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Anopheles gambiae
cluster # 1532 cluster # 1532       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1532#0 length = 693 sequences # 1  
consensus_1532#1 length = 629 sequences # 1  

consensusID : consensus_1532#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence
                              [CCGAAATGGCTTCCGTTTGTATCCGTTTGTCCTGCATTGTTTGCGTACATTGTGTAAAAGTTGAATGAGAACATTTAACTAAGTAATAGAAGGCAGATTATTTTAAAAAAATTATAACCAGTACAGGCATTTGTTTAAAAAAATAATAACGAAACAAAGGCTTGCTGTTTAATAGCCTACATTAATTAAAATTATATCATTCATTACTATATGTTATGGTTAAAATTATTTCTTTCTATTTCAATTTGCCAATCAATAGCTTCCTGTTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGTCAAACTGATAAAGCGATAAGCAGAAGATAAGAAATTCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGATGAGGTGAAAGGTACCCCGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAACAAACAACAAAGGCAGAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACTATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCCCCTCATGTGACCATGGTACTGTTTGTGGTAATGGGTGTTTTTAGGTTCTGTTTCGTGCAAAACGCGCTGCATTCAC]

[+] EMBL BM621271             [CCGAAATGGCTTCCGTTTGTATCCGTTTGTCCTGCATTGTTTGCGTACATTGTGTAAAAGTTGAATGAGAACATTTAACTAAGTAATAGAAGGCAGATTATTTTAAAAAAATTATAACCAGTACAGGCATTTGTTTAAAAAAATAATAACGAAACAAAGGCTTGCTGTTTAATAGCCTACATTAATTAAAATTATATCATTCATTACTATATGTTATGGTTAAAATTATTTCTTTCTATTTCAATTTGCCAATCAATAGCTTCCTGTTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGTCAAACTGATAAAGCGATAAGCAGAAGATAAGAAATTCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGATGAGGTGAAAGGTACCCCGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAACAAACAACAAAGGCAGAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACTATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCCCCTCATGTGACCATGGTACTGTTTGTGGTAATGGGTGTTTTTAGGTTCTGTTTCGTGCAAAACGCGCTGCATTCAC]


>consensus_1532#0 CCGAAATGGCTTCCGTTTGTATCCGTTTGTCCTGCATTGTTTGCGTACATTGTGTAAAAG TTGAATGAGAACATTTAACTAAGTAATAGAAGGCAGATTATTTTAAAAAAATTATAACCA GTACAGGCATTTGTTTAAAAAAATAATAACGAAACAAAGGCTTGCTGTTTAATAGCCTAC ATTAATTAAAATTATATCATTCATTACTATATGTTATGGTTAAAATTATTTCTTTCTATT TCAATTTGCCAATCAATAGCTTCCTGTTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTA CCTTCTTAGGCAATCGTCAAACTGATAAAGCGATAAGCAGAAGATAAGAAATTCGTACAG ACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAA TACAATATTTAATGTGGTAATTTGATGAGGTGAAAGGTACCCCGGTACCGGGGTATGAGC AGTAGCAAATGGCACAGCATTAACAAACAACAAAGGCAGAGAACCTCCTTCCGCCAAAAA CAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACTATTTTTGCCAAAAAATATAAAGC AAAACTGCATCCTCCCCCCTCATGTGACCATGGTACTGTTTGTGGTAATGGGTGTTTTTA GGTTCTGTTTCGTGCAAAACGCGCTGCATTCAC



consensusID : consensus_1532#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence
                              [CCGAAGTAATAGAAGGTAGGTTTTTTTTTAAATAATTATAACCAGTACAGAAATTTGTTGTAAAAAACGATAACGAGACAAAGGCTTGCCGTTTAATAGTCATTGTTAAAACTATATCATTGTTTACTATATGTTTTGGTTCAAATTAATTCTTTCTATTTCAATTTGTCAATCAATAGCTTAAAATTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGACAAACTGATAAAGCGATAAGCAAAACGATAAGAAAATCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGACGAGGTGAAAGGTACCCCGGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAAACGAGAACAAAGGCAAAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACCATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCGCCCCCCCTCATGTGACCATGATACTGTTTGTGGTAATGGTGAGTTTTTAGGTTCTGTTTCGTGCAAATAGCGCTGCATACACAATAACTG]

[+] EMBL BM608971             [CCGAAGTAATAGAAGGTAGGTTTTTTTTTAAATAATTATAACCAGTACAGAAATTTGTTGTAAAAAACGATAACGAGACAAAGGCTTGCCGTTTAATAGTCATTGTTAAAACTATATCATTGTTTACTATATGTTTTGGTTCAAATTAATTCTTTCTATTTCAATTTGTCAATCAATAGCTTAAAATTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGACAAACTGATAAAGCGATAAGCAAAACGATAAGAAAATCGTACAGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTAATTTGACGAGGTGAAAGGTACCCCGGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGCATTAAACGAGAACAAAGGCAAAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACCATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCGCCCCCCCTCATGTGACCATGATACTGTTTGTGGTAATGGTGAGTTTTTAGGTTCTGTTTCGTGCAAATAGCGCTGCATACACAATAACTG]


