These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence [AATCCCCCGAGGTTTANTGTCNCGGTAAAGGGCCANCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGTAGTTTTAGGATTTTTTATTACACAGATGTCCAAGTGATCCAACCCAAACGTCCAGCATGGTGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACGCGCAGGCACAGCCATCTTCTGGCGCAGGCCCTCTACCTGGTGCGATCCGGACTCGTTCAACACGACGCGGGAGTGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATGAGTGACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGATCATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATACTGATACACGGGTACGCCGGCTGGTGATGATACGCTACCGATTGCCGTTCTGCGAGATGCTTACATCAATCATGGCTGGTTACAACGTGTTCCTTGTCGATTGGGGCGCCCTCTGTCAGCCACCGTGCTATGTGGCGGCGGTGTACAATATACGGCCGGTGGCAACATGTCTTGGCGCCAGAGCTTGATGCACGTTAAGAGACCCTTGGATTGCCCGGTGGGAGATGACGCACCCTGCGTGGGACAACTCGCTCGGGGGCACAATAATCTGGGACTAATGGCAACTATCTCAAACTTCCGAATTGNNGCGAATTATTACACCGGATCCACCGCGGCCCCTATAAACGGGTGGACGTAACAACTTGATCCGGGAGCAGTTTTTGCAGGTCT] [+] EMBL AL932508 [AATCCCCCGAGGTTTANTGTCNCGGTAAAGGGCCANCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGTAGTTTTAGGATTTTTTATTACACAGATGTCCAAGTGATCCAACCCAAACGTCCAGCATGGTGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACGCGCAGGCACAGCCATCTTCTGGCGCAGGCCCTCTACCTGGTGCGATCCGGACTCGTTCAACACGACGCGGGAGTGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATGAGTGACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGATCATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATACTGATACACGGGTACGCCGGCTGGTGATGATACGCTACCGATTGCCGTTCTGCGAGATGCTTACATCAATCATGGCTGGTTACAACGTGTTCCTTGTCGATTGGGGCGCCCTCTGTCAGCCACCGTGCTATGTGGCGGCGGTGTACAATATACGGCCGGTGGCAACATGTCTTGGCGCCAGAGCTTGATGCACGTTAAGAGACCCTTGGATTGCCCGGTGGGAGATGACGCACCCTGCGTGGGACAACTCGCTCGGGGGCACAATAATCTGGGACTAATGGCAACTATCTCAAACTTCCGAATTGNNGCGAATTATTACACCGGATCCACCGCGGCCCCTATAAACGGGTGGACGTAACAACTTGATCCGGGAGCAGTTTTTGCAGGTCT] consensusID : consensus_1547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [AGAATCCCCACGAGGTTCAGCACGGACCTGGTGGTGCCTGGTGGTCAGTCATGTCGTCTGTTGGCAGGTGTCGGGTAAAGGGCCAGCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGTAGTTTTAGGATTTTTTATTACACAGTGTCCAAGTGATCCAACCCAAACGTCCAGCATGGTGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACGCGCAGGCACAGCATCTTCTGGCGCAGGCCCTCTACCTGGGCGATCCGGACTCGTTCAACACGACGCGGGAGGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATGAGGACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGATCATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATACTGATACACGGGTACGCCGGCGGTGATGATACGCTACCGATTGCCGTTCTGC] [+] EMBL AL692689 [AGAATCCCCACGAGGTTCAGCACGGACCTGGTGGTGCCTGGTGGTCAGTCATGTCGTCTGTTGGCAGGTGTCGGGTAAAGGGCCAGCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGTAGTTTTAGGATTTTTTATTACACAGTGTCCAAGTGATCCAACCCAAACGTCCAGCATGGTGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACGCGCAGGCACAGCATCTTCTGGCGCAGGCCCTCTACCTGGGCGATCCGGACTCGTTCAACACGACGCGGGAGGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATGAGGACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGATCATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATACTGATACACGGGTACGCCGGCGGTGATGATACGCTACCGATTGCCGTTCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1547#0 ---------------------------------------------------AATCCCCCG 9 consensus_1547#1 AGAATCCCCACGAGGTTCAGCACGGACCTGGTGGTGCCTGGTGGTCAGTCATGTCGTCTG 60 ** * * consensus_1547#0 AGGTTTANTGTCNCGGTAAAGGGCCANCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGT 69 consensus_1547#1 TTGGCAGGTGTCG-GGTAAAGGGCCAGCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGT 119 * **** ************ ********************************* consensus_1547#0 AGTTTTAGGATTTTTTATTACACAGATGTCCAAGTGATCCAACCCAAACGTCCAGCATGG 129 consensus_1547#1 AGTTTTAGGATTTTTTATTACACAG-TGTCCAAGTGATCCAACCCAAACGTCCAGCATGG 178 ************************* ********************************** consensus_1547#0 TGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACG 189 consensus_1547#1 TGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACG 238 ************************************************************ consensus_1547#0 CGCAGGCACAGCCATCTTCTGGCGCAGGCCCTCTACCTGGTGCGATCCGGACTCGTTCAA 249 consensus_1547#1 CGCAGGCACAGC-ATCTTCTGGCGCAGGCCCTCTACCTGG-GCGATCCGGACTCGTTCAA 296 ************ *************************** ******************* consensus_1547#0 CACGACGCGGGAGTGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATG 309 consensus_1547#1 CACGACGCGGGAG-GACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATG 355 ************* ********************************************** consensus_1547#0 AGTGACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGAT 369 consensus_1547#1 AG-GACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGAT 414 ** ********************************************************* consensus_1547#0 CATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATA 429 consensus_1547#1 CATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATA 474 ************************************************************ consensus_1547#0 CTGATACACGGGTACGCCGGCTGGTGATGATACGCTACCGATTGCCGTTCTGCGAGATGC 489 consensus_1547#1 CTGATACACGGGTACGCCGGC-GGTGATGATACGCTACCGATTGCCGTTCTGC------- 526 ********************* ******************************* consensus_1547#0 TTACATCAATCATGGCTGGTTACAACGTGTTCCTTGTCGATTGGGGCGCCCTCTGTCAGC 549 consensus_1547#1 ------------------------------------------------------------ consensus_1547#0 CACCGTGCTATGTGGCGGCGGTGTACAATATACGGCCGGTGGCAACATGTCTTGGCGCCA 609 consensus_1547#1 ------------------------------------------------------------ consensus_1547#0 GAGCTTGATGCACGTTAAGAGACCCTTGGATTGCCCGGTGGGAGATGACGCACCCTGCGT 669 consensus_1547#1 ------------------------------------------------------------ consensus_1547#0 GGGACAACTCGCTCGGGGGCACAATAATCTGGGACTAATGGCAACTATCTCAAACTTCCG 729 consensus_1547#1 ------------------------------------------------------------ consensus_1547#0 AATTGNNGCGAATTATTACACCGGATCCACCGCGGCCCCTATAAACGGGTGGACGTAACA 789 consensus_1547#1 ------------------------------------------------------------ consensus_1547#0 ACTTGATCCGGGAGCAGTTTTTGCAGGTCT 819 consensus_1547#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||