Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1636 cluster # 1636       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1636#0 length = 616 sequences # 1  
consensus_1636#1 length = 349 sequences # 1  

consensusID : consensus_1636#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence
                              [GCAACTACTCCTTCCCGGAACCTGGCGAGCAACGAAGAGGAGCACCGTCAGTCTTCTGCCCTGTCCGAGCATTTGGTGCACCATTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAATTGAAGACTTGGATGCCCATCTGCCCGATCAGCATCCAGCGTCGGGCATGTTTTCGTTTCCGAGCGACGCGCTTGCCAGCATGACGACGGCGGCGGCAAGCGCACCCTACCGGCAGACGGCGAAAGCACCGCACGATGCGGGCGGCGCACCGATGCGGCGGGGTCGCTCCCGGGGCGGCCGCTCCCAGTCGCGCGGCCGTCGCATGGCAATGAAGGCAGCCCAGGAGCAGCAGCAGCACGAACAGCCGTCGAGCCCGTCGCCGGCGCGCCGAGGACGCAGGAGCCGCTCCCGGTCGGCCGCGGCGTCGCACAAGCCCGCCCGCAGCCAGTCGAGGCGCCGGAGCCGCAGCCGGGCCCGCTCTCGGTCCCGGTCCCGCCCCGCCCGCAAGCGGTCGCAGAGNGGTGGCCGTCGTACCAGCCGCTCCCGCCGTCGCTAGGTGTCGCTGGATGGAAGAATTCGCAACAACGACAACAACGGTTTCGCGGGTACGCTCT]

[+] EMBL BX623065             [GCAACTACTCCTTCCCGGAACCTGGCGAGCAACGAAGAGGAGCACCGTCAGTCTTCTGCCCTGTCCGAGCATTTGGTGCACCATTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAATTGAAGACTTGGATGCCCATCTGCCCGATCAGCATCCAGCGTCGGGCATGTTTTCGTTTCCGAGCGACGCGCTTGCCAGCATGACGACGGCGGCGGCAAGCGCACCCTACCGGCAGACGGCGAAAGCACCGCACGATGCGGGCGGCGCACCGATGCGGCGGGGTCGCTCCCGGGGCGGCCGCTCCCAGTCGCGCGGCCGTCGCATGGCAATGAAGGCAGCCCAGGAGCAGCAGCAGCACGAACAGCCGTCGAGCCCGTCGCCGGCGCGCCGAGGACGCAGGAGCCGCTCCCGGTCGGCCGCGGCGTCGCACAAGCCCGCCCGCAGCCAGTCGAGGCGCCGGAGCCGCAGCCGGGCCCGCTCTCGGTCCCGGTCCCGCCCCGCCCGCAAGCGGTCGCAGAGNGGTGGCCGTCGTACCAGCCGCTCCCGCCGTCGCTAGGTGTCGCTGGATGGAAGAATTCGCAACAACGACAACAACGGTTTCGCGGGTACGCTCT]


>consensus_1636#0 GCAACTACTCCTTCCCGGAACCTGGCGAGCAACGAAGAGGAGCACCGTCAGTCTTCTGCC CTGTCCGAGCATTTGGTGCACCATTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTA ATTGAAGACTTGGATGCCCATCTGCCCGATCAGCATCCAGCGTCGGGCATGTTTTCGTTT CCGAGCGACGCGCTTGCCAGCATGACGACGGCGGCGGCAAGCGCACCCTACCGGCAGACG GCGAAAGCACCGCACGATGCGGGCGGCGCACCGATGCGGCGGGGTCGCTCCCGGGGCGGC CGCTCCCAGTCGCGCGGCCGTCGCATGGCAATGAAGGCAGCCCAGGAGCAGCAGCAGCAC GAACAGCCGTCGAGCCCGTCGCCGGCGCGCCGAGGACGCAGGAGCCGCTCCCGGTCGGCC GCGGCGTCGCACAAGCCCGCCCGCAGCCAGTCGAGGCGCCGGAGCCGCAGCCGGGCCCGC TCTCGGTCCCGGTCCCGCCCCGCCCGCAAGCGGTCGCAGAGNGGTGGCCGTCGTACCAGC CGCTCCCGCCGTCGCTAGGTGTCGCTGGATGGAAGAATTCGCAACAACGACAACAACGGT TTCGCGGGTACGCTCT



consensusID : consensus_1636#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence
                              [GCAAGACTCGCCACGAGGTGAAATTGTCTACGGTTCGTGCACTTCACAGTGCAACTACTCCTTCCCGGAACCTGGCTGAGCAACGAAGAGGAGCACCGGTCAGTCTTCTGCCCTGTCCGAGCATNTGGTGCACCAGTTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAAGTTGAAGATTTGGATGCCCATCGTGCCCGATCAGCGACGAAGCGTCGGGCATGTATTAGTCGTTATCCGAGCGACGCGCGTTGCCGGCATGACGACGGCAGGCGGCAAGCGCACCCTACCGGCAGACGGCAAAAGCACCGGACGAGTGCGGGCGGCGCACCGATGACGGCGGGGG]

