These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [GATAGAGAGTGCAGAAGCGTTACGTGAGGTTGGCTGTCCGAGCTAACGGCCGCGGCCAAAAAATTCATTTGAACGGACACATCCGAAACAAAAAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCATGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTCCGTTGGTAGATTGGTGCTGGAGCAGTTTTATTTGAACCAGAAATTCGGCAAACAAACGTAACACCAAATTGAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACCAATTTTTTTTAAATACTTCCCCGAAAATGTTGCAGAA] [+] EMBL BX617121 [GATAGAGAGTGCAGAAGCGTTACGTGAGGTTGGCTGTCCGAGCTAACGGCCGCGGCCAAAAAATTCATTTGAACGGACACATCCGAAACAAAAAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCATGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTCCGTTGGTAGATTGGTGCTGGAGCAGTTTTATTTGAACCAGAAATTCGGCAAACAAACGTAACACCAAATTGAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACCAATTTTTTTTAAATACTTCCCCGAAAATGTTGCAGAA] consensusID : consensus_164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [ATCGCCGAGGNTAAAGCAATAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCAAGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTTCCCGTTGGTAGATTGGTGTTGGAGCAGTTTTATTTGAACAAGAAATTCGGCAAACAAACGTAACACCAAATTAAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACC] [+] EMBL AL932303 [ATCGCCGAGGNTAAAGCAATAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCAAGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTTCCCGTTGGTAGATTGGTGTTGGAGCAGTTTTATTTGAACAAGAAATTCGGCAAACAAACGTAACACCAAATTAAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_164#0 GATAGAGAGTGCAGAAGCGTTACGTGAGGTTGGCTGTCCGAGCTAACGGCCGCGGCCAAA 60 consensus_164#1 ------------------------------------------------------------ consensus_164#0 AAATTCATTTGAACGGACACATCCGAAACAAAAAGCAGTACGGTCCAGTCTGCGCAACGA 120 consensus_164#1 ------------ATCGCCGAGGNTAAAGCAATA-GCAGTACGGTCCAGTCTGCGCAACGA 47 * * * ** *** * ************************** consensus_164#0 CTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCATGCAT 180 consensus_164#1 CTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCAAGCAT 107 ******************************************************* **** consensus_164#0 CAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGT 240 consensus_164#1 CAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGT 167 ************************************************************ consensus_164#0 ATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAG 300 consensus_164#1 ATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAG 227 ************************************************************ consensus_164#0 ATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGC 360 consensus_164#1 ATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGC 287 ************************************************************ consensus_164#0 ACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTT--CCGTTGG 418 consensus_164#1 ACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTTCCCGTTGG 347 *************************************************** ******* consensus_164#0 TAGATTGGTGCTGGAGCAGTTTTATTTGAACCAGAAATTCGGCAAACAAACGTAACACCA 478 consensus_164#1 TAGATTGGTGTTGGAGCAGTTTTATTTGAACAAGAAATTCGGCAAACAAACGTAACACCA 407 ********** ******************** **************************** consensus_164#0 AATTGAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGT 538 consensus_164#1 AATTAAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGT 467 **** ******************************************************* consensus_164#0 ATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACCAATTTTTTTT 598 consensus_164#1 ATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACC---------- 517 ************************************************** consensus_164#0 AAATACTTCCCCGAAAATGTTGCAGAA 625 consensus_164#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||