These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [CCGGCGAAGAGTGTTCCGATGCTTAATGTGGTGCTGAATAATACAAAGTGTTTTATTAGTGCAAAAAACCAATAAAAATCGCTGAAAGTGTTGTTAAACGGCAGAGGCCAAACAGTGTTGTGCGTGGCGCACGAAGCACGAACCGAGCATAACGCCATCCAAATCAGCAAGAGCAATGCGTTAGTCTACGGGGGAACCAACCTGGCGGATGATAGCAGCATTGCCGATTGCACAGAACAGAACGCGCCCGTATCAGTACGCAACTCACACATACACACACACACACGCACGCAACACGCAAATACGCAAGCTAAACCACGATGGCTCGCCAGCTGAATCCGAGCCAGCAAAAGATCGCCGAAAAGCTGATCATCCTGAACGATCGCGGCGTGGGCATACTGACGCGCATCTACAACATAAAGAAGGCGTGCGGCGACACCAAATCGAAGCCCGGCTTCCTCTCGGAAAAGTCGCTCGAATCGTCGATCAAATTCATCGTGAAGCGGTTCCCGAACATCGACATCAAGGGCCTGACGGCGATCGCGAGCATCAAGTCGGAAATCATCAAGTCGCTCTCGCTGTACTACTACACGTTCGTCGATCTGCTCGACTTTAAGGGACAATGTGTGCGAGATTCTCACCACGATGGATGCGCTCCAGATCCATCTGGACATTACGCTGAACTTTGGAGCTGACGAAGAACT] [+] EMBL BM590081 [CCGGCGAAGAGTGTTCCGATGCTTAATGTGGTGCTGAATAATACAAAGTGTTTTATTAGTGCAAAAAACCAATAAAAATCGCTGAAAGTGTTGTTAAACGGCAGAGGCCAAACAGTGTTGTGCGTGGCGCACGAAGCACGAACCGAGCATAACGCCATCCAAATCAGCAAGAGCAATGCGTTAGTCTACGGGGGAACCAACCTGGCGGATGATAGCAGCATTGCCGATTGCACAGAACAGAACGCGCCCGTATCAGTACGCAACTCACACATACACACACACACACGCACGCAACACGCAAATACGCAAGCTAAACCACGATGGCTCGCCAGCTGAATCCGAGCCAGCAAAAGATCGCCGAAAAGCTGATCATCCTGAACGATCGCGGCGTGGGCATACTGACGCGCATCTACAACATAAAGAAGGCGTGCGGCGACACCAAATCGAAGCCCGGCTTCCTCTCGGAAAAGTCGCTCGAATCGTCGATCAAATTCATCGTGAAGCGGTTCCCGAACATCGACATCAAGGGCCTGACGGCGATCGCGAGCATCAAGTCGGAAATCATCAAGTCGCTCTCGCTGTACTACTACACGTTCGTCGATCTGCTCGACTTTAAGGGACAATGTGTGCGAGATTCTCACCACGATGGATGCGCTCCAGATCCATCTGGACATTACGCTGAACTTTGGAGCTGACGAAGAACT] consensusID : consensus_1606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTCCCGAACATCGACATCAAGGGCCTGACGGCGATCGCGAGCATCAAGTCGGAAGGGGGCGAGTCGCTCTCGCTGTACTACTACACGTTCGTCGATCTGCTCGACTTTAAGGACAATGTGTGCGAGATTCTCACCACGATGGATGCGCTCCAGATCCATCTGGACATTACGCTGAACTTTGAGCTGACGAAGAACTACCTCGACCTGGTGACGACGTACGTGTCGCTCATGATACTGCTGTCCCGCGTCGAGGACCGGAAGGCCGTGCTGGGGCTGTTCAATGCCGCGTACGAGATGCAGCACACCCAGAGCGATCAGGCATTCCCGCGGCTCGGCCAGATGATCATCGACTACGACATGCCGATCAAGAAGCTGTCGGAAGAGTTCGTACCCCATCAGCGGCTGCTGTCAAGCGCCATCAACTCGCTCACCAAGATTTACTCGATGCGCAACCTCAGTGCGGAGAAGTGGCGCGAGCTGCAGGTGCTGAGCTTGATCGGTACGCCCGCGATGCTGCTGAAAGCGACCAAAACGGACACGATGTCGTGCGAGTACATTTCGCTCGAAACGCTCGACCGATGGGTCATTTTCGGGC] [+] EMBL BM584551 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTCCCGAACATCGACATCAAGGGCCTGACGGCGATCGCGAGCATCAAGTCGGAAGGGGGCGAGTCGCTCTCGCTGTACTACTACACGTTCGTCGATCTGCTCGACTTTAAGGACAATGTGTGCGAGATTCTCACCACGATGGATGCGCTCCAGATCCATCTGGACATTACGCTGAACTTTGAGCTGACGAAGAACTACCTCGACCTGGTGACGACGTACGTGTCGCTCATGATACTGCTGTCCCGCGTCGAGGACCGGAAGGCCGTGCTGGGGCTGTTCAATGCCGCGTACGAGATGCAGCACACCCAGAGCGATCAGGCATTCCCGCGGCTCGGCCAGATGATCATCGACTACGACATGCCGATCAAGAAGCTGTCGGAAGAGTTCGTACCCCATCAGCGGCTGCTGTCAAGCGCCATCAACTCGCTCACCAAGATTTACTCGATGCGCAACCTCAGTGCGGAGAAGTGGCGCGAGCTGCAGGTGCTGAGCTTGATCGGTACGCCCGCGATGCTGCTGAAAGCGACCAAAACGGACACGATGTCGTGCGAGTACATTTCGCTCGAAACGCTCGACCGATGGGTCATTTTCGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1606#0 