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Anopheles gambiae
cluster # 1648 cluster # 1648       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1648#0 length = 657 sequences # 1  
consensus_1648#1 length = 463 sequences # 1  

consensusID : consensus_1648#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence
                              [CCGCCCACGCGTCCGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGTTGCGTTTATCAACCTTGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTTGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCAAACGTACAACTGCTGTCCTACGACTGCTTTATTCGTACTACTAATTTACCTTTTTATGTTACTTTTGTACCAACTGTCACGAGATTCCAACGTTGTAACTTAATATTCCACACCGGTTAAATGGCGAGACGGTGGAAACGGCTCCCCATGCATGCAATAGGCTCTGTTGTCCTTTCTTTTTTCCACTAGGATATAAAGTGCATTTTGGTTGCAACGTGGGAACAGCTAACACTAGTTTAGAGGAGAGGAAAATAGGAATTTTTGCATCCATTCTTGCCTCTTTTTTTTTTACTCATCATAATCGCACATTTTCACGTTCATTGATTTTTT]

[+] EMBL BM638283             [CCGCCCACGCGTCCGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGTTGCGTTTATCAACCTTGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTTGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCAAACGTACAACTGCTGTCCTACGACTGCTTTATTCGTACTACTAATTTACCTTTTTATGTTACTTTTGTACCAACTGTCACGAGATTCCAACGTTGTAACTTAATATTCCACACCGGTTAAATGGCGAGACGGTGGAAACGGCTCCCCATGCATGCAATAGGCTCTGTTGTCCTTTCTTTTTTCCACTAGGATATAAAGTGCATTTTGGTTGCAACGTGGGAACAGCTAACACTAGTTTAGAGGAGAGGAAAATAGGAATTTTTGCATCCATTCTTGCCTCTTTTTTTTTTACTCATCATAATCGCACATTTTCACGTTCATTGATTTTTT]


>consensus_1648#0 CCGCCCACGCGTCCGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCC ATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGTTGCGTTTAT CAACCTTGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTT CCCCACTCGTTTCTTGGTGAACTGTTTGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAA TTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACA CCTCGGTGGAACTTCACAATCAACTCAAACGTACAACTGCTGTCCTACGACTGCTTTATT CGTACTACTAATTTACCTTTTTATGTTACTTTTGTACCAACTGTCACGAGATTCCAACGT TGTAACTTAATATTCCACACCGGTTAAATGGCGAGACGGTGGAAACGGCTCCCCATGCAT GCAATAGGCTCTGTTGTCCTTTCTTTTTTCCACTAGGATATAAAGTGCATTTTGGTTGCA ACGTGGGAACAGCTAACACTAGTTTAGAGGAGAGGAAAATAGGAATTTTTGCATCCATTC TTGCCTCTTTTTTTTTTACTCATCATAATCGCACATTTTCACGTTCATTGATTTTTT



consensusID : consensus_1648#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence
                              [ATCCCCCGAGGTTAAGTTGATGGTAGGAGAGAAGTTTAGTTTAGATTAACGTGTATCCACACTCTTCTCCATAACATAAATAGCACGACGACCCTCGATAAAGTCCGCAAAATACACACCGCCATCCAGGGCGGGATAATTGCATGGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGATTGCGCTTTATCAACCTTGGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTATGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCA]

[+] EMBL AL932729             [ATCCCCCGAGGTTAAGTTGATGGTAGGAGAGAAGTTTAGTTTAGATTAACGTGTATCCACACTCTTCTCCATAACATAAATAGCACGACGACCCTCGATAAAGTCCGCAAAATACACACCGCCATCCAGGGCGGGATAATTGCATGGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGATTGCGCTTTATCAACCTTGGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTATGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCA]


>consensus_1648#1 ATCCCCCGAGGTTAAGTTGATGGTAGGAGAGAAGTTTAGTTTAGATTAACGTGTATCCAC ACTCTTCTCCATAACATAAATAGCACGACGACCCTCGATAAAGTCCGCAAAATACACACC GCCATCCAGGGCGGGATAATTGCATGGGGTAGGTTTGACACACTCACACACACCTCGACG CAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTG CGATTGCGCTTTATCAACCTTGGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGC TAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTATGCCGAACGGTTTATGGA AAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTT TTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1648#0      ------------------------------------------------------------
consensus_1648#1      ATCCCCCGAGGTTAAGTTGATGGTAGGAGAGAAGTTTAGTTTAGATTAACGTGTATCCAC 60
                                                                                  

consensus_1648#0      ------------------------------------------------------------
consensus_1648#1      ACTCTTCTCCATAACATAAATAGCACGACGACCCTCGATAAAGTCCGCAAAATACACACC 120
                                                                                  

consensus_1648#0      -----------CCGCCCACGCGTCCGGG-TAGGTTTGACACACTCACACACACCTCGACG 48
consensus_1648#1      GCCATCCAGGGCGGGATAATTGCATGGGGTAGGTTTGACACACTCACACACACCTCGACG 180
                                 * *   *   *   *** *******************************

consensus_1648#0      CAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTG 108
consensus_1648#1      CAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTG 240
                      ************************************************************

consensus_1648#0      CG-TTGCG-TTTATCAACCTTGG-TGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGC 165
consensus_1648#1      CGATTGCGCTTTATCAACCTTGGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGC 300
                      ** ***** ************** ************************************

consensus_1648#0      TAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTT-TGCCGAACGGTTTATGGA 224
consensus_1648#1      TAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTATGCCGAACGGTTTATGGA 360
                      ***************************************** ******************

consensus_1648#0      AAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTT 284
consensus_1648#1      AAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTT 420
                      ************************************************************

consensus_1648#0      TTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCAAACGTACAACTGCTGTC 344
consensus_1648#1      TTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCA----------------- 463
                      *******************************************                 

consensus_1648#0      CTACGACTGCTTTATTCGTACTACTAATTTACCTTTTTATGTTACTTTTGTACCAACTGT 404
consensus_1648#1      ------------------------------------------------------------
                                                                                  

consensus_1648#0      CACGAGATTCCAACGTTGTAACTTAATATTCCACACCGGTTAAATGGCGAGACGGTGGAA 464
consensus_1648#1      ------------------------------------------------------------
                                                                                  

consensus_1648#0      ACGGCTCCCCATGCATGCAATAGGCTCTGTTGTCCTTTCTTTTTTCCACTAGGATATAAA 524
consensus_1648#1      ------------------------------------------------------------
                                                                                  

consensus_1648#0      GTGCATTTTGGTTGCAACGTGGGAACAGCTAACACTAGTTTAGAGGAGAGGAAAATAGGA 584
consensus_1648#1      ------------------------------------------------------------
                                                                                  

consensus_1648#0      ATTTTTGCATCCATTCTTGCCTCTTTTTTTTTTACTCATCATAATCGCACATTTTCACGT 644
consensus_1648#1      ------------------------------------------------------------
                                                                                  

consensus_1648#0      TCATTGATTTTTT 657
consensus_1648#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)