These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [AAAACAGCAATGCGAAATAAGCTTAGTGGAGGGATGGGGATGGCAATTTATTGAATTGACGCCGTTCTGTTGGCCACAAGGCCAAAGAGCAAAAGCAGGGGAGAATGTAAATAGTGTTATATCTTGTGTAAAGAACCGTGAATAATAAAAAAAAACCAACATGAAAAAACTCGTTCAAACAGAACAGCTTTTGTGCGATGAAGAAAAAAGAGAGGAAAAAGGAAGAGAACAAAACAAAAACAAACAAACAAACAAAATACAAATGAAGCGAAAGAAATATTGATATTGAGTATGTGTAAGAGAAAAAAAAACACACACACAGAAAAGAGCTCACACAAGTAGAAAAAGAAAAAAACGGAAACACTTGGAAAAGTCGTTAAAGTAAACATACAAAAGAAACAAACGATGTAAATATAGTTGAAGGAAAAAGATGAACAAAAATGGACAGGAAACGAAATAAAAACACAATCAATCAAATGATACAAAAACAAAAAAAAACCAACATAGCAGCAGCAGCAGCAGCAAACGTACAGCTAGGCTTTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAACACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGTATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTCTCTCCTTCTTTCTCTTTTGGTGGCAGAAGAGG] [+] EMBL BX611303 [AAAACAGCAATGCGAAATAAGCTTAGTGGAGGGATGGGGATGGCAATTTATTGAATTGACGCCGTTCTGTTGGCCACAAGGCCAAAGAGCAAAAGCAGGGGAGAATGTAAATAGTGTTATATCTTGTGTAAAGAACCGTGAATAATAAAAAAAAACCAACATGAAAAAACTCGTTCAAACAGAACAGCTTTTGTGCGATGAAGAAAAAAGAGAGGAAAAAGGAAGAGAACAAAACAAAAACAAACAAACAAACAAAATACAAATGAAGCGAAAGAAATATTGATATTGAGTATGTGTAAGAGAAAAAAAAACACACACACAGAAAAGAGCTCACACAAGTAGAAAAAGAAAAAAACGGAAACACTTGGAAAAGTCGTTAAAGTAAACATACAAAAGAAACAAACGATGTAAATATAGTTGAAGGAAAAAGATGAACAAAAATGGACAGGAAACGAAATAAAAACACAATCAATCAAATGATACAAAAACAAAAAAAAACCAACATAGCAGCAGCAGCAGCAGCAAACGTACAGCTAGGCTTTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAACACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGTATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTCTCTCCTTCTTTCTCTTTTGGTGGCAGAAGAGG] consensusID : consensus_1582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [ATCCCCCGAGGTTAAAACAAAAAACAACATAGCAGCAGCAGCAGCGGCAAACGTACAGCTAGGCTTTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAACACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGTATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTTTCTCTCTCTTTCTCTTTTTGATGGCTGTAGAGGGTGTAAAATAGTTACCTTTTTTGTGTCCATTTCTTTGCAGTTCCTTTTGTTCACACATTCTTCTTAAAGTAGTGATAAGAATCGTTTAGTTTTTCTTCAATAAAACAAGGGTAATATTTTTTAACCATTATTTTAGTCGGCACACACGCCTAGTTGTGTAATT] [+] EMBL AL692890 [ATCCCCCGAGGTTAAAACAAAAAACAACATAGCAGCAGCAGCAGCGGCAAACGTACAGCTAGGCTTTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAACACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGTATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTTTCTCTCTCTTTCTCTTTTTGATGGCTGTAGAGGGTGTAAAATAGTTACCTTTTTTGTGTCCATTTCTTTGCAGTTCCTTTTGTTCACACATTCTTCTTAAAGTAGTGATAAGAATCGTTTAGTTTTTCTTCAATAAAACAAGGGTAATATTTTTTAACCATTATTTTAGTCGGCACACACGCCTAGTTGTGTAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1582#0 AAAACAGCAATGCGAAATAAGCTTAGTGGAGGGATGGGGATGGCAATTTATTGAATTGAC 60 consensus_1582#1 ------------------------------------------------------------ consensus_1582#0 GCCGTTCTGTTGGCCACAAGGCCAAAGAGCAAAAGCAGGGGAGAATGTAAATAGTGTTAT 120 consensus_1582#1 ------------------------------------------------------------ consensus_1582#0 ATCTTGTGTAAAGAACCGTGAATAATAAAAAAAAACCAACATGAAAAAACTCGTTCAAAC 180 consensus_1582#1 ------------------------------------------------------------ consensus_1582#0 AGAACAGCTTTTGTGCGATGAAGAAAAAAGAGAGGAAAAAGGAAGAGAACAAAACAAAAA 240 consensus_1582#1 ------------------------------------------------------------ consensus_1582#0 CAAACAAACAAACAAAATACAAATGAAGCGAAAGAAATATTGATATTGAGTATGTGTAAG 300 consensus_1582#1 ------------------------------------------------------------ consensus_1582#0 AGAAAAAAAAACACACACACAGAAAAGAGCTCACACAAGTAGAAAAAGAAAAAAACGGAA 360 consensus_1582#1 ------------------------------------------------------------ consensus_1582#0 ACACTTGGAAAAGTCGTTAAAGTAAACATACAAAAGAAACAAACGATGTAAATATAGTTG 420 consensus_1582#1 ------------------------------------------------------------ consensus_1582#0 AAGGAAAAAGATGAACAAAAATGGACAGGAAACGAAATAAAAACACAATCAATCAAATGA 480 consensus_1582#1 ---------------------------------------------------ATCCCCCGA 9 *** ** consensus_1582#0 TACAAAAACAAAAAAAAACCAACATAGCAGCAGCAGCAGCAGCAAACGTACAGCTAGGCT 540 consensus_1582#1 GGTTAAAACAAAAAA----CAACATAGCAGCAGCAGCAGCGGCAAACGTACAGCTAGGCT 65 *********** ********************* ******************* consensus_1582#0 TTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAA 600 consensus_1582#1 TTAGAAGAGAAGAGAAAGGAAGATTAAATCGGGGCTTTAGTGCAAATACATAAACACAAA 125 ************************************************************ consensus_1582#0 CACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGT 660 consensus_1582#1 CACACAAAAACACGTACACAGTGTGCTCTTCTGGAAAGCGTTGACTGTGTGCGGTGATGT 185 ************************************************************ consensus_1582#0 ATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTCTCT 720 consensus_1582#1 ATCCATGGGAACAGATAGTAATATTTTACTTACTCTAATGCTAATGCTGTTTCTCTTTCT 245 ******************************************************** *** consensus_1582#0 CCTTCTTTCTCTTTT-GGTGGCAGAAGAGG------------------------------ 749 consensus_1582#1 CTCTCTTTCTCTTTTTGATGGCTGTAGAGGGTGTAAAATAGTTACCTTTTTTGTGTCCAT 305 * ************ * **** * ***** consensus_1582#0 ------------------------------------------------------------ consensus_1582#1 TTCTTTGCAGTTCCTTTTGTTCACACATTCTTCTTAAAGTAGTGATAAGAATCGTTTAGT 365 consensus_1582#0 ------------------------------------------------------------ consensus_1582#1 TTTTCTTCAATAAAACAAGGGTAATATTTTTTAACCATTATTTTAGTCGGCACACACGCC 425 consensus_1582#0 ------------- consensus_1582#1 TAGTTGTGTAATT 438 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||