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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence
[CGCAGAATCCCCNCGAGTTTATTGGGCCCTGACCTTTTGTAAAAAATNAGAAGCTGCGGGGAATTGAGATGTATTTAACAAGACCTTTCAAACATATTTAATTGCATTAACCAAGCTACACCTACAACTGAATAGTGCTTTGCATGCGTCCATTTGTTCCATTCTGTCATTCAACGCTTTCTTTTCGACTTTCTCATGCAGCAACGCCAACGCACAAGCATCAGCAACACAGCAACACGCAACACTTTACCCCCGAACACCATGGACCAATCTNATTCTGCTAGGGCAATTCGGCTTTGCCTAANCAGCACACTAACCAACCAAACCAAGCAACCAACTAACTAACTTAAATTACTTACTACTAACACCAACCACCACATGGCCACACAGCTTAACACTTTCACCAATTCCANATCACATTAAACCACTTCACCAGGAAGTTGGCCGGCCTATTAGNGTTGCGGTNACCGCTAGGCGCACAGGTCCAGGCATTCACCGTTATCANTTAAAAACTTCAAATCCTTATTTCCCTANCCAACCCTCTTCNGGAAAGATGGCTGGTTNCAACAGGAAGGGCATTNGGCGCTNCTCGGATGAAAATTTATACCNGGAGNTTCACATTGGGTCNTCTCTAAACTCGGGTTTTNCCCGGCTCACAGGTTGGCACAACACTTATTCCCGGNNTCNCCGGGCATCTTAAAAGACCCCCAATCCCGGAACTCGGTCGGGTCGGTTAGGTTAGAATATACCGGAAAAACCGACATCTTAANAACAACCAAGGTTGGGCCACTTTA]
[+] EMBL AL692874 [CGCAGAATCCCCNCGAGTTTATTGGGCCCTGACCTTTTGTAAAAAATNAGAAGCTGCGGGGAATTGAGATGTATTTAACAAGACCTTTCAAACATATTTAATTGCATTAACCAAGCTACACCTACAACTGAATAGTGCTTTGCATGCGTCCATTTGTTCCATTCTGTCATTCAACGCTTTCTTTTCGACTTTCTCATGCAGCAACGCCAACGCACAAGCATCAGCAACACAGCAACACGCAACACTTTACCCCCGAACACCATGGACCAATCTNATTCTGCTAGGGCAATTCGGCTTTGCCTAANCAGCACACTAACCAACCAAACCAAGCAACCAACTAACTAACTTAAATTACTTACTACTAACACCAACCACCACATGGCCACACAGCTTAACACTTTCACCAATTCCANATCACATTAAACCACTTCACCAGGAAGTTGGCCGGCCTATTAGNGTTGCGGTNACCGCTAGGCGCACAGGTCCAGGCATTCACCGTTATCANTTAAAAACTTCAAATCCTTATTTCCCTANCCAACCCTCTTCNGGAAAGATGGCTGGTTNCAACAGGAAGGGCATTNGGCGCTNCTCGGATGAAAATTTATACCNGGAGNTTCACATTGGGTCNTCTCTAAACTCGGGTTTTNCCCGGCTCACAGGTTGGCACAACACTTATTCCCGGNNTCNCCGGGCATCTTAAAAGACCCCCAATCCCGGAACTCGGTCGGGTCGGTTAGGTTAGAATATACCGGAAAAACCGACATCTTAANAACAACCAAGGTTGGGCCACTTTA]
consensusID : consensus_1576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence
[ACCTTTCAAACATATTTAATTGCATTAACCAAGCTACACCTACAACTGAATAGTGCTTTGATGCGTCATTTGTTCATTTGTATTAACGCTTTCTTTTCGACTTTCTATGCAGCAACGCAACGCACAAGATAGAAAAGAAACGAAACTTTACCCCCGAAAATGGACCATTTTTTGCTAGGAATTGTTTGCCTAAAGAACTAACCAACCAACCAACCACCACTACTAATACTACTACTACTACCACCACTGCAAAGACTTACATTACAATCAATAATAACACTACAGAGTGCGCTTAGGTGCGTACGCTAGGGAAGGTAGATACGTTTTTTAAACTCAACTCTTTTCCTACCACCTCTTAGAGTGTGTTTGAGATGCTTTGTATTTCGGTATGTTTTTATGTTCGTAGTGAAATTCGTTCGTTGACCACCGATGTGTGTGTTTTTCGAACGACTAAACAGTGCATTTC]
[+] EMBL BX618103 [ACCTTTCAAACATATTTAATTGCATTAACCAAGCTACACCTACAACTGAATAGTGCTTTGATGCGTCATTTGTTCATTTGTATTAACGCTTTCTTTTCGACTTTCTATGCAGCAACGCAACGCACAAGATAGAAAAGAAACGAAACTTTACCCCCGAAAATGGACCATTTTTTGCTAGGAATTGTTTGCCTAAAGAACTAACCAACCAACCAACCACCACTACTAATACTACTACTACTACCACCACTGCAAAGACTTACATTACAATCAATAATAACACTACAGAGTGCGCTTAGGTGCGTACGCTAGGGAAGGTAGATACGTTTTTTAAACTCAACTCTTTTCCTACCACCTCTTAGAGTGTGTTTGAGATGCTTTGTATTTCGGTATGTTTTTATGTTCGTAGTGAAATTCGTTCGTTGACCACCGATGTGTGTGTTTTTCGAACGACTAAACAGTGCATTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1576#0 CGCAGAATCCCCNCGAGTTTATTGGGCCCTGACCTTTTGTAAAAAATNAGAAGCTGCGGG 60
