These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [CCCCCGCAGGTTNACAATTACATTAACAATCATTCGGTGATNAGTTTGCGAAACGTCTTGCCGCACGCCTGGTACAGGCCCTTCTTGTCCGCGTCGGTATCGATCGTGGACTGATCGTTCGGCAGCGTCAGCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGATCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCGCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCTTCTGCCGCGACATGTCTCCATCGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGACGCCGTCGTCGCCGGGCAGTATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAAGCGCACAGCAAGAAACGTTACCGACAGTCTTGGTCGCCGTGAAAATGCTTCTAATGCACGGGTGAGTTGCATTATAACTACAAGCATACGTTTTTCCTTTCTTTAGTTTCAGCTAATGCCAGACGAACGATCGAATGACTGTTGCTTCGGAAAGGGACGGTCGCATTACAGATACCGACTTGGACATGATCCAGTCGGTCGGTTGCAGTTGTTCCATGGTGCTTCGGATAAGGCAACAACGGAGAAGCGCTCCGGACGCTCCGGAGAAGCTGATCGAGATCGGGAAGCGGGTA] [+] EMBL AL692866 [CCCCCGCAGGTTNACAATTACATTAACAATCATTCGGTGATNAGTTTGCGAAACGTCTTGCCGCACGCCTGGTACAGGCCCTTCTTGTCCGCGTCGGTATCGATCGTGGACTGATCGTTCGGCAGCGTCAGCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGATCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCGCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCTTCTGCCGCGACATGTCTCCATCGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGACGCCGTCGTCGCCGGGCAGTATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAAGCGCACAGCAAGAAACGTTACCGACAGTCTTGGTCGCCGTGAAAATGCTTCTAATGCACGGGTGAGTTGCATTATAACTACAAGCATACGTTTTTCCTTTCTTTAGTTTCAGCTAATGCCAGACGAACGATCGAATGACTGTTGCTTCGGAAAGGGACGGTCGCATTACAGATACCGACTTGGACATGATCCAGTCGGTCGGTTGCAGTTGTTCCATGGTGCTTCGGATAAGGCAACAACGGAGAAGCGCTCCGGACGCTCCGGAGAAGCTGATCGAGATCGGGAAGCGGGTA] consensusID : consensus_1572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [AAGAATCGCCACGAGGTGAAAGTTAAAAAGCATACAAAGCTCGCTCGCCGTTGGACGCTTGGACAATTACATTAACAATCATTCGGTGATCAGTTTGCGAAACGTCTTGCCGCACGCCTGGTACAGGCCCTTCTTGTCCGCGTCGGTATCGATACGTGGACTGATCGTTCGGCAGCGTCAGCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGATCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCGCCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCGTTCTGCCGCGACATGTCTCCATCGGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGAGCCGTCGGTCGCCGGGCAGTATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAAGCGCACAGCAAGAAACGTTACCGACAGTCTTTGTCGCCGGTGAAAATGCTTCTAATGCACGGGTGAGTTGCAGTTGATAGAGCTACGAGCATACGTNNGGAGTGTGCCTTGCTTNAGGTTTCAGCTAATGCCAGACGAACGATCGGAAATGACTGTTGCTTCGGAACGGGAGGGTCGCATTACAGGATACCCGNNTTGGACATGAGTCCAGGTCGGTCGGGNTGAA] [+] EMBL BX469189 [AAGAATCGCCACGAGGTGAAAGTTAAAAAGCATACAAAGCTCGCTCGCCGTTGGACGCTTGGACAATTACATTAACAATCATTCGGTGATCAGTTTGCGAAACGTCTTGCCGCACGCCTGGTACAGGCCCTTCTTGTCCGCGTCGGTATCGATACGTGGACTGATCGTTCGGCAGCGTCAGCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGATCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCGCCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCGTTCTGCCGCGACATGTCTCCATCGGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGAGCCGTCGGTCGCCGGGCAGTATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAAGCGCACAGCAAGAAACGTTACCGACAGTCTTTGTCGCCGGTGAAAATGCTTCTAATGCACGGGTGAGTTGCAGTTGATAGAGCTACGAGCATACGTNNGGAGTGTGCCTTGCTTNAGGTTTCAGCTAATGCCAGACGAACGATCGGAAATGACTGTTGCTTCGGAACGGGAGGGTCGCATTACAGGATACCCGNNTTGGACATGAGTCCAGGTCGGTCGGGNTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1572#0 -----------------------------------------------CCCCCGCAGGTTN 13 consensus_1572#1 AAGAATCGCCACGAGGTGAAAGTTAAAAAGCATACAAAGCTCGCTCGCCGTTGGACGCTT 60 ** * * * * consensus_1572#0 --ACAATTACATTAACAATCATTCGGTGATNAGTTTGCGAAACGTCTTGCCGCACGCCTG 71 consensus_1572#1 GGACAATTACATTAACAATCATTCGGTGATCAGTTTGCGAAACGTCTTGCCGCACGCCTG 120 **************************** ***************************** consensus_1572#0 GTACAGGCCCTTCTTGTCCGCGTCGGTATCGAT-CGTGGACTGATCGTTCGGCAGCGTCA 130 consensus_1572#1 GTACAGGCCCTTCTTGTCCGCGTCGGTATCGATACGTGGACTGATCGTTCGGCAGCGTCA 180 ********************************* ************************** consensus_1572#0 GCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGA 190 consensus_1572#1 GCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGA 240 ************************************************************ consensus_1572#0 TCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCG 250 consensus_1572#1 TCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCG 300 ************************************************************ consensus_1572#0 C-ATCCAGCACGACGTGCCGATAAACGTGTGGTACACC-TTCTGCCGCGACATGTCTCCA 308 consensus_1572#1 CCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCGTTCTGCCGCGACATGTCTCCA 360 * ************************************ ********************* consensus_1572#0 TCGG-TGGCGAGCCACGCGCTCATCCGCTATATTTAAGGACGCCGTCG-TCGCCGGGCAG 366 consensus_1572#1 TCGGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGA-GCCGTCGGTCGCCGGGCAG 419 **** *********************************** ******* *********** consensus_1572#0 TATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAA 426 consensus_1572#1 TATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAA 479 ************************************************************ consensus_1572#0 GCGCACAGCAAGAAACGTTACCGACAGTCTTGGTCGCCG-TGAAAATGCTTCTAATGCAC 485 consensus_1572#1 GCGCACAGCAAGAAACGTTACCGACAGTCTTTGTCGCCGGTGAAAATGCTTCTAATGCAC 539 ******************************* ******* ******************** consensus_1572#0 GGGTGAGTTGCATT----ATAACTACAAGCATACGTTT------TTCCTTTCTTTAG-TT 534 consensus_1572#1 GGGTGAGTTGCAGTTGATAGAGCTACGAGCATACGTNNGGAGTGTGCCTTGCTTNAGGTT 599 ************ * * * **** ********* * **** *** ** ** consensus_1572#0 TCAGCTAATGCCAGACGAACGATCG--AATGACTGTTGCTTCGGAAAGGGACGGTCGCAT 592 consensus_1572#1 TCAGCTAATGCCAGACGAACGATCGGAAATGACTGTTGCTTCGGAACGGGAGGGTCGCAT 659 ************************* ******************* **** ******** consensus_1572#0 TACAG-ATACC-GACTTGGACATGA-TCCAG-TCGGTCGGTTGCAGTTGTTCCATGGTGC 648 consensus_1572#1 TACAGGATACCCGNNTTGGACATGAGTCCAGGTCGGTCGGGNTGAA-------------- 705 ***** ***** * ********** ***** ******** * consensus_1572#0 TTCGGATAAGGCAACAACGGAGAAGCGCTCCGGACGCTCCGGAGAAGCTGATCGAGATCG 708 consensus_1572#1 ------------------------------------------------------------ consensus_1572#0 GGAAGCGGGTA 719 consensus_1572#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||