|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence
[CCGGAAAAAAGGAGGTGCTTTGCAGAAGATAAAAAAGCGGTTATCGCACAGCTTCGGCCGATTATCGATATCGCGCGAGGAAAGCGACGACTCCACGCAGCAGAACAACCACCATCACCTTCCGCACCATCACCATCATCACCACGGACATGGTCACAATCGTGGCGGTAAAGTGCCCTTCAACGGTTACACATCCGAGGAGTACCTCGACCGACTGGAACCAAACGGCAACATCCCGGCCGATAAGTCCTACAGCAAACATTGGAACAGAGTAAGCGATCACGAGCGCGTCCATCGGCAGGCTGGTCGGTGTCGTCCGACAGCAAGCTGCTGGACGACGACATCCGGGAGGAAACACGTGTGATAATGCGACCTAAGAAGCCACCCCGGCCGAAATCCGAAGTGTTCTTGAACAAGCACGACCCGCACCCGAGAAGGAAACGGTTTAGTGCATTCGGGGGTGACTCGCCATTTGGCAAATCAGATGCATACATCAAACTAGAGCAACTCGGTGAAGGATCCTACGCGACGGTATTTAAAGGTTATAGCAATTTAACAAATCAAGTGGTAGCGTTAAAGGAATTCAGGTTACAGGGAGGAGGAGGGCGCACCGTTCACGGCCATACGCGAGGCATCGCTGCTGAAGGAACTGAAACATTTCGAACATCGTGACCCTGCACGACATCGTGCACACGCGTGAAACGCTCACGTT]
[+] EMBL BM578547 [CCGGAAAAAAGGAGGTGCTTTGCAGAAGATAAAAAAGCGGTTATCGCACAGCTTCGGCCGATTATCGATATCGCGCGAGGAAAGCGACGACTCCACGCAGCAGAACAACCACCATCACCTTCCGCACCATCACCATCATCACCACGGACATGGTCACAATCGTGGCGGTAAAGTGCCCTTCAACGGTTACACATCCGAGGAGTACCTCGACCGACTGGAACCAAACGGCAACATCCCGGCCGATAAGTCCTACAGCAAACATTGGAACAGAGTAAGCGATCACGAGCGCGTCCATCGGCAGGCTGGTCGGTGTCGTCCGACAGCAAGCTGCTGGACGACGACATCCGGGAGGAAACACGTGTGATAATGCGACCTAAGAAGCCACCCCGGCCGAAATCCGAAGTGTTCTTGAACAAGCACGACCCGCACCCGAGAAGGAAACGGTTTAGTGCATTCGGGGGTGACTCGCCATTTGGCAAATCAGATGCATACATCAAACTAGAGCAACTCGGTGAAGGATCCTACGCGACGGTATTTAAAGGTTATAGCAATTTAACAAATCAAGTGGTAGCGTTAAAGGAATTCAGGTTACAGGGAGGAGGAGGGCGCACCGTTCACGGCCATACGCGAGGCATCGCTGCTGAAGGAACTGAAACATTTCGAACATCGTGACCCTGCACGACATCGTGCACACGCGTGAAACGCTCACGTT]
consensusID : consensus_1645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[CCGCGGACGCGTGGGATCGTGACCCTGCACGACATCGTGCACACGCGTGAAACGCTCACGTTCGTCTTCGAGTTTGTGAATACGGACCTGTCACAGTACATGGAGCGACACCCGGGCGGACTCGACCACCGAAACGTGCGCCTGTTCCTGTTCCAGCTGCTGCGAGGGCTTTCCTATTGCCATAAGCGACGGGTGCTGCACCGGGACGTGAAGCCGCAGAACCTGCTCATCAGCGAAACGGGCGAGCTGAAGCTGGCCGATTTTGGGCTGGCCCGTGCCAAGAGCGTCCCCAGTCATACCTACTCGCACGAGGTAGTCACACTGTGGTACCGACCGCCAGATGTCCTGCTCGGCAGTACGGAGTACTCCACCTCGCTCGACATCTGGGGCGTCGGGTGTATCTTTGTGGAGATGATTACCGGCATGCCGACCTTCCCCGGCATACGCGACACGTACGATCAGCTGGACAAGATCTTCAAAATTCTCGGCACACCGACGGAGGACACGTGGCCCGGGGTAACGCACCTACCGGGGTATAAGCTACAAATGCTAGGCTTTTTCAAATCCCGCAAGCTAGGGCTGAGCTTTCCCCGGTTGTACGACATCAACGAGGGCGAAACGATGGCCACCGCGTTTCTGCAGCTCA]
[+] EMBL BM576097 [CCGCGGACGCGTGGGATCGTGACCCTGCACGACATCGTGCACACGCGTGAAACGCTCACGTTCGTCTTCGAGTTTGTGAATACGGACCTGTCACAGTACATGGAGCGACACCCGGGCGGACTCGACCACCGAAACGTGCGCCTGTTCCTGTTCCAGCTGCTGCGAGGGCTTTCCTATTGCCATAAGCGACGGGTGCTGCACCGGGACGTGAAGCCGCAGAACCTGCTCATCAGCGAAACGGGCGAGCTGAAGCTGGCCGATTTTGGGCTGGCCCGTGCCAAGAGCGTCCCCAGTCATACCTACTCGCACGAGGTAGTCACACTGTGGTACCGACCGCCAGATGTCCTGCTCGGCAGTACGGAGTACTCCACCTCGCTCGACATCTGGGGCGTCGGGTGTATCTTTGTGGAGATGATTACCGGCATGCCGACCTTCCCCGGCATACGCGACACGTACGATCAGCTGGACAAGATCTTCAAAATTCTCGGCACACCGACGGAGGACACGTGGCCCGGGGTAACGCACCTACCGGGGTATAAGCTACAAATGCTAGGCTTTTTCAAATCCCGCAAGCTAGGGCTGAGCTTTCCCCGGTTGTACGACATCAACGAGGGCGAAACGATGGCCACCGCGTTTCTGCAGCTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1645#0 CCGGAAAAAAGGAGGTGCTTTGCAGAAGATAAAAAAGCGGTTATCGCACAGCTTCGGCCG 60
