These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [GACCCACGCGTCCGGGGACAGCAACAGCCCCACAAACCGATCAACATTGGCAAGATGAACGATGTCAATCTGGATGGGTTAAAGGTATCGGAAGACGATGAAACTCCGTAGCTCGCACGGCTCGACCAGTCTCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCGACTTGACTGGACGACTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAATGGAACAGGATATAATCGTCCCAACATTATTGCCACTTGGGCCATTGTATTACCCAAGAAGTCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATGCGAACGACACTTAGGTTCAGTCGTAAACTCGTAATACTCTCAGATACTGTAGCAGAGACCTCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAACCACGCAAACGATGATTCCTCATCAAAATTTACTTCGATTTTCTATTTCCTTACTACCCAGCAATATGGTGTAAACTCTCCAACAAAACATATAGTACAACAGCTCGTCCCCAGTTTTAGCGAGCTACAGATCATAGCTTATTTATATCCCTTGGAACAGAAAAGTATTGCCAATACGCAGTTAGCTCACAGATCATTCTCGTT] [+] EMBL BM649061 [GACCCACGCGTCCGGGGACAGCAACAGCCCCACAAACCGATCAACATTGGCAAGATGAACGATGTCAATCTGGATGGGTTAAAGGTATCGGAAGACGATGAAACTCCGTAGCTCGCACGGCTCGACCAGTCTCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCGACTTGACTGGACGACTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAATGGAACAGGATATAATCGTCCCAACATTATTGCCACTTGGGCCATTGTATTACCCAAGAAGTCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATGCGAACGACACTTAGGTTCAGTCGTAAACTCGTAATACTCTCAGATACTGTAGCAGAGACCTCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAACCACGCAAACGATGATTCCTCATCAAAATTTACTTCGATTTTCTATTTCCTTACTACCCAGCAATATGGTGTAAACTCTCCAACAAAACATATAGTACAACAGCTCGTCCCCAGTTTTAGCGAGCTACAGATCATAGCTTATTTATATCCCTTGGAACAGAAAAGTATTGCCAATACGCAGTTAGCTCACAGATCATTCTCGTT] consensusID : consensus_1557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [GCGTGTGGAAGAGCTAAAGCACGAGCTGGCCTCCGCGGAGGATGAGCTCGATGCCGCCTGCAATCACGTGCGTCGGCTGCAGCGCACCAACGAGGAACTGAGCGGACAGACTGAAGGCTTGCAGGTGCAGATACAGCATCTTCAGACGAGACTCCGTAGCTCGCACGGCTCGACCAGTCTCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCAACTTGACTGGACTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAATGGTACAGGATGGGCCATTGTATTACCCAAGAAGTCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATGCGAACGACACTTAGGTTTAGTCGTAAACTGGTAATACTCTCAGATACTGTAGCAGAGACCTCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAATCACGCAAACGATGATTCCTCATCAA] [+] EMBL BX602357 [GCGTGTGGAAGAGCTAAAGCACGAGCTGGCCTCCGCGGAGGATGAGCTCGATGCCGCCTGCAATCACGTGCGTCGGCTGCAGCGCACCAACGAGGAACTGAGCGGACAGACTGAAGGCTTGCAGGTGCAGATACAGCATCTTCAGACGAGACTCCGTAGCTCGCACGGCTCGACCAGTCTCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCAACTTGACTGGACTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAATGGTACAGGATGGGCCATTGTATTACCCAAGAAGTCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATGCGAACGACACTTAGGTTTAGTCGTAAACTGGTAATACTCTCAGATACTGTAGCAGAGACCTCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAATCACGCAAACGATGATTCCTCATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1557#0 ------------------------------------GACCCACGCGTCCGGGGACAGCAA 24 consensus_1557#1 GCGTGTGGAAGAGCTAAAGCACGAGCTGGCCTCCGCGGAGGATGAGCTCGATGCCGCCTG 60 * * * * ** * * * consensus_1557#0 CAGCCCCACAAACCGAT--CAACATTGGCAAGATGAACGATGT---CAATCTGGATGGGT 79 consensus_1557#1 CAATCACGTGCGTCGGCTGCAGCGCACCAACGAGGAACTGAGCGGACAGACTGAA-GGCT 119 ** * * ** ** * * ** **** * ** *** * ** * consensus_1557#0 TAAAGGTATCGGAAGAC--------GATGAAACTCCGTAGCTCGCACGGCTCGACCAGTC 131 consensus_1557#1 TGCAGGTGCAGATACAGCATCTTCAGACGAGACTCCGTAGCTCGCACGGCTCGACCAGTC 179 * **** * * * ** ** ***************************** consensus_1557#0 TCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCGACTTGACTGGA 191 consensus_1557#1 TCCTTTCGGCCAACGAAGATAATAGCGATAATGAATGATTTGTTAAGCAACTTGACTGGA 239 ************************************************ *********** consensus_1557#0 CGACTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAAT 251 consensus_1557#1 ---CTGGAGGACCGGTGGGAATACAACGACACACATACTCTCAGGCAAGAACGACACAAT 296 ********************************************************* consensus_1557#0 GGAACAGGATATAATCGTCCCAACATTATTGCCACTTGGGCCATTGTATTACCCAAGAAG 311 consensus_1557#1 GGTACAGGAT---------------------------GGGCCATTGTATTACCCAAGAAG 329 ** ******* *********************** consensus_1557#0 TCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATG 371 consensus_1557#1 TCTTACATACATCAACCACTACTGGTATGCTCTCTAAATGAAAACCCAATTAAGCAGATG 389 ************************************************************ consensus_1557#0 CGAACGACACTTAGGTTCAGTCGTAAACTCGTAATACTCTCAGATACTGTAGCAGAGACC 431 consensus_1557#1 CGAACGACACTTAGGTTTAGTCGTAAACTGGTAATACTCTCAGATACTGTAGCAGAGACC 449 ***************** *********** ****************************** consensus_1557#0 TCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAACCACGCAAACGATGATTCCTC 491 consensus_1557#1 TCAGTACTTATGCGGTAGCGATAACGAAACAAGTATTAATCACGCAAACGATGATTCCTC 509 *************************************** ******************** consensus_1557#0 ATCAAAATTTACTTCGATTTTCTATTTCCTTACTACCCAGCAATATGGTGTAAACTCTCC 551 consensus_1557#1 ATCAA------------------------------------------------------- 514 ***** consensus_1557#0 AACAAAACATATAGTACAACAGCTCGTCCCCAGTTTTAGCGAGCTACAGATCATAGCTTA 611 consensus_1557#1 ------------------------------------------------------------ consensus_1557#0 TTTATATCCCTTGGAACAGAAAAGTATTGCCAATACGCAGTTAGCTCACAGATCATTCTC 671 consensus_1557#1 ------------------------------------------------------------ consensus_1557#0 GTT 674 consensus_1557#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||