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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1262 fasta sequence
[GCAGATNCCGNGGTTAATAGGGAACAGAACAAAAAACCCAGTTGCTTAAAGTATCTTACTCCTGCAAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACGATGTGTGTTCAGCTTTTAGTAGCATNTCGGAGAAGTGGAGGACACAGCAGCACGAAGCAGAAGACAGGAACCGAGAAGTGGTAGAAGATTAGAATACCAAGCCCTACCACAAAACCCACTACTATCTGCAGGAGCTATTTGCGCGGGTCCCAGACNGGGAGAGCATGATTCAGTAAAGCANANAACGNTATACTANTCATTTNACGATGTAACAACTCNTAATNGTACCCCTATANNAGGGACCTAATACCCCANAATACAAGACAAAACAAGGGGAATCATGGTAAGGNACGGGCCATTGATTCCCTTAGGCTCCAATTTACACGAACACCAAGGAACACACACTTAAATTAACCAGCANACCACCCGAAACACGCCTCANCCANACACAACCCACAGCAGCATTGGCAACTCAAAAAATTGANCCACTAGCACTTATTNCCNACAAGTTAACAAAAACGGTAGGTCACGTCGGGTCTAGGAAGAGANCCGAAAAAGGNTGGGAGCAAACGGGGANTTCCGGCACTTAGGCACGGCGNGTNGGTATGGTAAACGGTAACGACCACAGNTTAGACACNAAAGCTTTACACCCNAAGNTANCGTTGGTTCTCACCCGTACTGAGGNAAACGNCAGNGGAGCAATTAGCCCAGTATCGGGTTCATTNTTCGCAAGAGATAACTNTAGAAGTCACAGNNCNGTATATGAGGCGAGTTAAAGAGAGTAAGCAANTCTTCCTCCGCTTAACCCNTTGGTCACAATTNATTGACATATGGGGNTGACATAGGGTANTAGACCCGGNATAAACGNNCANGGGGNGAACCCCCAAATNCTAANGCCANTANAAGGGGGATGTANCCCCAAACAAGAAACCAACAACNAGCAAGACCAAACACAATGTTAACGTCACAGANACAATGCATAACANNCANAATCCCGNTCGTGNGTGGTGACAACTTGGTTGGTTAGTGTACGACAGACACGGGTTATTTCCATNCGGCTTNAANCTGGNTCGATCACGNANACTATTTTGTGACCGGANAGNCATTAATAACGTCACTATACTATTANTAACCTANNTGTAGGGCTAAAATGGCATAACANTCTGCNAACTANTNAGNTTTNTTAGCGGNTNAGAACGCNA]
[+] EMBL AL692713 [GCAGATNCCGNGGTTAATAGGGAACAGAACAAAAAACCCAGTTGCTTAAAGTATCTTACTCCTGCAAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACGATGTGTGTTCAGCTTTTAGTAGCATNTCGGAGAAGTGGAGGACACAGCAGCACGAAGCAGAAGACAGGAACCGAGAAGTGGTAGAAGATTAGAATACCAAGCCCTACCACAAAACCCACTACTATCTGCAGGAGCTATTTGCGCGGGTCCCAGACNGGGAGAGCATGATTCAGTAAAGCANANAACGNTATACTANTCATTTNACGATGTAACAACTCNTAATNGTACCCCTATANNAGGGACCTAATACCCCANAATACAAGACAAAACAAGGGGAATCATGGTAAGGNACGGGCCATTGATTCCCTTAGGCTCCAATTTACACGAACACCAAGGAACACACACTTAAATTAACCAGCANACCACCCGAAACACGCCTCANCCANACACAACCCACAGCAGCATTGGCAACTCAAAAAATTGANCCACTAGCACTTATTNCCNACAAGTTAACAAAAACGGTAGGTCACGTCGGGTCTAGGAAGAGANCCGAAAAAGGNTGGGAGCAAACGGGGANTTCCGGCACTTAGGCACGGCGNGTNGGTATGGTAAACGGTAACGACCACAGNTTAGACACNAAAGCTTTACACCCNAAGNTANCGTTGGTTCTCACCCGTACTGAGGNAAACGNCAGNGGAGCAATTAGCCCAGTATCGGGTTCATTNTTCGCAAGAGATAACTNTAGAAGTCACAGNNCNGTATATGAGGCGAGTTAAAGAGAGTAAGCAANTCTTCCTCCGCTTAACCCNTTGGTCACAATTNATTGACATATGGGGNTGACATAGGGTANTAGACCCGGNATAAACGNNCANGGGGNGAACCCCCAAATNCTAANGCCANTANAAGGGGGATGTANCCCCAAACAAGAAACCAACAACNAGCAAGACCAAACACAATGTTAACGTCACAGANACAATGCATAACANNCANAATCCCGNTCGTGNGTGGTGACAACTTGGTTGGTTAGTGTACGACAGACACGGGTTATTTCCATNCGGCTTNAANCTGGNTCGATCACGNANACTATTTTGTGACCGGANAGNCATTAATAACGTCACTATACTATTANTAACCTANNTGTAGGGCTAAAATGGCATAACANTCTGCNAACTANTNAGNTTTNTTAGCGGNTNAGAACGCNA]
