These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CCGCCCACGCGTCCGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGTTGCGTTTATCAACCTTGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTTGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCAAACGTACAACTGCTGTCCTACGACTGCTTTATTCGTACTACTAATTTACCTTTTTATGTTACTTTTGTACCAACTGTCACGAGATTCCAACGTTGTAACTTAATATTCCACACCGGTTAAATGGCGAGACGGTGGAAACGGCTCCCCATGCATGCAATAGGCTCTGTTGTCCTTTCTTTTTTCCACTAGGATATAAAGTGCATTTTGGTTGCAACGTGGGAACAGCTAACACTAGTTTAGAGGAGAGGAAAATAGGAATTTTTGCATCCATTCTTGCCTCTTTTTTTTTTACTCATCATAATCGCACATTTTCACGTTCATTGATTTTTT] [+] EMBL BM638283 [CCGCCCACGCGTCCGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGTTGCGTTTATCAACCTTGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTTGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCAAACGTACAACTGCTGTCCTACGACTGCTTTATTCGTACTACTAATTTACCTTTTTATGTTACTTTTGTACCAACTGTCACGAGATTCCAACGTTGTAACTTAATATTCCACACCGGTTAAATGGCGAGACGGTGGAAACGGCTCCCCATGCATGCAATAGGCTCTGTTGTCCTTTCTTTTTTCCACTAGGATATAAAGTGCATTTTGGTTGCAACGTGGGAACAGCTAACACTAGTTTAGAGGAGAGGAAAATAGGAATTTTTGCATCCATTCTTGCCTCTTTTTTTTTTACTCATCATAATCGCACATTTTCACGTTCATTGATTTTTT] consensusID : consensus_1648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [ATCCCCCGAGGTTAAGTTGATGGTAGGAGAGAAGTTTAGTTTAGATTAACGTGTATCCACACTCTTCTCCATAACATAAATAGCACGACGACCCTCGATAAAGTCCGCAAAATACACACCGCCATCCAGGGCGGGATAATTGCATGGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGATTGCGCTTTATCAACCTTGGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTATGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCA] [+] EMBL AL932729 [ATCCCCCGAGGTTAAGTTGATGGTAGGAGAGAAGTTTAGTTTAGATTAACGTGTATCCACACTCTTCTCCATAACATAAATAGCACGACGACCCTCGATAAAGTCCGCAAAATACACACCGCCATCCAGGGCGGGATAATTGCATGGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGATTGCGCTTTATCAACCTTGGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTATGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1648#0 ------------------------------------------------------------ consensus_1648#1 ATCCCCCGAGGTTAAGTTGATGGTAGGAGAGAAGTTTAGTTTAGATTAACGTGTATCCAC 60 consensus_1648#0 ------------------------------------------------------------ consensus_1648#1 ACTCTTCTCCATAACATAAATAGCACGACGACCCTCGATAAAGTCCGCAAAATACACACC 120 consensus_1648#0 -----------CCGCCCACGCGTCCGGG-TAGGTTTGACACACTCACACACACCTCGACG 48 consensus_1648#1 GCCATCCAGGGCGGGATAATTGCATGGGGTAGGTTTGACACACTCACACACACCTCGACG 180 * * * * *** ******************************* consensus_1648#0 CAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTG 108 consensus_1648#1 CAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTG 240 ************************************************************ consensus_1648#0 CG-TTGCG-TTTATCAACCTTGG-TGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGC 165 consensus_1648#1 CGATTGCGCTTTATCAACCTTGGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGC 300 ** ***** ************** ************************************ consensus_1648#0 TAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTT-TGCCGAACGGTTTATGGA 224 consensus_1648#1 TAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTATGCCGAACGGTTTATGGA 360 ***************************************** ****************** consensus_1648#0 AAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTT 284 consensus_1648#1 AAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTT 420 ************************************************************ consensus_1648#0 TTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCAAACGTACAACTGCTGTC 344 consensus_1648#1 TTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCA----------------- 463 ******************************************* consensus_1648#0 CTACGACTGCTTTATTCGTACTACTAATTTACCTTTTTATGTTACTTTTGTACCAACTGT 404 consensus_1648#1 ------------------------------------------------------------ consensus_1648#0 CACGAGATTCCAACGTTGTAACTTAATATTCCACACCGGTTAAATGGCGAGACGGTGGAA 464 consensus_1648#1 ------------------------------------------------------------ consensus_1648#0 ACGGCTCCCCATGCATGCAATAGGCTCTGTTGTCCTTTCTTTTTTCCACTAGGATATAAA 524 consensus_1648#1 ------------------------------------------------------------ consensus_1648#0 GTGCATTTTGGTTGCAACGTGGGAACAGCTAACACTAGTTTAGAGGAGAGGAAAATAGGA 584 consensus_1648#1 ------------------------------------------------------------ consensus_1648#0 ATTTTTGCATCCATTCTTGCCTCTTTTTTTTTTACTCATCATAATCGCACATTTTCACGT 644 consensus_1648#1 ------------------------------------------------------------ consensus_1648#0 TCATTGATTTTTT 657 consensus_1648#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||