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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1213 fasta sequence
[GCAAGAATNCCCCGAGTTATCGTGCATACTTTGCATTAACCCACGGTCCCCGAAATGCCCAATTCCAAATGTGCGGCTGCATTCTGCAACAACCGCCGGGTGGATGTTAGGAAGCGCAAGCTGGCCTAATCTTTCACGCCTTCCCGGNGGACTGAAGTGTGCTGGCGCCAGACCCGATGTGATTGGGCTGTTCTTTGCCCGTACCGGGGGGCNGGTTCNAATTGGGAACGGCCCCTTTTCAAAGGACCTGGAGAGNGCCCGGTCTTGGTTACGNGGCCCAATTTTCCGGCCCAACGGAGGGGACCTTAATTCCNAGACTTGGGCTTCCAATTTCGGCCCGGTNNNGGCCTAAACACAGTCGTTTTGAGGCGCAAGNAAAAANTTCCTTGGGCGGGCCCCCGATATAGTGGCCGCTTTGGTATGTGCAGCACTTTGGCGCGGATTNACCCCATTTACCGGAGATNGACCGCGAGGAAAATGCAGCNGTCGNACATTGGCGGCNTAGTGGGATNTAAACCCCACAATTATCATCCANCCAAACAAAACANGCCCACCNAACAGCATCCTTCCGACAGAGGGACAGCGCCTTTAGATTAGGCCCGACGGCCACCCAAGTCACCAANGTACNCCTGGATTTTTCCTGGGGGACCAAGGCACATNNCATTTGGCATTAAATTTCCGCGCGGCCAACAACNCACAACACCCACACACAGTTNCCCGGTGTACCCCGCGNTGTGCAACACCCCCGGATNCCGGACAACCNANGGCAATTCTCATCCCCGACACTTACCANAACACAACCGTGGTATTAACCACAGGCATGGCGNGAGGGATATGAANCCCGGGGCAACNGCCCCTGAGTGNCACAAGNACACACCATTTGNCAGCCGTGGNCCAAATTTTNNAACAAAANATTCNCGGCGCCCCCCAANTTNTGCACTTTGTGNAACTCGACAANCAGTGCCANTTTTTGGTGATCCATAAAAATCCCGCGGGGGTTGCTGTGCCCTACCACAACACAAATTATTATTTACCCCAACAANCACCACTTTATTGTGTATTGCCNGAGCCAACTACCTATGGCATTCACATACACCNGGACGGNAGCCGTGGAACACTCACNGTACAAAAGTACACATTTGCACAGCNNAACAGTCCCCCNTGGTATTATACAAANACCAACCCCAGGGTAANNTACCGGCGAATTTTTCCC]
[+] EMBL AL692960 [GCAAGAATNCCCCGAGTTATCGTGCATACTTTGCATTAACCCACGGTCCCCGAAATGCCCAATTCCAAATGTGCGGCTGCATTCTGCAACAACCGCCGGGTGGATGTTAGGAAGCGCAAGCTGGCCTAATCTTTCACGCCTTCCCGGNGGACTGAAGTGTGCTGGCGCCAGACCCGATGTGATTGGGCTGTTCTTTGCCCGTACCGGGGGGCNGGTTCNAATTGGGAACGGCCCCTTTTCAAAGGACCTGGAGAGNGCCCGGTCTTGGTTACGNGGCCCAATTTTCCGGCCCAACGGAGGGGACCTTAATTCCNAGACTTGGGCTTCCAATTTCGGCCCGGTNNNGGCCTAAACACAGTCGTTTTGAGGCGCAAGNAAAAANTTCCTTGGGCGGGCCCCCGATATAGTGGCCGCTTTGGTATGTGCAGCACTTTGGCGCGGATTNACCCCATTTACCGGAGATNGACCGCGAGGAAAATGCAGCNGTCGNACATTGGCGGCNTAGTGGGATNTAAACCCCACAATTATCATCCANCCAAACAAAACANGCCCACCNAACAGCATCCTTCCGACAGAGGGACAGCGCCTTTAGATTAGGCCCGACGGCCACCCAAGTCACCAANGTACNCCTGGATTTTTCCTGGGGGACCAAGGCACATNNCATTTGGCATTAAATTTCCGCGCGGCCAACAACNCACAACACCCACACACAGTTNCCCGGTGTACCCCGCGNTGTGCAACACCCCCGGATNCCGGACAACCNANGGCAATTCTCATCCCCGACACTTACCANAACACAACCGTGGTATTAACCACAGGCATGGCGNGAGGGATATGAANCCCGGGGCAACNGCCCCTGAGTGNCACAAGNACACACCATTTGNCAGCCGTGGNCCAAATTTTNNAACAAAANATTCNCGGCGCCCCCCAANTTNTGCACTTTGTGNAACTCGACAANCAGTGCCANTTTTTGGTGATCCATAAAAATCCCGCGGGGGTTGCTGTGCCCTACCACAACACAAATTATTATTTACCCCAACAANCACCACTTTATTGTGTATTGCCNGAGCCAACTACCTATGGCATTCACATACACCNGGACGGNAGCCGTGGAACACTCACNGTACAAAAGTACACATTTGCACAGCNNAACAGTCCCCCNTGGTATTATACAAANACCAACCCCAGGGTAANNTACCGGCGAATTTTTCCC]
consensusID : consensus_1597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence
[GGCAGAATCCGCACGAGGCGAATCTTGTGCCAACTCGTGCATACCTTTGCATAACCCACGGCCCCCGAAATGCCCAATTCCAAATGTGCGGCTGCATTCTGCAACAACCGCCGGGTGGATGTTAGGAAGCGCAAGCTGGCCCTAATCTTTCACGCCTTCCCGGCGGACGAGGCGCTGCGCAGCCGATGGATGGCGTTTTGCCGTCGGGGCGTCGACTGGACGCCCTTCAAGACCGACGCCGTCTGTTCGGCCCACTTTCGCCACGAGGACTATCAGATGGCTCACTCGCCGTTGCTAAAGTTGAGCAAAAATCTGCGCCGTTTGCGTGTGGATGCGGTTCCTTCGGTGCGGGAGGGGATGGTTGTTACCATTTCCAAAAAGCAGAAGCTCGAGGAGCTTGTGCGCCAGCAGCGTTTGGAAGAGCTGTACCGGCAAAACAATCCGTCCGCGGAACCGTCGACAGATTTCGATCACACGTACAGTGGGGTGACGGTAGCGGAAGAACTGAGGGATGAATCGCCCATGCTGGAGAAGATTGTCTATCGGTTGCAGAAATTTCCCAACCTTTGTGCGCTCTGTCTTCGGGCGATCGATGATGAGAAGCTGTTCACACCGTTCGCTTCCTACAGCGAGGCGCTGGAAAGTACGATCGAGGCAAAAGTTGATGAAATAACGGGAGAAGTAATCGATTCGAAGGAACGTACCGGCATCCACCATCTGCTGCCGGATAGGTGTGTGCGAGTGTTGGGAGGTGCTGATTNCAATTCCACANTANCCANAGACAGGTTGCAGTGT]
[+] EMBL BX467510 [GGCAGAATCCGCACGAGGCGAATCTTGTGCCAACTCGTGCATACCTTTGCATAACCCACGGCCCCCGAAATGCCCAATTCCAAATGTGCGGCTGCATTCTGCAACAACCGCCGGGTGGATGTTAGGAAGCGCAAGCTGGCCCTAATCTTTCACGCCTTCCCGGCGGACGAGGCGCTGCGCAGCCGATGGATGGCGTTTTGCCGTCGGGGCGTCGACTGGACGCCCTTCAAGACCGACGCCGTCTGTTCGGCCCACTTTCGCCACGAGGACTATCAGATGGCTCACTCGCCGTTGCTAAAGTTGAGCAAAAATCTGCGCCGTTTGCGTGTGGATGCGGTTCCTTCGGTGCGGGAGGGGATGGTTGTTACCATTTCCAAAAAGCAGAAGCTCGAGGAGCTTGTGCGCCAGCAGCGTTTGGAAGAGCTGTACCGGCAAAACAATCCGTCCGCGGAACCGTCGACAGATTTCGATCACACGTACAGTGGGGTGACGGTAGCGGAAGAACTGAGGGATGAATCGCCCATGCTGGAGAAGATTGTCTATCGGTTGCAGAAATTTCCCAACCTTTGTGCGCTCTGTCTTCGGGCGATCGATGATGAGAAGCTGTTCACACCGTTCGCTTCCTACAGCGAGGCGCTGGAAAGTACGATCGAGGCAAAAGTTGATGAAATAACGGGAGAAGTAATCGATTCGAAGGAACGTACCGGCATCCACCATCTGCTGCCGGATAGGTGTGTGCGAGTGTTGGGAGGTGCTGATTNCAATTCCACANTANCCANAGACAGGTTGCAGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1597#0 ---------------GCAAGAATNCCCCGAGTTATCGTGCATACTTTGCATTAACCCACG 45
