These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [TGGCGAATGGATGAAGGTAACGGTACGGCGCAAACCATACGCTAACCGATTCCTGTTGGAAACTAATATCGAGGGACACGTGTCGTGCTTCAACGCCGTTATTTCGGGAGAAAATATTTCCCTTTTCGATGAGAACGGCATGATTGGTGGAGAAATTGTTCAGCCCCGTTTTCTCGTTACCGAAAGCTCGATGGGTGGAGTCGATGCATCCAGTGTAACTGCCCCAATGCCCGGAGTGCTCGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGTGCTGATTGCAATGAAAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAATACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCGTTCGAGTGATGGAACGTTAAGAACACAACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTGCATTTATTAGAAATTAAGGCAATTTTGTAGATTTTAGAGAAAAATATCATTGAAATGA] [+] EMBL BX622971 [TGGCGAATGGATGAAGGTAACGGTACGGCGCAAACCATACGCTAACCGATTCCTGTTGGAAACTAATATCGAGGGACACGTGTCGTGCTTCAACGCCGTTATTTCGGGAGAAAATATTTCCCTTTTCGATGAGAACGGCATGATTGGTGGAGAAATTGTTCAGCCCCGTTTTCTCGTTACCGAAAGCTCGATGGGTGGAGTCGATGCATCCAGTGTAACTGCCCCAATGCCCGGAGTGCTCGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGTGCTGATTGCAATGAAAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAATACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCGTTCGAGTGATGGAACGTTAAGAACACAACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTGCATTTATTAGAAATTAAGGCAATTTTGTAGATTTTAGAGAAAAATATCATTGAAATGA] consensusID : consensus_1568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [CCGCGACTACAACAGCCCCTATGCCCGGAGTGCTCGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGCGCTGATTGCAATGATAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAATACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCCTTCTAGTGATGGAACGTTAAGAACACCACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTGCATTTATTAGAAATTAAGGCAATTTTGTAGATTTT] [+] EMBL BM649200 [CCGCGACTACAACAGCCCCTATGCCCGGAGTGCTCGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGCGCTGATTGCAATGATAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAATACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCCTTCTAGTGATGGAACGTTAAGAACACCACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTGCATTTATTAGAAATTAAGGCAATTTTGTAGATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1568#0 TGGCGAATGGATGAAGGTAACGGTACGGCGCAAACCATACGCTAACCGATTCCTGTTGGA 60 consensus_1568#1 ------------------------------------------------------------ consensus_1568#0 AACTAATATCGAGGGACACGTGTCGTGCTTCAACGCCGTTATTTCGGGAGAAAATATTTC 120 consensus_1568#1 ------------------------------------------------------------ consensus_1568#0 CCTTTTCGATGAGAACGGCATGATTGGTGGAGAAATTGTTCAGCCCCGTTTTCTCGTTAC 180 consensus_1568#1 ------------------------------------------------------------ consensus_1568#0 CGAAAGCTCGATGGGTGGAGTCGATGCATCCAGTGTAACTGCCCCAATGCCCGGAGTGCT 240 consensus_1568#1 --------------------------CCGCGACTACAACAGCCCCTATGCCCGGAGTGCT 34 * * * * *** ***** ************** consensus_1568#0 CGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGTGCT 300 consensus_1568#1 CGACAAGCTGTTCGTTAAGCCGGGAGACACTGTAAAAGCTGGTACACCGGTAGCAGCGCT 94 ******************************************************** *** consensus_1568#0 GATTGCAATGAAAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAAT 360 consensus_1568#1 GATTGCAATGATAATGGAACACGTTTTAAAAGCCGCAAAGGATGGAGTTGTTAAAGCAAT 154 *********** ************************************************ consensus_1568#0 ACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCGTTCGAGTGATG 420 consensus_1568#1 ACCTAACGCTGAAGGTAGCAACGTCCGTAAAGGCGCCACATTGATTTCCTTCTAGTGATG 214 ************************************************ *** ******* consensus_1568#0 GAACGTTAAGAACACAACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTG 480 consensus_1568#1 GAACGTTAAGAACACCACGACCTTGCATTTAACCTGTTCTAAACAGTCTGACACAAAGTG 274 *************** ******************************************** consensus_1568#0 CATTTATTAGAAATTAAGGCAATTTTGTAGATTTTAGAGAAAAATATCATTGAAATGA 538 consensus_1568#1 CATTTATTAGAAATTAAGGCAATTTTGTAGATTTT----------------------- 309 *********************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||