These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [CCGGCTTGGGGGAAAACTACACCGCGCGCTAAAAAAAAAAAACAAATTTCCATACTAACATACACACACCCTCTCACACGCCAAAAACCCAACGTCCGCTTCCGTGTTCTTGTTTTTTTTTGTGTTCCGTTCTAGTTGGATGGCGAATTTGGAAGCTTGCTGACGAAATTTTCCGCCCAACTGAAGGACAACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAACTCCTCCTCCTCCTCCTCCTCCACCAACAGCACCGTTTCCAAGGCAGCAGCCACCAATGCTAAGCGGGCCGAACCGATCGTTCAAGTAAATAACCAAATTGGCCAAAATGTGCACCGCTTTTGTAAATGCTAAATGCTAAAATGTCACACGTAGTCACACACACACAGCCTCATTTTCCACAACCCCTTCGTAAGATGGCTTTGATGGTGCTGTTAGTA] [+] EMBL BM609195 [CCGGCTTGGGGGAAAACTACACCGCGCGCTAAAAAAAAAAAACAAATTTCCATACTAACATACACACACCCTCTCACACGCCAAAAACCCAACGTCCGCTTCCGTGTTCTTGTTTTTTTTTGTGTTCCGTTCTAGTTGGATGGCGAATTTGGAAGCTTGCTGACGAAATTTTCCGCCCAACTGAAGGACAACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAACTCCTCCTCCTCCTCCTCCTCCACCAACAGCACCGTTTCCAAGGCAGCAGCCACCAATGCTAAGCGGGCCGAACCGATCGTTCAAGTAAATAACCAAATTGGCCAAAATGTGCACCGCTTTTGTAAATGCTAAATGCTAAAATGTCACACGTAGTCACACACACACAGCCTCATTTTCCACAACCCCTTCGTAAGATGGCTTTGATGGTGCTGTTAGTA] consensusID : consensus_1516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 150 fasta sequence [ACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAACTCCTCCTCCTCCTCCTCCTCCAACAGCGCCGTTTCCAAGGCAGCAACCACCAATGCTAAGAGGGCCGAACCGATCGTTCAAACGGTTGCACCGTTCGGTG] [+] EMBL BM640938 [ACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAACTCCTCCTCCTCCTCCTCCTCCAACAGCGCCGTTTCCAAGGCAGCAACCACCAATGCTAAGAGGGCCGAACCGATCGTTCAAACGGTTGCACCGTTCGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1516#0 CCGGCTTGGGGGAAAACTACACCGCGCGCTAAAAAAAAAAAACAAATTTCCATACTAACA 60 consensus_1516#1 ------------------------------------------------------------ consensus_1516#0 TACACACACCCTCTCACACGCCAAAAACCCAACGTCCGCTTCCGTGTTCTTGTTTTTTTT 120 consensus_1516#1 ------------------------------------------------------------ consensus_1516#0 TGTGTTCCGTTCTAGTTGGATGGCGAATTTGGAAGCTTGCTGACGAAATTTTCCGCCCAA 180 consensus_1516#1 ------------------------------------------------------------ consensus_1516#0 CTGAAGGACAACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAAC 240 consensus_1516#1 ----------ACTGGGTCAAGATTTACATAACCTCCTCCTCTTCTTCTTCTTCTTCCAAC 50 ************************************************** consensus_1516#0 TCCTCCTCCTCCTCCTCCTCCACCAACAGCACCGTTTCCAAGGCAGCAGCCACCAATGCT 300 consensus_1516#1 TCCTCCTCCTCCTCCTCCTCC---AACAGCGCCGTTTCCAAGGCAGCAACCACCAATGCT 107 ********************* ****** ***************** *********** consensus_1516#0 AAGCGGGCCGAACCGATCGTTCAAGTAAATAACCAAATTGGCCAAAATGTGCACCGCTTT 360 consensus_1516#1 AAGAGGGCCGAACCGATCGTTCAAACGGTTGCACCGTTCGGTG----------------- 150 *** ******************** * * * ** consensus_1516#0 TGTAAATGCTAAATGCTAAAATGTCACACGTAGTCACACACACACAGCCTCATTTTCCAC 420 consensus_1516#1 ------------------------------------------------------------ consensus_1516#0 AACCCCTTCGTAAGATGGCTTTGATGGTGCTGTTAGTA 458 consensus_1516#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||