These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1575#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [CCGGCGAAGGGGAGTGTACGAGTGGCGGGGCAGCGATTGTTGGGTGGAGTAGTGTATTCCCTCGTCTCGTGTTGATGCAGAACATTTTGCTACGATTTTCGCACTAGGCGGACTGGGCAGAATCGGACGGGCTTGACGGACGGACGCAAACCCACTCCCCTCCCTCAGTCTAACGCCCATATCGGAAGTGGAAGATATCGCGCGTTCATTTCGCGTGTACAGCGAACCGTAGGTGTAAAACAACAAGAAACCGCAAAAGGCACCTCACCACTGCTGCACCATGGCATCCTTCGACGTGTACGATCGGTCGAGCTGGTACTTCGGGGCGATGTCACGCCAGGACGCAACCGATCTGCTGCTGAACGAGCGCGAAAGTGGCGTATTTCTGGTGCGCGACAGCACAACGATCGTGGGCGACTTCGTGCTGTGCGTGCGGGAAGACTCGAAAGTGAGCCACTACATCATCAACAAACTGCCATCGGGCGATGAGTGTTTCGTGTACCGGATCGGCGACCAGACCTTTGCCGACCTGCCGGATCTGCTGTCCTTCTACAAGCTGCACTATCTCGACACGACACCGCTGCGCCGGCCGATGGTGCGCCGGCTGGAGAAGGTCATTGGCAAGTTTGACTTCGACGGGAGCGATCCGGACGATCTGCCGTTCAAGAAGGGTGAGAT] [+] EMBL BM608299 [CCGGCGAAGGGGAGTGTACGAGTGGCGGGGCAGCGATTGTTGGGTGGAGTAGTGTATTCCCTCGTCTCGTGTTGATGCAGAACATTTTGCTACGATTTTCGCACTAGGCGGACTGGGCAGAATCGGACGGGCTTGACGGACGGACGCAAACCCACTCCCCTCCCTCAGTCTAACGCCCATATCGGAAGTGGAAGATATCGCGCGTTCATTTCGCGTGTACAGCGAACCGTAGGTGTAAAACAACAAGAAACCGCAAAAGGCACCTCACCACTGCTGCACCATGGCATCCTTCGACGTGTACGATCGGTCGAGCTGGTACTTCGGGGCGATGTCACGCCAGGACGCAACCGATCTGCTGCTGAACGAGCGCGAAAGTGGCGTATTTCTGGTGCGCGACAGCACAACGATCGTGGGCGACTTCGTGCTGTGCGTGCGGGAAGACTCGAAAGTGAGCCACTACATCATCAACAAACTGCCATCGGGCGATGAGTGTTTCGTGTACCGGATCGGCGACCAGACCTTTGCCGACCTGCCGGATCTGCTGTCCTTCTACAAGCTGCACTATCTCGACACGACACCGCTGCGCCGGCCGATGGTGCGCCGGCTGGAGAAGGTCATTGGCAAGTTTGACTTCGACGGGAGCGATCCGGACGATCTGCCGTTCAAGAAGGGTGAGAT] consensusID : consensus_1575#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [AGAATCGCACGAGGTTACGGGAGCGATCCGGACGATCTGCCGTTCAAGAAGGGTGAGATACTGCACATCATAAGCAAGGACGAGGAGCAATGGTGGACGGCGCGGAACGGGGCGGGCCAAACGGGCCAGATACCGGTGCCGTACGTGACGCGGTACGAGGAAAACATTATCGAGCGGCCAAACTCGGGTGGTGGTGGTGGTGGCGGTGCTGGTCCGGGCCATCATCACCATCACCATGCACATCCGGCGACCGGTGGTGGTGGGATGCATCATTCGGAGAATTCGAACATTTTCAAATCGAACCTCAACCGGCAGCTGCCAGACACTGGCACGGGTTAAGCAGGAGCGCGTCCCGAACGCGTACGACGAGACGGCCCTGAAGCTGAGACGTCGGCGGACGTTATCAAGGTGCTGTAAGACGAACATCAACGGACAGTGGGAGGGTGAGCTGAAGGGGCAAGGATTGGCCACGTGTCAGCCGTTCAGCGCACGTGGNAGGTTTCA] [+] EMBL BX469024 [AGAATCGCACGAGGTTACGGGAGCGATCCGGACGATCTGCCGTTCAAGAAGGGTGAGATACTGCACATCATAAGCAAGGACGAGGAGCAATGGTGGACGGCGCGGAACGGGGCGGGCCAAACGGGCCAGATACCGGTGCCGTACGTGACGCGGTACGAGGAAAACATTATCGAGCGGCCAAACTCGGGTGGTGGTGGTGGTGGCGGTGCTGGTCCGGGCCATCATCACCATCACCATGCACATCCGGCGACCGGTGGTGGTGGGATGCATCATTCGGAGAATTCGAACATTTTCAAATCGAACCTCAACCGGCAGCTGCCAGACACTGGCACGGGTTAAGCAGGAGCGCGTCCCGAACGCGTACGACGAGACGGCCCTGAAGCTGAGACGTCGGCGGACGTTATCAAGGTGCTGTAAGACGAACATCAACGGACAGTGGGAGGGTGAGCTGAAGGGGCAAGGATTGGCCACGTGTCAGCCGTTCAGCGCACGTGGNAGGTTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1575#0 