consensus_1576#1 ------------------------------------------------------------
consensus_1576#0 GAATTGAGATGTATTTAACAAGACCTTTCAAACATATTTAATTGCATTAACCAAGCTACA 120
consensus_1576#1 ----------------------ACCTTTCAAACATATTTAATTGCATTAACCAAGCTACA 38
**************************************
consensus_1576#0 CCTACAACTGAATAGTGCTTTGCATGCGTCCATTTGTTCCATTCTGTCATTCAACGCTTT 180
consensus_1576#1 CCTACAACTGAATAGTGCTTTG-ATGCGTC-ATTTGTTCATTTGTATTA----ACGCTTT 92
********************** ******* ******** ** * * * *******
consensus_1576#0 CTTTTCGACTTTCTCATGCAGCAACGCCAACGCACAAGCATCAGCAACACAGCAACACGC 240
consensus_1576#1 CTTTTCGACTTTCT-ATGCAGCAACGC-AACGCACAAG-----ATAGAAAAGAAACG--- 142
************** ************ ********** * * ** ***
consensus_1576#0 AACACTTTACCCCCGAACACCATGGACCAATCTNATTCTGCTAGGGCAATTCGGCTTTGC 300
consensus_1576#1 -AAACTTTACCCCCGAAAA---TGGACCATTTTT----TGCTAGG--AATTG---TTTGC 189
* ************** * ******* * * ******* **** *****
consensus_1576#0 CTAANCAGCACACTAACCAACCAAACCAAGCAACCAACTAACTAACTTAAATTACTTACT 360
consensus_1576#1 CTAAAGA----ACTAACCAACCAA-CCAACCACC--ACTA-CTAA-------TACT-ACT 233
**** * ************* **** ** * **** **** **** ***
consensus_1576#0 ACTAACACCAACCACCACATGGCCACACAGCTTAA-CACTTTCACCAATTCCANATCACA 419
consensus_1576#1 ACTACTACCA-CCACTGCAAAGACTTACATTACAATCAATAATAACACTACAGAGTGCGC 292
**** **** **** ** * * *** ** ** * * ** * * *
consensus_1576#0 TTAAACCACTTCACCAGGAAGTTGGCCGGCCTATTAGNGTTGCGGTNACCGCTAGGCGCA 479
consensus_1576#1 TTAGGTGCGTACGCTAGGGAA--GGTAGATACGTT--TTTTAAACTCAACTCTTTTCCTA 348
*** * * * *** * ** * ** ** * * * ** * *
consensus_1576#0 CAGGTCCAGGCATTCACCGTTATCANTTAAAAACTTCAAATCCTTATTTCCCTANCCAAC 539
consensus_1576#1 CCACCTC------TTAGAGT-GTGTTTGAGATGCTTTGTATTTCGGTATGTTTTT---AT 398
* * * * ** * * * * *** ** * * * *
consensus_1576#0 CCTCTTCNGGAAAGATGGCTGGTTNCAACAGGAAGGGCATTNGGCGCTNCTCGGATGAAA 599
consensus_1576#1 GTTCGTAGTGAAATTCGTTCGTTGACCACCGATG------TGTGTGTTTTTCGAACGA-- 450
** * **** * * * * ** * * * * * *** * **
consensus_1576#0 ATTTATACCNGGAGNTTCACATTGGGTCNTCTCTAAACTCGGGTTTTNCCCGGCTCACAG 659
consensus_1576#1 --CTAAACAGTGCATTTC------------------------------------------ 466
** ** * ***
consensus_1576#0 GTTGGCACAACACTTATTCCCGGNNTCNCCGGGCATCTTAAAAGACCCCCAATCCCGGAA 719
consensus_1576#1 ------------------------------------------------------------
consensus_1576#0 CTCGGTCGGGTCGGTTAGGTTAGAATATACCGGAAAAACCGACATCTTAANAACAACCAA 779
consensus_1576#1 ------------------------------------------------------------
consensus_1576#0 GGTTGGGCCACTTTA 794
consensus_1576#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||