>consensus_1532#1 CCGAAGTAATAGAAGGTAGGTTTTTTTTTAAATAATTATAACCAGTACAGAAATTTGTTG TAAAAAACGATAACGAGACAAAGGCTTGCCGTTTAATAGTCATTGTTAAAACTATATCAT TGTTTACTATATGTTTTGGTTCAAATTAATTCTTTCTATTTCAATTTGTCAATCAATAGC TTAAAATTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCTACCTTCTTAGGCAATCGACAA ACTGATAAAGCGATAAGCAAAACGATAAGAAAATCGTACAGACTTTAAATCAAAGATGCA ACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCTAATACAATATTTAATGTGGTA ATTTGACGAGGTGAAAGGTACCCCGGGTACCGGGGTATGAGCAGTAGCAAATGGCACAGC ATTAAACGAGAACAAAGGCAAAGAACCTCCTTCCGCCAAAAACAAATGCTTCTAGTTCAC TATCGTCAAAAATAGTACCATTTTTGCCAAAAAATATAAAGCAAAACTGCATCCTCCCGC CCCCCCTCATGTGACCATGATACTGTTTGTGGTAATGGTGAGTTTTTAGGTTCTGTTTCG TGCAAATAGCGCTGCATACACAATAACTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1532#0      CCGAAATGGCTTCCGTTTGTATCCGTTTGTCCTGCATTGTTTGCGTACATTGTGTAAAAG 60
consensus_1532#1      ------------------------------------------------------------
                                                                                  

consensus_1532#0      TTGAATGAGAACATTTAACTAAGTAATAGAAGGCAGATTATTTTAAAAA-AATTATAACC 119
consensus_1532#1      -----------------CCGAAGTAATAGAAGGTAGGTTTTTTTTTAAATAATTATAACC 43
                                        * ************* ** ** ****  *** **********

consensus_1532#0      AGTACAGGCATTTGTTTAAAAAAATAATAACGAAACAAAGGCTTGCTGTTTAATAGCCTA 179
consensus_1532#1      AGTACAGAAATTTGTTGTAAAAAACGATAACGAGACAAAGGCTTGCCGTTTAATAGTC-- 101
                      *******  *******  ******  ******* ************ ********* *  

consensus_1532#0      CATTAATTAAAATTATATCATTCATTACTATATGTTATGGTTAAAATTATTTCTTTCTAT 239
consensus_1532#1      -ATTG-TTAAAACTATATCATTGTTTACTATATGTTTTGGTTCAAATTAATTCTTTCTAT 159
                       ***  ****** *********  ************ ***** ****** **********

consensus_1532#0      TTCAATTTGCCAATCAATAGCTTCCTGTTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCT 299
consensus_1532#1      TTCAATTTGTCAATCAATAGCTTAAAATTTTAGCTCGTGTGTTGTTTTCCAATTTGCTCT 219
                      ********* *************    *********************************

consensus_1532#0      ACCTTCTTAGGCAATCGTCAAACTGATAAAGCGATAAGCAGAA-GATAAGAAATTCGTAC 358
consensus_1532#1      ACCTTCTTAGGCAATCGACAAACTGATAAAGCGATAAGCAAAACGATAAGAAAATCGTAC 279
                      ***************** ********************** ** ********* ******

consensus_1532#0      AGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCT 418
consensus_1532#1      AGACTTTAAATCAAAGATGCAACACAAAACCATTCAAAGCGGTGGTTTTTTAAGATAGCT 339
                      ************************************************************

consensus_1532#0      AATACAATATTTAATGTGGTAATTTGATGAGGTGAAAGGTACCCCGG-TACCGGGGTATG 477
consensus_1532#1      AATACAATATTTAATGTGGTAATTTGACGAGGTGAAAGGTACCCCGGGTACCGGGGTATG 399
                      *************************** ******************* ************

consensus_1532#0      AGCAGTAGCAAATGGCACAGCATTAACAAACAACAAAGGCAGAGAACCTCCTTCCGCCAA 537
consensus_1532#1      AGCAGTAGCAAATGGCACAGCATTAAACGAGAACAAAGGCAAAGAACCTCCTTCCGCCAA 459
                      **************************   * ********** ******************

consensus_1532#0      AAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACTATTTTTGCCAAAAAATATAA 597
consensus_1532#1      AAACAAATGCTTCTAGTTCACTATCGTCAAAAATAGTACCATTTTTGCCAAAAAATATAA 519
                      *************************************** ********************

consensus_1532#0      AGCAAAACTGCATCCTCCC-----CCCTCATGTGACCATGGTACTGTTTGTGGTAATGG- 651
consensus_1532#1      AGCAAAACTGCATCCTCCCGCCCCCCCTCATGTGACCATGATACTGTTTGTGGTAATGGT 579
                      *******************     **************** ****************** 

consensus_1532#0      GTGTTTTTAGGTTCTGTTTCGTGCAAAACGCGCTGCATTCAC-------- 693
consensus_1532#1      GAGTTTTTAGGTTCTGTTTCGTGCAAATAGCGCTGCATACACAATAACTG 629
                      * *************************  ********* ***        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)