CCGGCGAAGGGGAGTGTACGAGTGGCGGGGCAGCGATTGTTGGGTGGAGTAGTGTATTCC 60 consensus_1575#1 ------------------------------------------------------------ consensus_1575#0 CTCGTCTCGTGTTGATGCAGAACATTTTGCTACGATTTTCGCACTAGGCGGACTGGGCAG 120 consensus_1575#1 ----------------------------------------------------------AG 2 ** consensus_1575#0 AATCGGACGGGCTTGACGGACGGACGCAAACCCACTCCCCTCCCTCAGTCTAACGCCCAT 180 consensus_1575#1 AATCGCACGAGGTTACGGGAGCGATCCGGAC---------------GATCTGCCGTTCA- 46 ***** *** * ** *** ** * ** *** ** ** consensus_1575#0 ATCGGAAGTGGAAGATATCGCGCGTTCATTTCGCGTGTACAGCG-AACCGTAGGTGTAAA 239 consensus_1575#1 ---AGAAGGGTGAGATACTGCACATCATAAGCAAGGACGAGGAGCAATGGTGGACGGCGC 103 **** * ***** ** * * * * * * ** ** * * consensus_1575#0 ACAACAAGAAACCGCAAA-AGGCACCTCACCACTGCTGCACCATGGCATCCTTCGACGTG 298 consensus_1575#1 GGAACGGGGCGGGCCAAACGGGCCAGATACCGGTGCCGTAC-GTGACGCGGTACGAGGAA 162 *** * **** *** *** *** * ** ** * * *** * consensus_1575#0 TACGATCGGTCGAGCTGGTACTTCGGGGCGATGTCACGCCAGGACGCAACCGATCTGCTG 358 consensus_1575#1 AACATT--ATCGAGCGGCCAAACTCGGGTGGTGGTG-GTGGTGGCGGTGCTGGTCCGGGC 219 ** * ****** * * *** * ** * * ** * * ** * consensus_1575#0 CTGAACGAGCGCGAAAGTGGCGTATTTCTGGTGCGCGACAGCACAACGATCGTGGGCGAC 418 consensus_1575#1 C---ATCATCACCATCACCATGCACATCCGG----CGAC----CGGTGGTGGTGGGATGC 268 * * * * * * * * ** ** **** * * * ***** * consensus_1575#0 TTCGTGCTGTGCGTGCGGGAAGACTCGAAAGTGAGCCACTAC-ATCATCAACAAACTGCC 477 consensus_1575#1 ATCATTCGGAGAATTCGAACATTTTC-AAATCGAACCTCAACCGGCAGCTGCCAGACACT 327 ** * * * * * ** * ** *** ** ** * ** ** * * * * consensus_1575#0 ATCGGGCGATGAGT-GTTTCGTGTACCGGATCGG--CGACCAGACCTTTGCCGACCTGCC 534 consensus_1575#1 GGCACGGGTTAAGCAGGAGCGCGTCCCGAACGCGTACGACGAGACGGCCCTGAAGCTGAG 387 * * * * ** * ** ** *** * * **** **** * *** consensus_1575#0 GGATCTGCTGTCCTTCTACAAGCTGCACTATCTCGACACGACACCGCTGCGCCGGCCGAT 594 consensus_1575#1 ACGTCGGCGGACGTTAT-CAAGGTGCTGTAAGACGA----ACATCAACGGACAGTGGGAG 442 ** ** * * ** * **** *** ** *** *** * * * * ** consensus_1575#0 GGTGCGCCGGCTGGAGAAGGTCATTGGCAAGTTTGACTTCGACGGGAGCGATCCGGACGA 654 consensus_1575#1 GGTGAGCTGAAGGGGCAAGG--ATTGGCCACGTGTCAGCCGTTCAGCGCACGTGGNAGGT 500 **** ** * ** **** ****** * * ** * ** * * * consensus_1575#0 TCTGCCGTTCAAGAAGGGTGAGAT 678 consensus_1575#1 TTCA-------------------- 504 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||