cluster # 1586

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1586 cluster # 1586 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1586#0 length = 499 sequences # 1

consensus_1586#1 length = 479 sequences # 1

consensusID : consensus_1586#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [TCCCCCGAGGTATAATGAAGGTCGTTTGTTAGCACAATTACTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCCGGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGGAATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGACACAGCGAGGTGCAGGAACCTCATCGAACGAGTGACGACGGTATCCTGCGCACGGTTTGATGCCGCCAGCTGCATAGGTTTGTCCTTGCTTGTAATGTTCATATCACAGTTTTACTCCGACAGACAAGTAAGCTCAATCGGTAGTAGGTAATCGTTATCGCGTTTGTCGCGCGCAGCAATCGACACAACAGAAACAGAAATGGCAATTTTACAGCAAATCAGCGGGCATAGAGGAGGCATGAGCTGCGCATGTGAGTGATTGTGAAGCGGAAAACAAAAG]

[+] EMBL AL692909             [TCCCCCGAGGTATAATGAAGGTCGTTTGTTAGCACAATTACTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCCGGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGGAATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGACACAGCGAGGTGCAGGAACCTCATCGAACGAGTGACGACGGTATCCTGCGCACGGTTTGATGCCGCCAGCTGCATAGGTTTGTCCTTGCTTGTAATGTTCATATCACAGTTTTACTCCGACAGACAAGTAAGCTCAATCGGTAGTAGGTAATCGTTATCGCGTTTGTCGCGCGCAGCAATCGACACAACAGAAACAGAAATGGCAATTTTACAGCAAATCAGCGGGCATAGAGGAGGCATGAGCTGCGCATGTGAGTGATTGTGAAGCGGAAAACAAAAG]




>consensus_1586#0
TCCCCCGAGGTATAATGAAGGTCGTTTGTTAGCACAATTACTCAATGGGATCTTATATTC
TACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCCGGTTCGGTAAGCCCGGTTAC
GACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGGAATTTGACAGTGGCGTAACG
AGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGACACAGCGAGGTGCAGGAACCT
CATCGAACGAGTGACGACGGTATCCTGCGCACGGTTTGATGCCGCCAGCTGCATAGGTTT
GTCCTTGCTTGTAATGTTCATATCACAGTTTTACTCCGACAGACAAGTAAGCTCAATCGG
TAGTAGGTAATCGTTATCGCGTTTGTCGCGCGCAGCAATCGACACAACAGAAACAGAAAT
GGCAATTTTACAGCAAATCAGCGGGCATAGAGGAGGCATGAGCTGCGCATGTGAGTGATT
GTGAAGCGGAAAACAAAAG

consensusID : consensus_1586#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence

                              [CACCCCACGGTACCTGGCAGCTGGAGATTCATAATGAAGGTCGTTTGTTAGCACAAATTACTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCCGGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGGAATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGACACAGCGAGGTGCAGCGAACCTCATCGAACGACGTGACGACGGTATCCTGCGCACGGTTTGATGCCGCCAGCTGCATAGAATGCAAATCGACCGCGTACCACTACAAAGGCCGCTGCTATATTCAATGTCCCCCGGGGACGTACCCGTCGGCACCACTTGCCCCGGAAGCGAACGGCACAGCAGCATCCCACCGAGCGGACATCGATGAAATAGCGATCAACGGTCAGCGGCCACTGTCA]

[+] EMBL BX620905             [CACCCCACGGTACCTGGCAGCTGGAGATTCATAATGAAGGTCGTTTGTTAGCACAAATTACTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCCGGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGGAATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGACACAGCGAGGTGCAGCGAACCTCATCGAACGACGTGACGACGGTATCCTGCGCACGGTTTGATGCCGCCAGCTGCATAGAATGCAAATCGACCGCGTACCACTACAAAGGCCGCTGCTATATTCAATGTCCCCCGGGGACGTACCCGTCGGCACCACTTGCCCCGGAAGCGAACGGCACAGCAGCATCCCACCGAGCGGACATCGATGAAATAGCGATCAACGGTCAGCGGCCACTGTCA]




>consensus_1586#1
CACCCCACGGTACCTGGCAGCTGGAGATTCATAATGAAGGTCGTTTGTTAGCACAAATTA
CTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCC
GGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGG
AATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGAC
ACAGCGAGGTGCAGCGAACCTCATCGAACGACGTGACGACGGTATCCTGCGCACGGTTTG
ATGCCGCCAGCTGCATAGAATGCAAATCGACCGCGTACCACTACAAAGGCCGCTGCTATA
TTCAATGTCCCCCGGGGACGTACCCGTCGGCACCACTTGCCCCGGAAGCGAACGGCACAG
CAGCATCCCACCGAGCGGACATCGATGAAATAGCGATCAACGGTCAGCGGCCACTGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1586#0      -----------------TCCCCCGAGGT--ATAATGAAGGTCGTTTGTTAGCACAA-TTA 40
consensus_1586#1      CACCCCACGGTACCTGGCAGCTGGAGATTCATAATGAAGGTCGTTTGTTAGCACAAATTA 60
                                          *  *** *  ************************** ***

consensus_1586#0      CTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCC 100
consensus_1586#1      CTCAATGGGATCTTATATTCTACGGCACGGAAACGCCCGCCCAGCCGAACGATCCGGTCC 120
                      ************************************************************

consensus_1586#0      GGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGG 160
consensus_1586#1      GGTTCGGTAAGCCCGGTTACGACAGTAACTTTGGCGGTGAAATGGAACACAATGCGCTGG 180
                      ************************************************************

consensus_1586#0      AATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGAC 220
consensus_1586#1      AATTTGACAGTGGCGTAACGAGCGATCAGTGGCGAGATATGCAGCAGATCGGCGAGGGAC 240
                      ************************************************************

consensus_1586#0      ACAGCGAGGTGCAG-GAACCTCATCGAACGA-GTGACGACGGTATCCTGCGCACGGTTTG 278
consensus_1586#1      ACAGCGAGGTGCAGCGAACCTCATCGAACGACGTGACGACGGTATCCTGCGCACGGTTTG 300
                      ************** **************** ****************************

consensus_1586#0      ATGCCGCCAGCTGCATAGGTTTGTCCTTGCTTGTAATGTTCATATCACAGTTTTACTCCG 338
consensus_1586#1      ATGCCGCCAGCTGCATAGAATGCAAATCGACCGCG-TACCACTACAAAGGCC--GCTGCT 357
                      ******************  *     * *   *   *     **  *  *     ** * 

consensus_1586#0      ACAGACAAGTAAGCTCAATCGGTAGTAGGTAATCGTTATCGC-GTTTGTCGCGCGCAGCA 397
consensus_1586#1      ATATTCAA----TGTCCCCCGG--GGACGTACCCGTCGGCACCACTTGCCCCG-GAAGCG 410
                      * *  ***      **   ***  * * ***  ***   * *   *** * ** * *** 

consensus_1586#0      ATCGACACAACAGAAACAGAAATGGCAATTTTACAGCAAATCAGCGGGCATAGAGGAGGC 457
consensus_1586#1      AACGGCACAGCAGCATCCCACCGAGCGGACAT-CGATGAAATAGCGATCA-ACGGTCAGC 468
                      * ** **** *** * *  *    **     * *    **  ****  ** *  *   **

consensus_1586#0      ATGAGCTGCGCATGTGAGTGATTGTGAAGCGGAAAACAAAAG 499
consensus_1586#1      GGCCACTGT-CA------------------------------ 479
                           ***  **