CCGGCGAAGAGTGTTCCGATGCTTAATGTGGTGCTGAATAATACAAAGTGTTTTATTAGT 60 consensus_1606#1 CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTCCCGAACAT--CGACAT----------- 47 *** ** * *** * ** ** * * * * *** * * * * consensus_1606#0 GCAAAAAACCAATAAAAATCGCTGAAAGTGTTGTTAAACGGCAGAGGCCAAACAGTGTTG 120 consensus_1606#1 -CAAGGGCCTGACGGCGATCGC---GAGCATCA--AGTCGGAAGGGGGCGA-----GTCG 96 *** * * ***** ** * * *** ** ** * * ** * consensus_1606#0 TGCGTGGCGCACGAAGCACGAACCGAGCATAACGCCATCCAAATCAGCAAGAGCAATGCG 180 consensus_1606#1 CTCTCGCTGTAC----TACTACACGTTCGTCGATCTGCTCGACTT--TAAGGACAATGTG 150 * * * ** ** * ** * * * * * * *** ***** * consensus_1606#0 TTAGTCTACGGGGGAACCAACCTGGCGGATGATAGCAGCATTGCCGATTGCACAGAACAG 240 consensus_1606#1 T------GCGAGATTCTCACCACGATGGATGC--GCTCCAGATCCATCTGGACATTACGC 202 * ** * ** * * ***** ** ** ** ** *** ** consensus_1606#0 AACGCGCCCGTATCAGTACGCAACTCACACATACACACACACACACGCACGCAACACGCA 300 consensus_1606#1 TGAAC-TTTGAGCTGACGAAGAACT-ACCTCGACCTGGTGACG-ACGTACGTGTCGCTCA 259 * * **** ** ** ** *** *** * * ** consensus_1606#0 -AATACGCAAGCTAAACCACGATGGCTCGCCAGCTGAATCCGAGCCAGCAAAAGAT-CGC 358 consensus_1606#1 TGATACTGCTGTCCCGCGTCGAGGACCGGAAGGCCGTGCTGGGGCTGTTCAATGCCGCGT 319 **** * * *** * * * ** * * ** ** * ** consensus_1606#0 -CGAAAAGCTGATCATCCTGAACGATCGCGGCGTGGGCATA-CTGACGCGCATCTACAAC 416 consensus_1606#1 ACGAGATGCAGCACACCCAGAGCGATCA-GGCATTCCCGCGGCTCGGCCAGATGATCATC 378 *** * ** * ** ** ** ***** *** * * ** * ** ** * consensus_1606#0 ATAAAGAAGGCGTGCGGCGACACCAAATCGAAGCCCGGCTTCCTCTCGGAAAAGTCGCT- 475 consensus_1606#1 GACTACGACATGCCGATCAAGAAGCTGTCGGAAGAGTTCGTACCCCATCAGCGGCTGCTG 438 * * * * * * *** * * * * * * * *** consensus_1606#0 CGAATCGTCGATCAAATTCATCGTGAAGCGGTTCCCGAACATCGACATCAAGGGCCTGAC 535 consensus_1606#1 TCAAGCGCC-ATCAACTCGCTCACCAAGATTTACTCGATGCGCAACCTCAGTG--CGGAG 495 ** ** * ***** * ** *** * * *** * ** *** * * ** consensus_1606#0 GGCGATCGCGAGCATCAAGT-CGGAAATCATCAAGTCGCTCTCGCTGTACTACTACACGT 594 consensus_1606#1 AAGTGGCGCGAGCTGCAGGTGCTGAGCTTGATCGGT-ACGCCCGCGATGCTGCTGAAAGC 554 ******* ** ** * ** * ** * * *** * ** ** * * consensus_1606#0 TCGTCGATCTG-CTCGACTTTAAGGGA---CAATGTGTGCGAGATTCTCACCACGATGGA 650 consensus_1606#1 GACCAAAACGGACACGATGTCGTGCGAGTACATTTCGCTCGAAACGCTCGAC-CGATGGG 613 * * * * *** * * ** ** * * *** * *** * ****** consensus_1606#0 TGCGCTCCAGATCCATCTGGACATTACGCTGAACTTTGGAGCTGACGAAGAACT 704 consensus_1606#1 TCATTTTCGGGC------------------------------------------ 625 * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||