These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_159#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [ATGATATCAATTTGTTTATTTATCTTTCTATGCTATCACACCGAATCCTGGCCTATCTTAAATGTGTTTGAAAATCAAACCTGTGAAATGTAGCCACATATCTTAGGATTCTGTTTTCTTCGCATTTCAGTTAAACTGAATACCCTCCATCATGCACGATACTTATACTTGTACTCCAAAACAGCTTTGGGGTTTAGCTTTGCTACAAAAAAAACATTTAAATTCTGTTTGTGGGTAATCATACCGAATTCCATTATTCCTGGTCTGGCAATCGTCAATTCCCGCGTATTACTGGATATGTGCAAATGTATATGCGTTTAAATCCTTTCTTTGCATTGCAGTTTTTACTGGTTCCATCATCAAATTATCTACCTAAGCCCATTTTTTTGTTTGCCGTTTTTAAGGAAGGAAAACCTTTGCGGGCGAGTGATAATTATAACTACGATGCCTAGGTTCAACTTGCATCATTTCACATGAGTAAACCATTCGTAATGTCGCATTCCGTGATGTTACGGTATGGAGTAGCACTCCTAAGGACTGAAAACATTATTCAAATTTTCAACCGTATGTAACTAACCGGTAAATGTTAGGTTAACGAAGCGGACGCTCTTGAACCTATTTTCTTCAATATTATTTTGGAGTTGTGCTGGTCGCGTGCCCTATTGACAGAACCATTTCCATTTGGGGATGCGCCAAAATAGTTCGAATAGTTTAGGATGAGTTTTTTGAATTTTGTTTTTTGTTGTTGCCAGCGTAAGGGGCTTTTGCATAATGAAGTTGAGTAAAACACCGGAACA] [+] EMBL CNS08CFB [ATGATATCAATTTGTTTATTTATCTTTCTATGCTATCACACCGAATCCTGGCCTATCTTAAATGTGTTTGAAAATCAAACCTGTGAAATGTAGCCACATATCTTAGGATTCTGTTTTCTTCGCATTTCAGTTAAACTGAATACCCTCCATCATGCACGATACTTATACTTGTACTCCAAAACAGCTTTGGGGTTTAGCTTTGCTACAAAAAAAACATTTAAATTCTGTTTGTGGGTAATCATACCGAATTCCATTATTCCTGGTCTGGCAATCGTCAATTCCCGCGTATTACTGGATATGTGCAAATGTATATGCGTTTAAATCCTTTCTTTGCATTGCAGTTTTTACTGGTTCCATCATCAAATTATCTACCTAAGCCCATTTTTTTGTTTGCCGTTTTTAAGGAAGGAAAACCTTTGCGGGCGAGTGATAATTATAACTACGATGCCTAGGTTCAACTTGCATCATTTCACATGAGTAAACCATTCGTAATGTCGCATTCCGTGATGTTACGGTATGGAGTAGCACTCCTAAGGACTGAAAACATTATTCAAATTTTCAACCGTATGTAACTAACCGGTAAATGTTAGGTTAACGAAGCGGACGCTCTTGAACCTATTTTCTTCAATATTATTTTGGAGTTGTGCTGGTCGCGTGCCCTATTGACAGAACCATTTCCATTTGGGGATGCGCCAAAATAGTTCGAATAGTTTAGGATGAGTTTTTTGAATTTTGTTTTTTGTTGTTGCCAGCGTAAGGGGCTTTTGCATAATGAAGTTGAGTAAAACACCGGAACA] consensusID : consensus_159#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [GCAGCCGTGGTGGTTCGCNAAATCTTTTNCTTCTCTTGATTTGTGCCCTCCGAACGGTTAAGGCCCTCGACCCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGNCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGCTCCNAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGTATCGTCCGATTGCTTCGTTCCGCATCCCGAAGGAGCAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCCAGGCCCTGAACTTCCGCGTTCAAGGATGTGTACAAACCAGGTGTTCCTCGGCCGGCGTCGACAAGAACACCCNAGTTNCTGGCGCTACTTCCTGGGTAACCTCCNGATCCGGCGGTGCCGCCGGTGCCACGTGGCTCTGCTTCGTGTACCCGCTCGACTNCGCCCGTACCCGTCTCGGTGCGGACGCTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACNNTCTGCTCGACTGTCTGAAGANNANGGTCANGTNNGACGGTATCATCGGTTCTGTACCCGTGGATTAAACGTGTTNGTTCAGNGGTATNATCANTNTATTTGTGNGGNCTTANNTTTGGGTTGN] [+] EMBL CF541756 [GCAGCCGTGGTGGTTCGCNAAATCTTTTNCTTCTCTTGATTTGTGCCCTCCGAACGGTTAAGGCCCTCGACCCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGNCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGCTCCNAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGTATCGTCCGATTGCTTCGTTCCGCATCCCGAAGGAGCAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCCAGGCCCTGAACTTCCGCGTTCAAGGATGTGTACAAACCAGGTGTTCCTCGGCCGGCGTCGACAAGAACACCCNAGTTNCTGGCGCTACTTCCTGGGTAACCTCCNGATCCGGCGGTGCCGCCGGTGCCACGTGGCTCTGCTTCGTGTACCCGCTCGACTNCGCCCGTACCCGTCTCGGTGCGGACGCTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACNNTCTGCTCGACTGTCTGAAGANNANGGTCANGTNNGACGGTATCATCGGTTCTGTACCCGTGGATTAAACGTGTTNGTTCAGNGGTATNATCANTNTATTTGTGNGGNCTTANNTTTGGGTTGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_159#0 