These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CCGCCCACGCGTCCGGCAACGGCACTGCAGCGAAGCAACAGTGCAATCGTCTGTCCCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACAACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCGTACGCTGCACCGTGTTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAAGCTGAGTGATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCCCATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAAAACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAAACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGAATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGACCGCCATCCTGGAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGTGCCCCAGCTGCTGCAGCACCTGCAGGACACGCCCGACTTTTTACATCGAGATGAAGTGGGAGTTCACCAGCTGGGTGCCGCTAATGTCGCGCGTCTGCCCGAGCGACACGTACAAGGTGTTC] [+] EMBL BM640885 [CCGCCCACGCGTCCGGCAACGGCACTGCAGCGAAGCAACAGTGCAATCGTCTGTCCCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACAACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCGTACGCTGCACCGTGTTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAAGCTGAGTGATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCCCATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAAAACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAAACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGAATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGACCGCCATCCTGGAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGTGCCCCAGCTGCTGCAGCACCTGCAGGACACGCCCGACTTTTTACATCGAGATGAAGTGGGAGTTCACCAGCTGGGTGCCGCTAATGTCGCGCGTCTGCCCGAGCGACACGTACAAGGTGTTC] consensusID : consensus_1614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CCGGAAAAAAAAAACTTTCCTCGGACGCAAAAATCTATCCTGTTTTCCATAATTATTCTTTCCTCACTTCCCGGTCACTAGCAACGGCACTGCAGCGGAGCAACAGTGCAATCGTCTGTCCCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACAACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCGTACGCTGCACCGTATTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAGTGCTGAGTGATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCCCATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAAAACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAAACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGAATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGACCGCCATCCTGGAAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGT] [+] EMBL BM576055 [CCGGAAAAAAAAAACTTTCCTCGGACGCAAAAATCTATCCTGTTTTCCATAATTATTCTTTCCTCACTTCCCGGTCACTAGCAACGGCACTGCAGCGGAGCAACAGTGCAATCGTCTGTCCCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACAACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCGTACGCTGCACCGTATTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAGTGCTGAGTGATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCCCATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAAAACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAAACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGAATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGACCGCCATCCTGGAAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1614#0 ------------------------------------------------------------ consensus_1614#1 CCGGAAAAAAAAAACTTTCCTCGGACGCAAAAATCTATCCTGTTTTCCATAATTATTCTT 60 consensus_1614#0 -----CCGCCCACGCGTCCGGCAACGGCACTGCAGCGAAGCAACAGTGCAATCGTCTGTC 55 consensus_1614#1 TCCTCACTTCCCGGTCACTAGCAACGGCACTGCAGCGGAGCAACAGTGCAATCGTCTGTC 120 * ** * * ***************** ********************** consensus_1614#0 CCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACA 115 consensus_1614#1 CCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACA 180 ************************************************************ consensus_1614#0 ACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCG 175 consensus_1614#1 ACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCG 240 ************************************************************ consensus_1614#0 TACGCTGCACCGTGTTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAA-GCTGAGT 234 consensus_1614#1 TACGCTGCACCGTATTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAGTGCTGAGT 300 ************* ************************************* ******* consensus_1614#0 GATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCC 294 consensus_1614#1 GATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCC 360 ************************************************************ consensus_1614#0 CATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAA 354 consensus_1614#1 CATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAA 420 ************************************************************ consensus_1614#0 AACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAA 414 consensus_1614#1 AACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAA 480 ************************************************************ consensus_1614#0 ACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGA 474 consensus_1614#1 ACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGA 540 ************************************************************ consensus_1614#0 ATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGAC 534 consensus_1614#1 ATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGAC 600 ************************************************************ consensus_1614#0 CGCCATCCTGGA-GGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGTGCCCC 593 consensus_1614#1 CGCCATCCTGGAAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGT----- 655 ************ ****************************************** consensus_1614#0 AGCTGCTGCAGCACCTGCAGGACACGCCCGACTTTTTACATCGAGATGAAGTGGGAGTTC 653 consensus_1614#1 ------------------------------------------------------------ consensus_1614#0 ACCAGCTGGGTGCCGCTAATGTCGCGCGTCTGCCCGAGCGACACGTACAAGGTGTTC 710 consensus_1614#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||