consensusID : consensus_1549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[CCGGTTGCTAAAGTAACTTACTCCTGAAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACGATGTGTGTTAGCTTTTAGTAGCATTCGGAGAAGGGAGGACACAGCAGCACGAAGCAGAAGAAGGAACCGAAAGTGGTAGAAGATTAGAATCCACCCCTCCACAAACCCCCTCTTTGCAGGACTTTTGCCGCTCCCAGCAGGAGGAATGATTAGAAACAAAACGATATATTTTTCGATGTAAACTTTTTGTCCCCTTTTAGCCTATCCCAATCAAAAAACAGGATTGTTGACGGCATGATCCTGCTCATTCACACACAGACACACATAATACACACACAGAAAGCTACAGAAACAACACATGAACTAAAATGAAATGCCTTTTCAAAGTACAAACGTGTTTGTTGAAGCGAAGTGGAAAGGATCGATGGAGGTGTGTAGTAGAAGTGAAAGTTCCGAGTAGTGTTCCGTGGGAGGGGGGCATGCGTTGTATTTGAAGTAGTGAGTCGTCGTTTTGCGTAGGTTTATCTCTCGTACCTTGTACATATGATTTGGTGCTGGTTTGCCCGTAACGGAGGGAACCATCTAGCTAGGGTGACCAAAAACAAAAAAACACAAAATCTCTTCTCGTGTGTTTGTGTGCGTGTCTGTTACCTGTCATTAGTGTAGTGGATGTGGAATAGATTAA]
[+] EMBL BM623250 [CCGGTTGCTAAAGTAACTTACTCCTGAAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACGATGTGTGTTAGCTTTTAGTAGCATTCGGAGAAGGGAGGACACAGCAGCACGAAGCAGAAGAAGGAACCGAAAGTGGTAGAAGATTAGAATCCACCCCTCCACAAACCCCCTCTTTGCAGGACTTTTGCCGCTCCCAGCAGGAGGAATGATTAGAAACAAAACGATATATTTTTCGATGTAAACTTTTTGTCCCCTTTTAGCCTATCCCAATCAAAAAACAGGATTGTTGACGGCATGATCCTGCTCATTCACACACAGACACACATAATACACACACAGAAAGCTACAGAAACAACACATGAACTAAAATGAAATGCCTTTTCAAAGTACAAACGTGTTTGTTGAAGCGAAGTGGAAAGGATCGATGGAGGTGTGTAGTAGAAGTGAAAGTTCCGAGTAGTGTTCCGTGGGAGGGGGGCATGCGTTGTATTTGAAGTAGTGAGTCGTCGTTTTGCGTAGGTTTATCTCTCGTACCTTGTACATATGATTTGGTGCTGGTTTGCCCGTAACGGAGGGAACCATCTAGCTAGGGTGACCAAAAACAAAAAAACACAAAATCTCTTCTCGTGTGTTTGTGTGCGTGTCTGTTACCTGTCATTAGTGTAGTGGATGTGGAATAGATTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1549#0 GCAGATNCCGNGGTTAATAGGGAACAGAACAAAAAACCCAGTTGCTTAAAGTATCTTACT 60
consensus_1549#1 -------------------------------------CCGGTTGCT-AAAGTAACTTACT 22
** ****** ****** ******
consensus_1549#0 CCTGCAAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACG 120
consensus_1549#1 CCTG-AAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACG 81
**** *******************************************************
consensus_1549#0 ATGTGTGTTCAGCTTTTAGTAGCATNTCGGAGAAGTGGAGGACACAGCAGCACGAAGCAG 180
consensus_1549#1 ATGTGTGTT-AGCTTTTAGTAGCATT-CGGAGAAG-GGAGGACACAGCAGCACGAAGCAG 138
********* *************** ******** ************************
consensus_1549#0 AAGACAGGAACCGAGAAGTGGTAGAAGATTAGAATACCAAGCCCTACCACAAAACCCACT 240
consensus_1549#1 AAGA-AGGAACCGA-AAGTGGTAGAAGATTAGAATCC---ACCCCTCCACAAACCCC--- 190
**** ********* ******************** * *** ******* ***
consensus_1549#0 ACTATCTGCAGGAGCTATTTGCGCGGGTCCCAGACNGGGAGAGCATGATTCAGTAAAGCA 300
consensus_1549#1 -CTCTTTGCAGGA----CTTTTGCCGCTCCCAG-CAGGAGGA--ATGATT-----AGAAA 237
** * ******* ** ** * ****** * ** ** ****** * *
consensus_1549#0 NANAACGNTATACTANTCATTTNACGATGTAACAACTCNTAATNGTACCCCTATANNAGG 360
consensus_1549#1 CAAAACGATATA-------TTTTTCGATGTAA--ACTTTT---TGTCCCCTTTTAGCC-- 283
* **** **** *** ******** *** * ** *** * **
consensus_1549#0 GACCTAATACCCCANAATACAAGACAAAACAAGGGGAATCATGGTAAGGNACGGGCCATT 420
