These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CCGCCCACGCGTCCGATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACGATCCATTTGATGATGTAAGCTCTTCATCGGAAGTATCCCAGCCAAGTGGAAGCAGCGTAGCTGGGAAGAGTTCGACAAACATTGATCCTCTTAGCAAACCACTTTTGAATGTGATCGATGCAAAGCAGCTGAGAGATTTACAGATAATAGAGTACAATCCATTTAAGGAGGTAATCCCTTCACCGGAAGTATCCCAGCCAAGTCTGAGCAACGTGGCTGGGAAGATTTCTGCAAAGATTGATGCACCACGAAATCCACGTTTGAATGTCATCCATTCAAAGCAGCAGAGAGATTTAGGGACAATAGAGTACGATCTAGTTGATGAGGTAGGCCCTTCGCGAGAAGTATCCCAGCCAAGTGTGAGCAACATGTCTGGAAAGAGTTTTGCAAAAAATGATCCACCTAGAATGGCACGTGTGAATGTGATCGATGCAAAGCAGCTGAGAGGTTTAGATACAATAGAGTACGATCTAGTTGACGAATTAAGCCCTTCACCGGCAGTATCTCAGCCAAGTGTGAGCATCGTGTCTGGAAAAGATTCTGTTAAAAATGACCCACCTAGAAAACCACGTGTGAATGTGATCGATGCAAAGCAGCTGAGAGATGATGCACAACGTTTCTTCTCCGGCACCAAC] [+] EMBL BM582076 [CCGCCCACGCGTCCGATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACGATCCATTTGATGATGTAAGCTCTTCATCGGAAGTATCCCAGCCAAGTGGAAGCAGCGTAGCTGGGAAGAGTTCGACAAACATTGATCCTCTTAGCAAACCACTTTTGAATGTGATCGATGCAAAGCAGCTGAGAGATTTACAGATAATAGAGTACAATCCATTTAAGGAGGTAATCCCTTCACCGGAAGTATCCCAGCCAAGTCTGAGCAACGTGGCTGGGAAGATTTCTGCAAAGATTGATGCACCACGAAATCCACGTTTGAATGTCATCCATTCAAAGCAGCAGAGAGATTTAGGGACAATAGAGTACGATCTAGTTGATGAGGTAGGCCCTTCGCGAGAAGTATCCCAGCCAAGTGTGAGCAACATGTCTGGAAAGAGTTTTGCAAAAAATGATCCACCTAGAATGGCACGTGTGAATGTGATCGATGCAAAGCAGCTGAGAGGTTTAGATACAATAGAGTACGATCTAGTTGACGAATTAAGCCCTTCACCGGCAGTATCTCAGCCAAGTGTGAGCATCGTGTCTGGAAAAGATTCTGTTAAAAATGACCCACCTAGAAAACCACGTGTGAATGTGATCGATGCAAAGCAGCTGAGAGATGATGCACAACGTTTCTTCTCCGGCACCAAC] consensusID : consensus_1598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [CCTCCTTCGGTAGGGAGTACTCTTATTGTGGTCGAAGAATCACAGCCAAGTGAAAATTTGCAGGATTTATTAAGCGTTGTGATTCCCAAGGAAGANAACGAGGATCCGTTTGATGATTCAGACGCTTCNGAAGAACTTTTGGAACCGAGCACGAATGATCCGCTTGAGCAGGAGTGTTTCAGTGATATGACTGAAACAGAGAAACGGAANAATGAACAGAATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACAATCCATTTGATGATGTAAGCTCTTCATCGGAAG] [+] EMBL BX623529 [CCTCCTTCGGTAGGGAGTACTCTTATTGTGGTCGAAGAATCACAGCCAAGTGAAAATTTGCAGGATTTATTAAGCGTTGTGATTCCCAAGGAAGANAACGAGGATCCGTTTGATGATTCAGACGCTTCNGAAGAACTTTTGGAACCGAGCACGAATGATCCGCTTGAGCAGGAGTGTTTCAGTGATATGACTGAAACAGAGAAACGGAANAATGAACAGAATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACAATCCATTTGATGATGTAAGCTCTTCATCGGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1598#0 CCGCCCACGCGTCCGATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACGATCCAT 60 consensus_1598#1 ------------------------------------------------------------ consensus_1598#0 TTGATGATGTAAGCTCTTCATCGGAAGTATCCCAGCCAAGTGGAAGCAGCGTAGCTGGGA 120 consensus_1598#1 ------------------------------------------------------------ consensus_1598#0 AGAGTTCGACAAACATTGATCCTCTTAGCAAACCACTTTTGAATGTGATCGATGCAAAGC 180 consensus_1598#1 ------------------------------------------------------------ consensus_1598#0 AGCTGAGAGATTTACAGATAATAGAGTACAATCCATTTAAGGAGGTAATCCCTTCACCGG 240 consensus_1598#1 ------------------------------------------------------------ consensus_1598#0 AAGTATCCCAGCCAAGTCTGAGCAACGTGGCTGGGAAGATTTCTGCAAAGATTGATGCAC 300 consensus_1598#1 --------------------CCTCCTTCGGTAGGGAGTACTCTTATTGTGGTCGAAGAAT 40 ** **** * * * * * ** * * consensus_1598#0 CACG---AAATCCACGTTTGAATGTCATCCATTCAAAGCAGCAGAGAGATTTAGGGACAA 357 consensus_1598#1 CACAGCCAAGTGAAAATTTGCAGG--ATTTATT--AAGC-GTTGTGATTCCCAAGGAAGA 95 *** ** * * **** * * ** *** **** * * ** * *** * consensus_1598#0 TAGAGTACGATCTAGTTGATGAGGTAGGCCCTTCGCGAGAAGTATCCCAGCCAAGTGTGA 417 consensus_1598#1 NAACG-AGGATCCGTTTGATGATTCAGACGCTTCNGAAGAACTTTTGGAACCGAGCACGA 154 * * * **** ******* ** * **** **** * * * ** ** ** consensus_1598#0 GCAACATGTCTGGA-AAGAGTTTTGCAAAAA-ATGATCCACCTAGAATGGCACGTGTGAA 475 consensus_1598#1 ATGATCCGCTTGAGCAGGAGTGTTTCAGTGATATGACTGAAACAGA--GAAACGGAANAA 212 * * ** * **** ** ** * **** * *** * *** ** consensus_1598#0 TGTGATCGATGCAAAGCAGCTGAGAGGTTTAGATACAATAGAGTACGATCTAGTTGACGA 535 consensus_1598#1 TGAACAGAATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACAATCCATTTGATGA 272 ** ** * ** **** **** * ****** *** * **** ** consensus_1598#0 ATTAAGCCCTTCACCGGCAGTATCTCAGCCAAGTGTGAGCATCGTGTCTGGAAAAGATTC 595 consensus_1598#1 TGTAAGCTCTTCATCGGAAG---------------------------------------- 292 ***** ***** *** ** consensus_1598#0 TGTTAAAAATGACCCACCTAGAAAACCACGTGTGAATGTGATCGATGCAAAGCAGCTGAG 655 consensus_1598#1 ------------------------------------------------------------ consensus_1598#0 AGATGATGCACAACGTTTCTTCTCCGGCACCAAC 689 consensus_1598#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||