cluster # 160

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Anopheles gambiae
cluster # 160 cluster # 160 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_160#0 length = 235 sequences # 1

consensus_160#1 length = 223 sequences # 1

consensusID : consensus_160#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 235
fasta sequence

                              [NCAGCAGAATCGCCACGAGGTTTATGTCCATCAAGGGTGCTATAGAGTCAAGTTCCCATTACATTAAGTTCATTTCACGTAAGAAGGGGTCAATAACTGTACTGTGGAAAATGGGGATGTACCACGGGTTGCGTGTACGGGCTGAACGCTCTCCGGCAACGCGGTTCCGTTGTAACATATCTTTCCGTACCAAAATGTGCCGGCAGCGGTAGACTATTTCATCATATATACCCAT]

[+] EMBL BX469429             [NCAGCAGAATCGCCACGAGGTTTATGTCCATCAAGGGTGCTATAGAGTCAAGTTCCCATTACATTAAGTTCATTTCACGTAAGAAGGGGTCAATAACTGTACTGTGGAAAATGGGGATGTACCACGGGTTGCGTGTACGGGCTGAACGCTCTCCGGCAACGCGGTTCCGTTGTAACATATCTTTCCGTACCAAAATGTGCCGGCAGCGGTAGACTATTTCATCATATATACCCAT]




>consensus_160#0
NCAGCAGAATCGCCACGAGGTTTATGTCCATCAAGGGTGCTATAGAGTCAAGTTCCCATT
ACATTAAGTTCATTTCACGTAAGAAGGGGTCAATAACTGTACTGTGGAAAATGGGGATGT
ACCACGGGTTGCGTGTACGGGCTGAACGCTCTCCGGCAACGCGGTTCCGTTGTAACATAT
CTTTCCGTACCAAAATGTGCCGGCAGCGGTAGACTATTTCATCATATATACCCAT

consensusID : consensus_160#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [CTGGTTTTTTTTTTTTTAAGTTTTCGGGGGATTGATCAAAAAAAGATTTTTGTTAAAATATTTTAATTTTAGCATAAATTAAATTAAATAGATTTACATAGAAATTGTTTTAATTGTTTGGATGGGGTGGGGTGTGGAGCTTTTAAATTTGGCGAAAGGATGTTTGCTTTTTTTTTTTTTTTTTGTGCGCTTATGCTTATTTTTTTATTTGTTTGTTTTTTAT]

[+] EMBL CNS09G9Y             [CTGGTTTTTTTTTTTTTAAGTTTTCGGGGGATTGATCAAAAAAAGATTTTTGTTAAAATATTTTAATTTTAGCATAAATTAAATTAAATAGATTTACATAGAAATTGTTTTAATTGTTTGGATGGGGTGGGGTGTGGAGCTTTTAAATTTGGCGAAAGGATGTTTGCTTTTTTTTTTTTTTTTTGTGCGCTTATGCTTATTTTTTTATTTGTTTGTTTTTTAT]




>consensus_160#1
CTGGTTTTTTTTTTTTTAAGTTTTCGGGGGATTGATCAAAAAAAGATTTTTGTTAAAATA
TTTTAATTTTAGCATAAATTAAATTAAATAGATTTACATAGAAATTGTTTTAATTGTTTG
GATGGGGTGGGGTGTGGAGCTTTTAAATTTGGCGAAAGGATGTTTGCTTTTTTTTTTTTT
TTTTGTGCGCTTATGCTTATTTTTTTATTTGTTTGTTTTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_160#0      NCAGCAGAATCGCCACGAGGTTTATGTCCATCAAGGGTGCTATAGAGTCAAGTTCCCATT 60
consensus_160#1      ----CTGGTTTTTTTTT--TTTTAAGTTTTCGGGGGATTGATCAAAAAAAGATTTTTGTT 54
                         * *  *          **** **       ** *     * *   *  **    **

consensus_160#0      ACATTAAGTTCATTTCA-CGTAAGAAGGGGTCAATAACTGTACTGTGGAAAATGGGGATG 119
consensus_160#1      AAAATATTTTAATTTTAGCATAAATTAAATTAAATAGATTTAC-ATAGAAATTGTTTTAA 113
                     * * **  ** **** * * ***       * ****  * ***  * **** **      

consensus_160#0      TACCACGGGTTGCGTGTACGGGCTGAACGCTC---TCCGGCAACGCGGTTCCGTTGTAAC 176
consensus_160#1      TTGTTTGGATGGGGTG-GGGTGTGGAGCTTTTAAATTTGGCGAAAGGATGTTTGCTTTTT 172
                     *     ** * * ***   * *  ** *  *    *  *** *   * *       *   

consensus_160#0      ATATCTTTCCGTACCAAAATGTGCCGGCAGCGGTAGACTATTTCATCATATATACCCAT 235
consensus_160#1      TTTTTTTTTTTTGTGCGCTTATGCT--TATTTTTTTATTTGTTTGTTTTTTAT------ 223
                      * * ***   *       * ***    *    *  * *  **  *  * ***