ATGATATCAATTTGTTTATTTATCTTTCTATGCTATCACACCGAATCCTGGCCTATCTTA 60 consensus_159#1 --GCAGCCGTGGTGGTTCGCNAAATCTTTTNCTTCTC---TTGATTTGTGCCCT---CCG 52 * * ** ** * * * * * ** ** * ** *** consensus_159#0 AATGTGTTTGAAAATCAAACCTGTGAAATGTAGCCA-CATATCTTAGGATTCTGTTTTCT 119 consensus_159#1 AACG-GTTAAGGCCCTCGACCCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGNCGT 111 ** * *** *** * * * * * ***** ** * consensus_159#0 TCGCATTTCAGTTAAACTGAATACCCTCCATCATGCACGATACTTATACTTGTACTCCAA 179 consensus_159#1 CACCAGACCAGATCCATCGAAAATGACCAAGAAGGC-TGATCCCTATGGCTTCGCCAAGG 170 ** *** * * *** * * * * ** *** * *** * * consensus_159#0 AACAGCTTTGGGGTT-TAGCTTTGCTACAAAAAAAACATTTAAATTCTGTTTGTGGGTAA 238 consensus_159#1 ATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAAC--GGCCGTAGCACCGATCGA 228 * ** *** ** ** *** * * * * * * consensus_159#0 TCATACCGAATTCCATTATTCCTGGTCT-GGCAATCGTCAATTCCCGCGTATTACTGGAT 297 consensus_159#1 ACGCGCTCCNAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAG 288 * * * * *** **** *** * *** ** * * consensus_159#0 ATGTGCAAATGTAT-ATGCGTTTAAATCCTTTCT--TTGCATTGCAGTTTTTACT-GGTT 353 consensus_159#1 CAGTACAAGGGTATCGTCCGATTGCTTCGTTCCGCATCCCGAAGGAGCAGGGAATCGGTG 348 ** *** **** * ** ** ** ** * * * * ** * * *** consensus_159#0 CCATC-ATCAAATTATCTACCTAAGCCCATTTTTTTGTTTGCCGTTTTTAAGGAAGGAAA 412 consensus_159#1 CCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCC---AGGCCCTGA 405 ** ** * ** ** * * * ** ** *** * * consensus_159#0 ACCTTTGCGGGCGAGTGATAATTATAACTACGATGCCTAGGTTCAACTTGCATCATTTCA 472 consensus_159#1 ACTTCCGCGTTCAAG-GATGTGTACAAACCAGGTGTTC---CTCGGCCGGCGTCG----A 457 ** * *** * ** *** ** ** * ** ** * ** ** * consensus_159#0 CATGAGTAAACCA-TTCGTAATGTCGCATTCCGTGATGTTACGGTATGGAGTAGCACTCC 531 consensus_159#1 CAAGAACACCCNAGTTNCTGGCGCTACTTCCTGGGTAACCTCCNGATCCGGCGGTGCCGC 517 ** ** * * * ** * * * * * * * * ** * * * * consensus_159#0 TAAGGACTGAAAACATTA-TTCAAATTTTCAACCGTATGTAACTA-ACCGGTAAATGTTA 589 consensus_159#1 CGGTGCCACGTGGCTCTGCTTCGTGTACCCGCTCGACTNCGCCCGTACCCGTCTCGGTGC 577 * * * * *** * * ** * * *** ** ** consensus_159#0 GGTTAACGAAGCGGACGCTCTTGAACCTATTTTCTTCAATATTATTTTGGAGT-TGTGCT 648 consensus_159#1 GGACGCTGGTCGCGGTGCCGGCGAGCGTGAGTT---CAACNNTCTGCTCGACTGTCTGAA 634 ** * * ** ** * * ** *** * * * ** * * ** consensus_159#0 GGTCGCGTGCCCTATTGACAGAACCATT-----TCCATTTGGGGATGCGCCAAAATAGTT 703 consensus_159#1 GANNANGGTCANGTNNGACGGTATCATCGGTTCTGTACCCGTGGATTAAACGTGTTNGTT 694 * * * *** * * *** * * * **** * * *** consensus_159#0 CGAATAGTTTAGGATGAGTTTTTTGAATTTTGTTTTTTGTTGTTGCCAGCGTAAGGGGCT 763 consensus_159#1 CAGNGGTATNATCANTNTATTTGTGNGGNCTTANNTTTGG-GTTGN-------------- 739 * * * * *** ** * **** **** consensus_159#0 TTTGCATAATGAAGTTGAGTAAAACACCGGAACA 797 consensus_159#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||