consensus_1645#1 CCGCGGACGCGTGGGATCGTGACCCTGCACGACATCGTGCACA-CGCGTGAAAC--GCTC 57
*** * * ** * * * * * * * * * *** **
consensus_1645#0 ATTATCGATATCGCGCGAGGAAAGCGACGACTCCACGCAGCAGAACAACCACCATCACCT 120
consensus_1645#1 ACGTTCGTCTTCGAGTTTGTGAA-TACGGACCTGTCACAGTACATGGAGCGACACC---- 112
* *** *** * * ** *** * *** * * * * ** *
consensus_1645#0 TCCGCACCATCACCATCATCACCACGGACATG-GTCACAATCGTGGCGGTAAAGTGCCCT 179
consensus_1645#1 --CGGGCGGACTCGACCACCGAAACGTGCGCCTGTTCCTGTTCCAGCTGCTGCGAGGGCT 170
** * * * * ** * *** * ** * * ** * * * **
consensus_1645#0 TCAACGGTTACACATCCGAGGAGTACCTCGACCGACTGGAACCAAACGGCAACATCCCGG 239
consensus_1645#1 TTCCTATTGCCATAAGCGACGGGTGCTGC-ACCGG--GACGTGAAGCCGCAGAA--CCTG 225
* * ** * *** * ** * * **** * ** * *** * ** *
consensus_1645#0 CCGATAAGTCCTACAGCAAACATTGGAACAGAGTAAGCGATCACGAGCGCGT-CCATCGG 298
consensus_1645#1 CTCATCAGCGAAACGGGCGA-GCTGAAGCTGGCCGATTTTGGGCTGGCCCGTGCCAAGAG 284
* ** ** ** * * ** * * * * * ** *** *** *
consensus_1645#0 CAGGCTGGTCGGTGTCGTCCGACAGCAAGCTGCTGGACGACGACATC---CGGGAGGAAA 355
consensus_1645#1 CGTCCCCAGTCATACCTACTCGCACGAGGTAGTCACACTGTGGTACCGACCGCCAGATGT 344
* * * * * ** * * * ** * * * ** **
consensus_1645#0 CACGTGTGATAATGCGACCTAAGAAGCCACCCCGGCCGAAATCCGAAGTGTT---CTTGA 412
consensus_1645#1 CCTGCTCGGCAGTACGG---AGTACTCCACCTCGCTCGACATCTGGGGCGTCGGGTGTAT 401
* * * * * ** * * ***** ** *** *** * * ** *
consensus_1645#0 ACAAGCACGACCCGCACCCGAGAAGGAAACGGTTTAGTGCATTCGGGGGTGACTCGCCAT 472
consensus_1645#1 CTTTGTGGAGATGATTACCGGCATGCCGACCTTCCCCGGCATACGCGAC--ACGTACGAT 459
* *** * * ** * **** ** * ** * **
consensus_1645#0 TTGGCAAATCAGATGCATACATCAAACTAGAGCAACTCGGTGAAGGATCCTACGCGACGG 532
consensus_1645#1 CAGCTGGACAAGATCTTCA---AAATTCTCGGCACACCGACGGAGGA---CACGTGGCCC 513
* * **** * ** *** ** * **** *** * *
consensus_1645#0 TATTTAAAGGTTATAGCAATTTAACAAAT-CAAGTGGTAGCGTTAAAGGAATTCAGGTTA 591
consensus_1645#1 GGGGTAACGCACCTACCGGGGTATAAGCTACAAATGCTAGGCTTT------TTCAAATCC 567
*** * ** * ** * * *** ** *** ** **** *
consensus_1645#0 CAGGGAGGAGGAGGGCGCACCGTTCACGGCCATACGCGAGGCATCGCTGCTGAAGGAACT 651
consensus_1645#1 C--GCAAGCTAGGGCTGAGCTTTCCCCGGTTGTACG----ACATCA------ACGAGGGC 615
* * * * ** * * * * *** **** **** * *
consensus_1645#0 GAAACATTTCGAACATCGTGACCCTGCACGACATCGTGCACACGCGTGAAACGCTCACGT 711
consensus_1645#1 GAAACGAT--GGCCACCGCGTTTCTGCAGCTCA--------------------------- 646
***** * * ** ** * ***** **
consensus_1645#0 T 712
consensus_1645#1 -
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||