[+] EMBL BX469200             [GCAAGACTCGCCACGAGGTGAAATTGTCTACGGTTCGTGCACTTCACAGTGCAACTACTCCTTCCCGGAACCTGGCTGAGCAACGAAGAGGAGCACCGGTCAGTCTTCTGCCCTGTCCGAGCATNTGGTGCACCAGTTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAAGTTGAAGATTTGGATGCCCATCGTGCCCGATCAGCGACGAAGCGTCGGGCATGTATTAGTCGTTATCCGAGCGACGCGCGTTGCCGGCATGACGACGGCAGGCGGCAAGCGCACCCTACCGGCAGACGGCAAAAGCACCGGACGAGTGCGGGCGGCGCACCGATGACGGCGGGGG]


>consensus_1636#1 GCAAGACTCGCCACGAGGTGAAATTGTCTACGGTTCGTGCACTTCACAGTGCAACTACTC CTTCCCGGAACCTGGCTGAGCAACGAAGAGGAGCACCGGTCAGTCTTCTGCCCTGTCCGA GCATNTGGTGCACCAGTTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAAGTTGAA GATTTGGATGCCCATCGTGCCCGATCAGCGACGAAGCGTCGGGCATGTATTAGTCGTTAT CCGAGCGACGCGCGTTGCCGGCATGACGACGGCAGGCGGCAAGCGCACCCTACCGGCAGA CGGCAAAAGCACCGGACGAGTGCGGGCGGCGCACCGATGACGGCGGGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1636#0      --------------------------------------------------GCAACTACTC 10
consensus_1636#1      GCAAGACTCGCCACGAGGTGAAATTGTCTACGGTTCGTGCACTTCACAGTGCAACTACTC 60
                                                                        **********

consensus_1636#0      CTTCCCGGAACCTGGC-GAGCAACGAAGAGGAGCACCG-TCAGTCTTCTGCCCTGTCCGA 68
consensus_1636#1      CTTCCCGGAACCTGGCTGAGCAACGAAGAGGAGCACCGGTCAGTCTTCTGCCCTGTCCGA 120
                      **************** ********************* *********************

consensus_1636#0      GCATTTGGTGCACCA-TTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAA-TTGAA 126
consensus_1636#1      GCATNTGGTGCACCAGTTTTTTGCACACTTTCGAAACGAGCATGGATCCGGTAAGTTGAA 180
                      **** ********** ************************************** *****

consensus_1636#0      GACTTGGATGCCCATC-TGCCCGATCAGCATCCA-GCGTCGGGCATGTTTTCGTT----T 180
consensus_1636#1      GATTTGGATGCCCATCGTGCCCGATCAGCGACGAAGCGTCGGGCATGTATTAGTCGTTAT 240
                      ** ************* ************  * * ************* ** **     *

consensus_1636#0      CCGAGCGACGCGC-TTGCCAGCATGACGACGGC-GGCGGCAAGCGCACCCTACCGGCAGA 238
consensus_1636#1      CCGAGCGACGCGCGTTGCCGGCATGACGACGGCAGGCGGCAAGCGCACCCTACCGGCAGA 300
                      ************* ***** ************* **************************

consensus_1636#0      CGGCGAAAGCACCGCACGA-TGCGGGCGGCGCACCGATG-CGGCGGGGTCGCTCCCGGGG 296
consensus_1636#1      CGGCAAAAGCACCGGACGAGTGCGGGCGGCGCACCGATGACGGCGGGGG----------- 349
                      **** ********* **** ******************* ********            

consensus_1636#0      CGGCCGCTCCCAGTCGCGCGGCCGTCGCATGGCAATGAAGGCAGCCCAGGAGCAGCAGCA 356
consensus_1636#1      ------------------------------------------------------------
                                                                                  

consensus_1636#0      GCACGAACAGCCGTCGAGCCCGTCGCCGGCGCGCCGAGGACGCAGGAGCCGCTCCCGGTC 416
consensus_1636#1      ------------------------------------------------------------
                                                                                  

consensus_1636#0      GGCCGCGGCGTCGCACAAGCCCGCCCGCAGCCAGTCGAGGCGCCGGAGCCGCAGCCGGGC 476
consensus_1636#1      ------------------------------------------------------------
                                                                                  

consensus_1636#0      CCGCTCTCGGTCCCGGTCCCGCCCCGCCCGCAAGCGGTCGCAGAGNGGTGGCCGTCGTAC 536
consensus_1636#1      ------------------------------------------------------------
                                                                                  

consensus_1636#0      CAGCCGCTCCCGCCGTCGCTAGGTGTCGCTGGATGGAAGAATTCGCAACAACGACAACAA 596
consensus_1636#1      ------------------------------------------------------------
                                                                                  

consensus_1636#0      CGGTTTCGCGGGTACGCTCT 616
consensus_1636#1      --------------------
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)