These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CCGAAATGGCTTCCGTTTGTATCCGTTTGTCCTGCATTGTTTGCGTACATTGTGTAAAAGTTGAATGAGAACATTTAACTAAGTAATAGAAGGCAGATTATTTTAAAAAAATTATAACCAGTACAGGCATTTGTTTAAAAAAATAATAACGAAACAAAGGCTTGCTGTTTAATAGCCTACATTAATTAAAATTATATCATTCATTACTATATGTTATGGTTAAAATTATTTCTTTCTATTTCAATTTGCCAATCAATAGCTTCCTGTTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGTCAAACTGATAAAGCGATAAGCAGAAGATAAGAAATTCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGATGAGGTGAAAGGTACCCCGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAACAAACAACAAAGGCAGAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACTATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCCCCTCATGTGACCATGGTACTGTTTGTGGTAATGGGTGTTTTTAGGTTCTGTTTCGTGCAAAACGCGCTGCATTCAC] [+] EMBL BM621271 [CCGAAATGGCTTCCGTTTGTATCCGTTTGTCCTGCATTGTTTGCGTACATTGTGTAAAAGTTGAATGAGAACATTTAACTAAGTAATAGAAGGCAGATTATTTTAAAAAAATTATAACCAGTACAGGCATTTGTTTAAAAAAATAATAACGAAACAAAGGCTTGCTGTTTAATAGCCTACATTAATTAAAATTATATCATTCATTACTATATGTTATGGTTAAAATTATTTCTTTCTATTTCAATTTGCCAATCAATAGCTTCCTGTTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGTCAAACTGATAAAGCGATAAGCAGAAGATAAGAAATTCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGATGAGGTGAAAGGTACCCCGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAACAAACAACAAAGGCAGAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACTATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCCCCTCATGTGACCATGGTACTGTTTGTGGTAATGGGTGTTTTTAGGTTCTGTTTCGTGCAAAACGCGCTGCATTCAC] consensusID : consensus_1532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CCGAAGTAATAGAAGGTAGGTTTTTTTTTAAATAATTATAACCAGTACAGAAATTTGTTGTAAAAAACGATAACGAGACAAAGGCTTGCCGTTTAATAGTCATTGTTAAAACTATATCATTGTTTACTATATGTTTTGGTTCAAATTAATTCTTTCTATTTCAATTTGTCAATCAATAGCTTAAAATTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGACAAACTGATAAAGCGATAAGCAAAACGATAAGAAAATCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGACGAGGTGAAAGGTACCCCGGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAAACGAGAACAAAGGCAAAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACCATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCGCCCCCCCTCATGTGACCATGATACTGTTTGTGGTAATGGTGAGTTTTTAGGTTCTGTTTCGTGCAAATAGCGCTGCATACACAATAACTG] [+] EMBL BM608971 [CCGAAGTAATAGAAGGTAGGTTTTTTTTTAAATAATTATAACCAGTACAGAAATTTGTTGTAAAAAACGATAACGAGACAAAGGCTTGCCGTTTAATAGTCATTGTTAAAACTATATCATTGTTTACTATATGTTTTGGTTCAAATTAATTCTTTCTATTTCAATTTGTCAATCAATAGCTTAAAATTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGACAAACTGATAAAGCGATAAGCAAAACGATAAGAAAATCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGACGAGGTGAAAGGTACCCCGGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAAACGAGAACAAAGGCAAAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACCATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCGCCCCCCCTCATGTGACCATGATACTGTTTGTGGTAATGGTGAGTTTTTAGGTTCTGTTTCGTGCAAATAGCGCTGCATACACAATAACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1532#0 CCGAAATGGCTTCCGTTTGTATCCGTTTGTCCTGCATTGTTTGCGTACATTGTGTAAAAG 60 consensus_1532#1 ------------------------------------------------------------ consensus_1532#0 TTGAATGAGAACATTTAACTAAGTAATAGAAGGCAGATTATTTTAAAAA-AATTATAACC 119 consensus_1532#1 -----------------CCGAAGTAATAGAAGGTAGGTTTTTTTTTAAATAATTATAACC 43 * ************* ** ** **** *** ********** consensus_1532#0 AGTACAGGCATTTGTTTAAAAAAATAATAACGAAACAAAGGCTTGCTGTTTAATAGCCTA 179 consensus_1532#1 AGTACAGAAATTTGTTGTAAAAAACGATAACGAGACAAAGGCTTGCCGTTTAATAGTC-- 101 ******* ******* ****** ******* ************ ********* * consensus_1532#0 CATTAATTAAAATTATATCATTCATTACTATATGTTATGGTTAAAATTATTTCTTTCTAT 239 consensus_1532#1 -ATTG-TTAAAACTATATCATTGTTTACTATATGTTTTGGTTCAAATTAATTCTTTCTAT 159 *** ****** ********* ************ ***** ****** ********** consensus_1532#0 TTCAATTTGCCAATCAATAGCTTCCTGTTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCT 299 consensus_1532#1 TTCAATTTGTCAATCAATAGCTTAAAATTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCT 219 ********* ************* ********************************* consensus_1532#0 ACCTTCTTAGGCAATCGTCAAACTGATAAAGCGATAAGCAGAA-GATAAGAAATTCGTAC 358 consensus_1532#1 ACCTTCTTAGGCAATCGACAAACTGATAAAGCGATAAGCAAAACGATAAGAAAATCGTAC 279 ***************** ********************** ** ********* ****** consensus_1532#0 AGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCT 418 consensus_1532#1 AGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCT 339 ************************************************************ consensus_1532#0 AATACAATATTTAATGTGGTAATTTGATGAGGTGAAAGGTACCCCGG-TACCGGGGTATG 477 consensus_1532#1 AATACAATATTTAATGTGGTAATTTGACGAGGTGAAAGGTACCCCGGGTACCGGGGTATG 399 *************************** ******************* ************ consensus_1532#0 AGCAGTAGCAAATGGCACAGCATTAACAAACAACAAAGGCAGAGAACCTCCTTCCGCCAA 537 consensus_1532#1 AGCAGTAGCAAATGGCACAGCATTAAACGAGAACAAAGGCAAAGAACCTCCTTCCGCCAA 459 ************************** * ********** ****************** consensus_1532#0 AAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACTATTTTTGCCAAAAAATATAA 597 consensus_1532#1 AAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACCATTTTTGCCAAAAAATATAA 519 *************************************** ******************** consensus_1532#0 AGCAAAACTGCATCCTCCC-----CCCTCATGTGACCATGGTACTGTTTGTGGTAATGG- 651 consensus_1532#1 AGCAAAACTGCATCCTCCCGCCCCCCCTCATGTGACCATGATACTGTTTGTGGTAATGGT 579 ******************* **************** ****************** consensus_1532#0 GTGTTTTTAGGTTCTGTTTCGTGCAAAACGCGCTGCATTCAC-------- 693 consensus_1532#1 GAGTTTTTAGGTTCTGTTTCGTGCAAATAGCGCTGCATACACAATAACTG 629 * ************************* ********* *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||