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Anopheles gambiae
cluster # 164 cluster # 164       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_164#0 length = 625 sequences # 1  
consensus_164#1 length = 517 sequences # 1  

consensusID : consensus_164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence
                              [GATAGAGAGTGCAGAAGCGTTACGTGAGGTTGGCTGTCCGAGCTAACGGCCGCGGCCAAAAAATTCATTTGAACGGACACATCCGAAACAAAAAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCATGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTCCGTTGGTAGATTGGTGCTGGAGCAGTTTTATTTGAACCAGAAATTCGGCAAACAAACGTAACACCAAATTGAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACCAATTTTTTTTAAATACTTCCCCGAAAATGTTGCAGAA]

[+] EMBL BX617121             [GATAGAGAGTGCAGAAGCGTTACGTGAGGTTGGCTGTCCGAGCTAACGGCCGCGGCCAAAAAATTCATTTGAACGGACACATCCGAAACAAAAAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCATGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTCCGTTGGTAGATTGGTGCTGGAGCAGTTTTATTTGAACCAGAAATTCGGCAAACAAACGTAACACCAAATTGAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACCAATTTTTTTTAAATACTTCCCCGAAAATGTTGCAGAA]


>consensus_164#0 GATAGAGAGTGCAGAAGCGTTACGTGAGGTTGGCTGTCCGAGCTAACGGCCGCGGCCAAA AAATTCATTTGAACGGACACATCCGAAACAAAAAGCAGTACGGTCCAGTCTGCGCAACGA CTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCATGCAT CAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGT ATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAG ATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGC ACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTCCGTTGGTA GATTGGTGCTGGAGCAGTTTTATTTGAACCAGAAATTCGGCAAACAAACGTAACACCAAA TTGAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTAT TTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACCAATTTTTTTTAA ATACTTCCCCGAAAATGTTGCAGAA



consensusID : consensus_164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence
                              [ATCGCCGAGGNTAAAGCAATAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCAAGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTTCCCGTTGGTAGATTGGTGTTGGAGCAGTTTTATTTGAACAAGAAATTCGGCAAACAAACGTAACACCAAATTAAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACC]

[+] EMBL AL932303             [ATCGCCGAGGNTAAAGCAATAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCAAGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTTCCCGTTGGTAGATTGGTGTTGGAGCAGTTTTATTTGAACAAGAAATTCGGCAAACAAACGTAACACCAAATTAAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACC]


>consensus_164#1 ATCGCCGAGGNTAAAGCAATAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGA GATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCAAGCATCAAAACGGCTTTG GAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGC AGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAA CGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCG TATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTTCCCGTTGGTAGATTGGTGTTG GAGCAGTTTTATTTGAACAAGAAATTCGGCAAACAAACGTAACACCAAATTAAGGTAAAT GTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTC TTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_164#0      GATAGAGAGTGCAGAAGCGTTACGTGAGGTTGGCTGTCCGAGCTAACGGCCGCGGCCAAA 60
consensus_164#1      ------------------------------------------------------------
                                                                                 

consensus_164#0      AAATTCATTTGAACGGACACATCCGAAACAAAAAGCAGTACGGTCCAGTCTGCGCAACGA 120
consensus_164#1      ------------ATCGCCGAGGNTAAAGCAATA-GCAGTACGGTCCAGTCTGCGCAACGA 47
                                 *  * *       ** *** * **************************

consensus_164#0      CTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCATGCAT 180
consensus_164#1      CTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCAAGCAT 107
                     ******************************************************* ****

consensus_164#0      CAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGT 240
consensus_164#1      CAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGT 167
                     ************************************************************

consensus_164#0      ATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAG 300
consensus_164#1      ATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAG 227
                     ************************************************************

consensus_164#0      ATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGC 360
consensus_164#1      ATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGC 287
                     ************************************************************

consensus_164#0      ACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTT--CCGTTGG 418
consensus_164#1      ACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTTCCCGTTGG 347
                     ***************************************************  *******

consensus_164#0      TAGATTGGTGCTGGAGCAGTTTTATTTGAACCAGAAATTCGGCAAACAAACGTAACACCA 478
consensus_164#1      TAGATTGGTGTTGGAGCAGTTTTATTTGAACAAGAAATTCGGCAAACAAACGTAACACCA 407
                     ********** ******************** ****************************

consensus_164#0      AATTGAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGT 538
consensus_164#1      AATTAAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGT 467
                     **** *******************************************************

consensus_164#0      ATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACCAATTTTTTTT 598
consensus_164#1      ATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACC---------- 517
                     **************************************************          

consensus_164#0      AAATACTTCCCCGAAAATGTTGCAGAA 625
consensus_164#1      ---------------------------
                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)