These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [AAGGAAACTACAACACTTCCACAGCTATCAACTGTTTCGGACTCGAATTCAAAGCGGAAAAACTGAACTCAATTCATCCCCGGCTGTGCGATTACACCGGTCTGTACTACTGTCCCGCGTGCCACTGGAACGATACGAGCATCATACCGGCACGCATCACCAACAACTGGGACTTTGTGCCGCGCAAGGTGTGCCGTGCGTCGCGGCAACAGATCAACCTGCTGCTGGCCAAACCCGTCATCCGGCTGGAGGAGAAGAATCCGCGCCTCTTCACCTTCATTCCCCAGCTGGCCGAGGTGAAGCGGGCGCGCGTGCAGCTCGGTGAAATGAAGCGATACCTCATCGCGTGCCGGCTGGCCGACGAGACTAGGCTCGTGGTGAAGCAAATCGGCAAACGGCGCCACCTGATGGAAATCGATCGAGCTGTACA] [+] EMBL BM621039 [AAGGAAACTACAACACTTCCACAGCTATCAACTGTTTCGGACTCGAATTCAAAGCGGAAAAACTGAACTCAATTCATCCCCGGCTGTGCGATTACACCGGTCTGTACTACTGTCCCGCGTGCCACTGGAACGATACGAGCATCATACCGGCACGCATCACCAACAACTGGGACTTTGTGCCGCGCAAGGTGTGCCGTGCGTCGCGGCAACAGATCAACCTGCTGCTGGCCAAACCCGTCATCCGGCTGGAGGAGAAGAATCCGCGCCTCTTCACCTTCATTCCCCAGCTGGCCGAGGTGAAGCGGGCGCGCGTGCAGCTCGGTGAAATGAAGCGATACCTCATCGCGTGCCGGCTGGCCGACGAGACTAGGCTCGTGGTGAAGCAAATCGGCAAACGGCGCCACCTGATGGAAATCGATCGAGCTGTACA] consensusID : consensus_1555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 150 fasta sequence [AGACACTTCCACGTCGATCAACTGTTTCGGGACTCGAATTCAAAGCGGAAAAACTGAACTCAATTCAGCCCCCGGCTGTGCGAACTACACCGGTCTGTACCTAACTGTCCCGCGTGCCACTGGGAACGATAACGAGCATTCATACCGGCA] [+] EMBL AL692734 [AGACACTTCCACGTCGATCAACTGTTTCGGGACTCGAATTCAAAGCGGAAAAACTGAACTCAATTCAGCCCCCGGCTGTGCGAACTACACCGGTCTGTACCTAACTGTCCCGCGTGCCACTGGGAACGATAACGAGCATTCATACCGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1555#0 AAGGAAACTACAACACTTCCACAGCTATCAACTGTTTCGG-ACTCGAATTCAAAGCGGAA 59 consensus_1555#1 ----------AGACACTTCCACGTCGATCAACTGTTTCGGGACTCGAATTCAAAGCGGAA 50 ********** * ************** ******************* consensus_1555#0 AAACTGAACTCAATTCA-TCCCCGGCTGTGCGA-TTACACCGGTCTGTACT--ACTGTCC 115 consensus_1555#1 AAACTGAACTCAATTCAGCCCCCGGCTGTGCGAACTACACCGGTCTGTACCTAACTGTCC 110 ***************** ************** *************** ******* consensus_1555#0 CGCGTGCCACTGG-AACGATA-CGAGCAT-CATACCGGCACGCATCACCAACAACTGGGA 172 consensus_1555#1 CGCGTGCCACTGGGAACGATAACGAGCATTCATACCGGCA-------------------- 150 ************* ******* ******* ********** consensus_1555#0 CTTTGTGCCGCGCAAGGTGTGCCGTGCGTCGCGGCAACAGATCAACCTGCTGCTGGCCAA 232 consensus_1555#1 ------------------------------------------------------------ consensus_1555#0 ACCCGTCATCCGGCTGGAGGAGAAGAATCCGCGCCTCTTCACCTTCATTCCCCAGCTGGC 292 consensus_1555#1 ------------------------------------------------------------ consensus_1555#0 CGAGGTGAAGCGGGCGCGCGTGCAGCTCGGTGAAATGAAGCGATACCTCATCGCGTGCCG 352 consensus_1555#1 ------------------------------------------------------------ consensus_1555#0 GCTGGCCGACGAGACTAGGCTCGTGGTGAAGCAAATCGGCAAACGGCGCCACCTGATGGA 412 consensus_1555#1 ------------------------------------------------------------ consensus_1555#0 AATCGATCGAGCTGTACA 430 consensus_1555#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||