cluster # 1647

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1647 cluster # 1647 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1647#0 length = 689 sequences # 1

consensus_1647#1 length = 279 sequences # 1

consensusID : consensus_1647#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [CCGGTTTGTATACAATGCACTTTGCCGAGTTTTGCACAAGCGCGAGATAAAAGTGAAAGTAAAAATTTGTGGAGCAAAACAGAGCGCGCCCGCTCTGTGCGCTAGATTCATTACCATGCTGTGCTGGCCAACTGCTACCGCCCCGGATGTTGGCCGTCCGGTTCGGTGCTGCTCAACAATGGTGACGGAAAAATAGTCAGATACAATCGGTGGTGGTGGCAGCTTTTGAAGCATCGTGGTACGCCCGTTCGAATGGAAGCGTGATTAAGAGATAAATCAACTCCTCAGAGGATATCACCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAGGGGGAAATGAAACACAAAAGTATTATCAGTGAAAAATGCCATTAAACTTGGTATTAGTTGAGATCATTGTGAAGAGCGACTACGATAAGCTACTAAAGTGACGTAACCCCGTTGGATGAAATCGTCCCGCGCCAATCGATGAGCTCGATTGTCCTGCATTCGAAGCAGCTGAATCATACAACGCTTACGCTATGAGACGAAATGTGAAAGTGTTCGGACTCGTTTCCATCACCTGGATTGGTGGTGGTGATCTACTATTTCCAGGGCGACTACTATCACAATGACGGGAATCGTGCGCTGCGTTTGCGCAGCAGTAAAATGAAGCACTCCGCCTCGGAACACTATAAT]

[+] EMBL BM607258             [CCGGTTTGTATACAATGCACTTTGCCGAGTTTTGCACAAGCGCGAGATAAAAGTGAAAGTAAAAATTTGTGGAGCAAAACAGAGCGCGCCCGCTCTGTGCGCTAGATTCATTACCATGCTGTGCTGGCCAACTGCTACCGCCCCGGATGTTGGCCGTCCGGTTCGGTGCTGCTCAACAATGGTGACGGAAAAATAGTCAGATACAATCGGTGGTGGTGGCAGCTTTTGAAGCATCGTGGTACGCCCGTTCGAATGGAAGCGTGATTAAGAGATAAATCAACTCCTCAGAGGATATCACCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAGGGGGAAATGAAACACAAAAGTATTATCAGTGAAAAATGCCATTAAACTTGGTATTAGTTGAGATCATTGTGAAGAGCGACTACGATAAGCTACTAAAGTGACGTAACCCCGTTGGATGAAATCGTCCCGCGCCAATCGATGAGCTCGATTGTCCTGCATTCGAAGCAGCTGAATCATACAACGCTTACGCTATGAGACGAAATGTGAAAGTGTTCGGACTCGTTTCCATCACCTGGATTGGTGGTGGTGATCTACTATTTCCAGGGCGACTACTATCACAATGACGGGAATCGTGCGCTGCGTTTGCGCAGCAGTAAAATGAAGCACTCCGCCTCGGAACACTATAAT]




>consensus_1647#0
CCGGTTTGTATACAATGCACTTTGCCGAGTTTTGCACAAGCGCGAGATAAAAGTGAAAGT
AAAAATTTGTGGAGCAAAACAGAGCGCGCCCGCTCTGTGCGCTAGATTCATTACCATGCT
GTGCTGGCCAACTGCTACCGCCCCGGATGTTGGCCGTCCGGTTCGGTGCTGCTCAACAAT
GGTGACGGAAAAATAGTCAGATACAATCGGTGGTGGTGGCAGCTTTTGAAGCATCGTGGT
ACGCCCGTTCGAATGGAAGCGTGATTAAGAGATAAATCAACTCCTCAGAGGATATCACCA
AATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAGGGGGAAATGAAACACAAAA
GTATTATCAGTGAAAAATGCCATTAAACTTGGTATTAGTTGAGATCATTGTGAAGAGCGA
CTACGATAAGCTACTAAAGTGACGTAACCCCGTTGGATGAAATCGTCCCGCGCCAATCGA
TGAGCTCGATTGTCCTGCATTCGAAGCAGCTGAATCATACAACGCTTACGCTATGAGACG
AAATGTGAAAGTGTTCGGACTCGTTTCCATCACCTGGATTGGTGGTGGTGATCTACTATT
TCCAGGGCGACTACTATCACAATGACGGGAATCGTGCGCTGCGTTTGCGCAGCAGTAAAA
TGAAGCACTCCGCCTCGGAACACTATAAT

consensusID : consensus_1647#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [CCGAACCCCTGTGTGAAACGCTGTACGTTTCTCGGTGAACGAAGTCCAATTTGCAGATGCAAAAATAATCAAATCGAATGTAATGACAAACGGTGGATCTCTTCGTGAGTGTGGCCAAACAGCACAACCGAACCAGTGTGGGTTGGATGTAGGGGGCCTGTCCGCAGAAAATCTGGCGAATTGATTAAGAGATAAATCAACTCCTCAGAGGATATCATCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAAGGGGAAATGAAACACCAA]

[+] EMBL BM645360             [CCGAACCCCTGTGTGAAACGCTGTACGTTTCTCGGTGAACGAAGTCCAATTTGCAGATGCAAAAATAATCAAATCGAATGTAATGACAAACGGTGGATCTCTTCGTGAGTGTGGCCAAACAGCACAACCGAACCAGTGTGGGTTGGATGTAGGGGGCCTGTCCGCAGAAAATCTGGCGAATTGATTAAGAGATAAATCAACTCCTCAGAGGATATCATCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAAGGGGAAATGAAACACCAA]




>consensus_1647#1
CCGAACCCCTGTGTGAAACGCTGTACGTTTCTCGGTGAACGAAGTCCAATTTGCAGATGC
AAAAATAATCAAATCGAATGTAATGACAAACGGTGGATCTCTTCGTGAGTGTGGCCAAAC
AGCACAACCGAACCAGTGTGGGTTGGATGTAGGGGGCCTGTCCGCAGAAAATCTGGCGAA
TTGATTAAGAGATAAATCAACTCCTCAGAGGATATCATCAAATGTTGCTCTTTTCTCCAA
ACTTTGGCTAAGCCATCCAAAGGGGAAATGAAACACCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1647#0      CCGGTTTGTATACAATGCACTTTGCCGAGTTTTGCACAAGCGCGAGATAAAAGTGAAAGT 60
consensus_1647#1      ----------------------------------------------------------CC 2
                                                                                  

consensus_1647#0      AAAAATTTGTGGAGCAAAACAGAGCGCGCCCGCTCTGTGCGCTAGATTCATTACCATGCT 120
consensus_1647#1      GAACCCCTGTG---TGAAACGCTGTACGTTT-CTCGGTGAACGAAGTCCAATTTGCAGAT 58
                       **    ****     ****   *  **    *** ***  * *  * ** *     * *

consensus_1647#0      GTGCTGGCCAACTGCTACCGCCCCGGATGTTGGCCGTCCGGTTCGGTGCTGCTCAACAAT 180
consensus_1647#1      G-------CAAAAATAATCAAATCGAATGTAA--TGACAAA--CGGTGGATCTCTTCGTG 107
                      *       ***     * *    ** ****     * *     *****   ***  *   

consensus_1647#0      GGTGACGGAAAAATAGTCAGATACAATCGGTGGTGGTGGCAGCTTTTGAAGCATCGTGGT 240
consensus_1647#1      AGTG-TGGCCAAACAGCACAACCGAACCAGTGTGGGTTGGA-----TGTAG----GGGGC 157
                       ***  **  *** **    *   ** * ***  *** * *     ** **    * ** 

consensus_1647#0      ACGCCCGTTCGAA---TGGAAGCGTGATTAAGAGATAAATCAACTCCTCAGAGGATATCA 297
consensus_1647#1      CTGTCCGCAGAAAATCTGGCGAATTGATTAAGAGATAAATCAACTCCTCAGAGGATATCA 217
                        * ***    **   ***     ************************************

consensus_1647#0      CCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAGGGGGAAATGAAACACA 357
consensus_1647#1      TCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAAGGGGAAATGAAACACC 277
                       ****************************************** *************** 

consensus_1647#0      AAAGTATTATCAGTGAAAAATGCCATTAAACTTGGTATTAGTTGAGATCATTGTGAAGAG 417
consensus_1647#1      AA---------------------------------------------------------- 279
                      **                                                          

consensus_1647#0      CGACTACGATAAGCTACTAAAGTGACGTAACCCCGTTGGATGAAATCGTCCCGCGCCAAT 477
consensus_1647#1      ------------------------------------------------------------
                                                                                  

consensus_1647#0      CGATGAGCTCGATTGTCCTGCATTCGAAGCAGCTGAATCATACAACGCTTACGCTATGAG 537
consensus_1647#1      ------------------------------------------------------------
                                                                                  

consensus_1647#0      ACGAAATGTGAAAGTGTTCGGACTCGTTTCCATCACCTGGATTGGTGGTGGTGATCTACT 597
consensus_1647#1      ------------------------------------------------------------
                                                                                  

consensus_1647#0      ATTTCCAGGGCGACTACTATCACAATGACGGGAATCGTGCGCTGCGTTTGCGCAGCAGTA 657
consensus_1647#1      ------------------------------------------------------------
                                                                                  

consensus_1647#0      AAATGAAGCACTCCGCCTCGGAACACTATAAT 689
consensus_1647#1      --------------------------------