
                       ****  **************** *** ********************************

consensus_1513#0      ANCTTTCCGCTNCTCGGCAACACGAACCAAGCTTTTAAGTATACGTTCGTTTTCGTTTCA 551
consensus_1513#1      AA-TTTCCGTTTT---GGAAAACGAACCAAGCTTTTAAGTATACGTT-GTTTTCGTTTTA 585
                      *  ****** *     * ** ************************** ********** *

consensus_1513#0      GTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGC 611
consensus_1513#1      GTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAG- 644
                      *********************************************************** 

consensus_1513#0      TGCTTATGAGTGATAGCTTGTCTTTTGAGCCTCGTGCTTGCAAGATGCTGCAGAACCTTC 671
consensus_1513#1      TGCTTATCGG-------------------------------------------------- 654
                      *******  *                                                  

consensus_1513#0      TACTGGAATAGATATTCATCTCATGCATCCTCATNTAACTAGTTCTCGGTCGTNGTNCTT 731
consensus_1513#1      ------------------------------------------------------------
                                                                                  

consensus_1513#0      GCNCAGAGAGAGAGACNCCTATCATGNNTTAACCATGTGTTTACCGAGCCACACACACA 790
consensus_1513#1      -----------------------------------------------------------
                                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)