consensus_1549#1 -------TATCCCAA---TCAA---AAAACAGGATTGTTGACGGCATGATCCTGCTCATT 330
** **** *** ****** * * * ** * * * * ****
consensus_1549#0 GATTCCCTTAGGCTCCAATTTACACGAACACCAAGGAACACACACTTAAATTAACCAGCA 480
consensus_1549#1 CACACAC---AGACACACATAATACACACACAGAAAGCTACA-----GAAACAACACATG 382
* * * * ** * * ** **** * *** ** ***
consensus_1549#0 NACCACCCGAAACACGCCTCANCCANACACAACCCACAGCAGCATTGGCAACTCAAAAAA 540
consensus_1549#1 AACTAAAATGAA-ATGCCTTTTCAAAGTACAAAC----GTGTTTGTTGAAGCGAAGTGGA 437
** * ** * **** * * **** * * * * * * * *
consensus_1549#0 TTGANCCACTAGCACTTATTNCCNACAAGTTAACAAAAACGGTAGGTCACGTCGGGTCTA 600
consensus_1549#1 AAGGATCGATGG-AGGTGTGTAGTAGAAGT----GAAAGTTCCGAGTAGTGTTCCG--TG 490
* * * * * * * * **** *** ** ** * *
consensus_1549#0 GGAAGAGANCCGAAAAAGGNTGGGAGCAAACGGGGANTTCCGGCACTTAGGCACGGCGNG 660
consensus_1549#1 GGAGGGGGGCATGCGTTGTATTTGAAGTAGTGAGTCGTCGTTTTGCGTAGGTTTATCTCT 550
*** * * * * * ** * * * * * **** *
consensus_1549#0 TNGGTATGGTAAACGGTAACGACCACAGNTTAGACACNAAAGCTTTACACCCNAAGNTAN 720
consensus_1549#1 CGTACCTTGTACATATGATTTGGTGCTGGTTTGCCCGTAACG----------GAGGGAAC 600
* *** * * * * ** * * ** * * * *
consensus_1549#0 CGTTGGTTCTCACCCGTACTGAGGNAAACGNCAGNGGAGCAATTAGCCCAGTATCGGGTT 780
consensus_1549#1 CAT-----CTAGC---TAGGGTGACCAAAAACAAAAAAACACAAAATCTCTTCTCGTGTG 652
* * ** * ** * * ** ** * ** * * * *** **
consensus_1549#0 CAT-TNTTCGCAAGAGATAACTNTAGAAGTCACAGNNCNGTATATGAGGCGAGTTAAAGA 839
consensus_1549#1 TTTGTGTGCGTGTCTGTTACCTGTC---ATTAGTGTAGTGGATGTGGAATAGATTAA--- 706
* * * ** * ** ** * * * * * ** ** ****
consensus_1549#0 GAGTAAGCAANTCTTCCTCCGCTTAACCCNTTGGTCACAATTNATTGACATATGGGGNTG 899
consensus_1549#1 ------------------------------------------------------------
consensus_1549#0 ACATAGGGTANTAGACCCGGNATAAACGNNCANGGGGNGAACCCCCAAATNCTAANGCCA 959
consensus_1549#1 ------------------------------------------------------------
consensus_1549#0 NTANAAGGGGGATGTANCCCCAAACAAGAAACCAACAACNAGCAAGACCAAACACAATGT 1019
consensus_1549#1 ------------------------------------------------------------
consensus_1549#0 TAACGTCACAGANACAATGCATAACANNCANAATCCCGNTCGTGNGTGGTGACAACTTGG 1079
consensus_1549#1 ------------------------------------------------------------
consensus_1549#0 TTGGTTAGTGTACGACAGACACGGGTTATTTCCATNCGGCTTNAANCTGGNTCGATCACG 1139
consensus_1549#1 ------------------------------------------------------------
consensus_1549#0 NANACTATTTTGTGACCGGANAGNCATTAATAACGTCACTATACTATTANTAACCTANNT 1199
consensus_1549#1 ------------------------------------------------------------
consensus_1549#0 GTAGGGCTAAAATGGCATAACANTCTGCNAACTANTNAGNTTTNTTAGCGGNTNAGAACG 1259
consensus_1549#1 ------------------------------------------------------------
consensus_1549#0 CNA 1262
consensus_1549#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||