consensus_1597#1 GGCAGAATCCGCACGAGGCGAATCTTGTGCCAACTCGTGCATACCTTTGCATAACCCACG 60
**** * ********** ** *********
consensus_1597#0 GTCCCCGAAATGCCCAATTCCAAATGTGCGGCTGCATTCTGCAACAACCGCCGGGTGGAT 105
consensus_1597#1 GCCCCCGAAATGCCCAATTCCAAATGTGCGGCTGCATTCTGCAACAACCGCCGGGTGGAT 120
* **********************************************************
consensus_1597#0 GTTAGGAAGCGCAAGCTGGCC-TAATCTTTCACGCCTTCCCGGNGGACTGAAGTGTGCTG 164
consensus_1597#1 GTTAGGAAGCGCAAGCTGGCCCTAATCTTTCACGCCTTCCCGGCGGACGAG---GCGCTG 177
********************* ********************* **** * ****
consensus_1597#0 GCGCCAGACCCGATGTGATTGGGCTGTTCTTTGCCCGTACCGGGGGGCNGGTTCNAATTG 224
consensus_1597#1 ----CGCAGCCGATG-GATGGCGTTTTGCCGTCGGGGCGTCGACTGGACGCCCTTCAAGA 232
* * ****** *** * * * * * * * ** ** * *
consensus_1597#0 GGAACGGCCCCTTTTCAAAGGACCTGGAGAGNGCCCGGTCTTGGTTACGNGGCCCAATTT 284
consensus_1597#1 CCGACGCCGTCTGTTCGGCCCACTTTCGC--CACGAGGACT--ATCAGATGGCTCACTCG 288
*** * ** *** ** * * ** ** * * *** ** *
consensus_1597#0 TCCGGCCCAACGGAGGGGACCTTAATTCCNAGACTTGGGCTTCCAATTTCGGCCCGGTNN 344
consensus_1597#1 CCGTTGCTAA---AGTTGAGCAAAAATCTGCGCCGTTTGCGTGTGGATGCGGTTCCTTCG 345
* * ** ** ** * ** ** * * * ** * * *** * *
consensus_1597#0 NGGCCTAAAC--ACAGTCGTTTTGAGGCGCAAGNAAAAANTTCCTTGGGCGGGCCCCCGA 402
consensus_1597#1 GTGCGGGAGGGGATGGTTGTTACCATTTCCAAAAAGCAGAAGCTCGAGGAG-----CTTG 400
** * * ** *** * *** * * * ** * *
consensus_1597#0 TATAGTGGCCGCTTTGGTATGTGCAGCACTTTGGCGCGGATTNACCCCATTTACCGGAGA 462
consensus_1597#1 TGCGCCAGCAGCGTTTGGAAGAGCTGTACCGGCAAAACAATCCGTCCGCGGAACCGTCGA 460
* ** ** ** * * * ** * ** ** ** **** **
consensus_1597#0 TNGACCGCGAGGAAA-ATGCAGCNGTCGNACATTGGCGGCNTAG-TGGGATNTAAACCCC 520
consensus_1597#1 CAGATTTCGATCACACGTACAGTGGGGTGACGGTAGCGGAAGAACTGAGGGATGAA---- 516
** *** * * * *** * ** * **** * ** * * **
consensus_1597#0 ACAATTATCATCCANCCAAACAAAACANGCCCACCNA--ACAGCATCCTTCCGACAGAGG 578
