These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 937 fasta sequence [TTTGGGAGGGACGGTGGCCGTAGCCGTGGTTTTGATTACGTGGCTTTGTGGTGAGATCGCTCTGTTGTGAGATGAACGCGCGTTGTGAGTGTGTGGAGTCATCTTCAAAATGACAGCCGAACTGAATCGGTGTTAGCTCATGAAGTGGCTCTGCTTCTAGCCACTGGATTGCGTTGAGAACTTCCTGTGTGTTGTGAGTGTGTGTTTGTGTGTATTAATTGAAGCAGCTATATCCGGTTGACAAAGCGATTGGATCAAATTATGTGATAAAGTGTCAAATAGGTGAACTGTACGAAACGATTCGAGCTCAAAAATGAAGAAAGCAAACGGTCCGATAACCCAGCTGGTTATTATGATGCTCGAGGAGGACTTCACCTTCTGCGAGTGTAATTTTGCGGTGAAGCCAACGAGACGTCAGGATGTGAACCTGCCGAGAGTAACCGCACAACTGGAGAAGTTGATGGGAACAAATGTGGTCCGGCTGACGGATCGCAAATACATGCAGGAGCTGCAGCGCCGCATCCAGGAGGACTACAATGTCACGCTGGAGAAGCGCATCAGCGAACGGGAGGCGAAAGAAATCGAACGTGAGCGTAACCTGATCCTGTCCGGTGCGGGCGACACATACCGGAGGAGATGACCAGCTCGGTCTTTCTGGTGAACCAGAAAACGAACGTCAACATCCTGAACAAGCGGGAAAAGCTGAAAACGATCCGAGAGAAAAATGCGGAACGTTTGATCAAACAGGGCCACCGCTGGGAGCGGGAACGGCAGCAGATGGAGGAGCAGAGCCGCGAGCGCGAGATCGAACGGCGCACCAAGCGCGAGGCACTGCTCGAGCAGGAAAAGCTGTACATGATCGACGGCGGCATCGACGGGGGCGCTCGCAAGCAGCGACCGATGCAGCGACAGAACGAGGTGCACGAGTACCAGGAGT] [+] EMBL CNS09L0J [TTTGGGAGGGACGGTGGCCGTAGCCGTGGTTTTGATTACGTGGCTTTGTGGTGAGATCGCTCTGTTGTGAGATGAACGCGCGTTGTGAGTGTGTGGAGTCATCTTCAAAATGACAGCCGAACTGAATCGGTGTTAGCTCATGAAGTGGCTCTGCTTCTAGCCACTGGATTGCGTTGAGAACTTCCTGTGTGTTGTGAGTGTGTGTTTGTGTGTATTAATTGAAGCAGCTATATCCGGTTGACAAAGCGATTGGATCAAATTATGTGATAAAGTGTCAAATAGGTGAACTGTACGAAACGATTCGAGCTCAAAAATGAAGAAAGCAAACGGTCCGATAACCCAGCTGGTTATTATGATGCTCGAGGAGGACTTCACCTTCTGCGAGTGTAATTTTGCGGTGAAGCCAACGAGACGTCAGGATGTGAACCTGCCGAGAGTAACCGCACAACTGGAGAAGTTGATGGGAACAAATGTGGTCCGGCTGACGGATCGCAAATACATGCAGGAGCTGCAGCGCCGCATCCAGGAGGACTACAATGTCACGCTGGAGAAGCGCATCAGCGAACGGGAGGCGAAAGAAATCGAACGTGAGCGTAACCTGATCCTGTCCGGTGCGGGCGACACATACCGGAGGAGATGACCAGCTCGGTCTTTCTGGTGAACCAGAAAACGAACGTCAACATCCTGAACAAGCGGGAAAAGCTGAAAACGATCCGAGAGAAAAATGCGGAACGTTTGATCAAACAGGGCCACCGCTGGGAGCGGGAACGGCAGCAGATGGAGGAGCAGAGCCGCGAGCGCGAGATCGAACGGCGCACCAAGCGCGAGGCACTGCTCGAGCAGGAAAAGCTGTACATGATCGACGGCGGCATCGACGGGGGCGCTCGCAAGCAGCGACCGATGCAGCGACAGAACGAGGTGCACGAGTACCAGGAGT] consensusID : consensus_1652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [CCGCGGACGCGTGGGTGGGTGTCATAAATGTCAAATTTTTGTTGTACCCAGGCTGGGAAGCAAGCGGTAGCCGCGGTATTTAGCGCGTAAAAGTAATTTGTGCAGTTGGTTCGTCGTCTGTTGCTGCTGGGCTGGAAATTACAGTGTGTTTACGGACCCGAGAAACATTGCACTACACTGCTTCGGTGTGCCCTTTGCCTTACAGTGTGTTTTAATAGAACAACAGCGAAACTGACAGTGAGCGTGATGGACGCTTCGAACATCGTTGGCGATGACATTGACACCAAGGATTGCTGGTGGGAACGGCCAAGTGTTATCTATGCTGTGAACCTGCCGAGAGTAACCGCACAACTGGAGAAGTTGATGGGAACAAATGTGGTCCGGCTGACGGATCGCAAATACATGCAGGAGCTGCAGCGCCGCATCCAGGAGGACTACAATGTCACGCTGGAGAAGCGCATCAGCGAACGGGAGCACCGAGAATGGCAACGGCAGAAGCAACTGATCCTGGACGGCAAGTATAGCCTGGAAAACTGTCCCCGGTCTTTAATTCCACTGCACAGTATCGTGCTGGCGAAAGAAATCGAACGTGAGCGTAACCTGATCCTGTCCGGTGCGGGCGACAGCATACCGGAGGAGATGACCAGCTCGGTCTTTCTGGTGAACCAGAAAACGAACGT] [+] EMBL BM607228 [CCGCGGACGCGTGGGTGGGTGTCATAAATGTCAAATTTTTGTTGTACCCAGGCTGGGAAGCAAGCGGTAGCCGCGGTATTTAGCGCGTAAAAGTAATTTGTGCAGTTGGTTCGTCGTCTGTTGCTGCTGGGCTGGAAATTACAGTGTGTTTACGGACCCGAGAAACATTGCACTACACTGCTTCGGTGTGCCCTTTGCCTTACAGTGTGTTTTAATAGAACAACAGCGAAACTGACAGTGAGCGTGATGGACGCTTCGAACATCGTTGGCGATGACATTGACACCAAGGATTGCTGGTGGGAACGGCCAAGTGTTATCTATGCTGTGAACCTGCCGAGAGTAACCGCACAACTGGAGAAGTTGATGGGAACAAATGTGGTCCGGCTGACGGATCGCAAATACATGCAGGAGCTGCAGCGCCGCATCCAGGAGGACTACAATGTCACGCTGGAGAAGCGCATCAGCGAACGGGAGCACCGAGAATGGCAACGGCAGAAGCAACTGATCCTGGACGGCAAGTATAGCCTGGAAAACTGTCCCCGGTCTTTAATTCCACTGCACAGTATCGTGCTGGCGAAAGAAATCGAACGTGAGCGTAACCTGATCCTGTCCGGTGCGGGCGACAGCATACCGGAGGAGATGACCAGCTCGGTCTTTCTGGTGAACCAGAAAACGAACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1652#0 TTTGGGAGGGACGGTGGCCGTAGCCGTGGTTTTGATTACGTGGCTTTGTGGTGAGATCGC 60 consensus_1652#1 ------------------------------------------------------------ consensus_1652#0 TCTGTTGTGAGATGAACGCGCGTTGTGAGTGTGTGGAGTCATCTTCAAAATGACAGCCGA 120 consensus_1652#1 ----------------------CCGCGGACGCGTGGGTGGGTGTCATAAATG----TCAA 34 * * * **** * * ***** * * consensus_1652#0 ACTGAATCGGTGTTAGCTCATGAAGTGGCTCTGCTTCTAGCCACTGGATTGCGT-TGAGA 179 consensus_1652#1 ATTT--TTGTTGT--ACCCAGGCTGGGAAGCAAGCGGTAGCCGCGGTATTTAGCGCGTAA 90 * * * * *** * ** * * * * ***** * * *** * * * consensus_1652#0 ACTTCCTGTGTGTTGTGAGTGTGT-GTTTGTGTGTATTAATTGAAGCAGCTATATCCGGT 238 consensus_1652#1 AAGTAATTTGTGCAGTTGGTTCGTCGTCTGTTGCTGCTGGGCTGGA-AATTACAGTGTGT 149 * * * **** ** ** ** ** *** * * * ** * ** consensus_1652#0 TGACAAAGCGATTGGATCAAATTATGTGATAAAGTGTCAAATAGGTGAACTGTACGAAAC 298 consensus_1652#1 TTACGGACC---CGAGAAACATTGCACTACACTGCTTCG---GTGTGCCCTTTGCCTTAC 203 * ** * * * * *** * * * ** *** ** * * ** consensus_1652#0 GATTCGAGCTCAAAAATGAAGAAAGCAAACGGTCCGATAACCCAGCTGGTTATTATGATG 358 consensus_1652#1 AGT--GTGTTTTAATAGAACAACAGCGAAACTGACAGTGAGCGTGATGGACGCTTCGAAC 261 * * * * ** * * * *** ** * * * * * *** * ** consensus_1652#0 CTCGAGGAGGACTTCACCTTCTGCGAGTGTAATTTTGCGGTGAAGCCAACGAGACGTCAG 418 consensus_1652#1 ATCGTTGGCGATGACATTGACACCAAGGATTGCTGGTGGGAACGGCCAAGTGTTATCTAT 321 *** * ** ** * * ** * * ** ***** * consensus_1652#0 GATGTGAACCTGCCGAGAGTAACCGCACAACTGGAGAAGTTGATGGGAACAAATGTGGTC 478 consensus_1652#1 GCTGTGAACCTGCCGAGAGTAACCGCACAACTGGAGAAGTTGATGGGAACAAATGTGGTC 381 * ********************************************************** consensus_1652#0 CGGCTGACGGATCGCAAATACATGCAGGAGCTGCAGCGCCGCATCCAGGAGGACTACAAT 538 consensus_1652#1 CGGCTGACGGATCGCAAATACATGCAGGAGCTGCAGCGCCGCATCCAGGAGGACTACAAT 441 ************************************************************ consensus_1652#0 GTCACGCTGGAGAAGCGCATCAGCGAACGGGAGGCGAAAGAAATCGAACGTGAGCGTAAC 598 consensus_1652#1 GTCACGCTGGAGAAGCGCATCAGCGAACGGGAGCACCGAGAATGGCAACGGCAGAAGCAA 501 ********************************* **** **** ** * consensus_1652#0 CTGATCCTGTCCGGTGCGGGCGACACATACCGGAGGAGATGACCAGCTCGGTCTTTCTGG 658 consensus_1652#1 CTGATCCTGGACGGC-------AAGTATAGCCTGGAAAACTGTC--CCCGGTCTTT---- 548 ********* *** * *** * * * * * * ******** consensus_1652#0 TGAACCAGAAAACGAACGTCAACATCCTGAACAAGCGGGAAAAGCTGAAAACGATCCGAG 718 consensus_1652#1 --AATTCCACTGCA-----CAGTATCGTG--CTGGCGAAAGAAATCGAA-------CGTG 592 ** * * ** *** ** * *** * ** *** ** * consensus_1652#0 AGAAAAATGCGGAACGTTTGATCAAACAGGGCCACCGC-TGGGAGCGGGAACGGCAGCAG 777 consensus_1652#1 AGCGTAACCTGAT---CCTGTCCGGTGCGGGCGACAGCATACCGGAGGAGATGAC--CAG 647 ** ** * ** * **** ** ** * * ** * * * *** consensus_1652#0 ATGGAGGAGCAGAGCCGCGAGCGCGAGATCGAACGGCGCACCAAGCGCGAGGCACTGCTC 837 consensus_1652#1 CTCGG---TCTTTCTGGTGAACCAGAAAACGAACGT------------------------ 680 * * * * ** * ** * ****** consensus_1652#0 GAGCAGGAAAAGCTGTACATGATCGACGGCGGCATCGACGGGGGCGCTCGCAAGCAGCGA 897 consensus_1652#1 ------------------------------------------------------------ consensus_1652#0 CCGATGCAGCGACAGAACGAGGTGCACGAGTACCAGGAGT 937 consensus_1652#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||