consensus_1597#1 -------TCGCCCATGCTGGAGAAGATTGTCTATCGGTTGCAGAAATTTCCCAACCTTTG 569
** *** * ** * * * * *** * * ** ** *
consensus_1597#0 GACAGCGCCTTTAGATTAGGCCCGACGGCCACCCAAGTCACCAANGTACNCCTGGATTTT 638
consensus_1597#1 TGCG----CTCTGTCTTCGGGCGATCGATGATGAGAAGC-TGTTCACACCGTTCGCTTCC 624
* ** * ** ** * ** * * * ** * * **
consensus_1597#0 TCCTGGGGGACCAAGGCACATNNCATTTGGCATTAAATTTCCGCGCGGCCAACAACNCAC 698
consensus_1597#1 TACAGCGAGGCGCTGGAAAGTACGATCGAGGCAAAAGTTGATG---AAATAACGGGAGAA 681
* * * * * * ** * * ** * ** ** * *** *
consensus_1597#0 AACACCCACACACAGTTNCCCGGTGTACCCCGCGNTGTGCAACACCCCCGGATNCCGGAC 758
consensus_1597#1 GTAATCGATTCGAAGGAAC-----GTACC----GGCATCCACCATCTGC---TGCCGGAT 729
* * * * ** * ***** * * ** ** * * * *****
consensus_1597#0 AACCNANGGCAATTCTCATCCCCGACACTTACCANAACACAACCGTGGTATTAACCACAG 818
consensus_1597#1 AGGTGTGTGCGAGTGTTGGG--AGGTGCTGATTNCAATTCCAC------ANTANCCANAG 781
* ** * * * * ** * ** * ** * ** *** **
consensus_1597#0 GCATGGCGNGAGGGATATGAANCCCGGGGCAACNGCCCCTGAGTGNCACAAGNACACACC 878
consensus_1597#1 ACAGGTTGCAGTGT---------------------------------------------- 795
** * * *
consensus_1597#0 ATTTGNCAGCCGTGGNCCAAATTTTNNAACAAAANATTCNCGGCGCCCCCCAANTTNTGC 938
consensus_1597#1 ------------------------------------------------------------
consensus_1597#0 ACTTTGTGNAACTCGACAANCAGTGCCANTTTTTGGTGATCCATAAAAATCCCGCGGGGG 998
consensus_1597#1 ------------------------------------------------------------
consensus_1597#0 TTGCTGTGCCCTACCACAACACAAATTATTATTTACCCCAACAANCACCACTTTATTGTG 1058
consensus_1597#1 ------------------------------------------------------------
consensus_1597#0 TATTGCCNGAGCCAACTACCTATGGCATTCACATACACCNGGACGGNAGCCGTGGAACAC 1118
consensus_1597#1 ------------------------------------------------------------
consensus_1597#0 TCACNGTACAAAAGTACACATTTGCACAGCNNAACAGTCCCCCNTGGTATTATACAAANA 1178
consensus_1597#1 ------------------------------------------------------------
consensus_1597#0 CCAACCCCAGGGTAANNTACCGGCGAATTTTTCCC 1213
consensus_1597#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||